>input_sequence_63663
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------------------ATGGCGGCTTCAGCTTGGTCGAAGCTCGCCCTTCTTCTCTGCTACTTTGGCTTGAAGGCCTT
CGTTTTCGGCATCGTTGCCGAAAACAAAAAGGTCAATTGCTTGTCCTGTCCATCTGGTTCATTCGTTCGCTTGTATTGAT
TATTAGGTTATTATTGCAAAAGTACTAAACCTACGGGATGCCTCCATCGATTGCAGCCTCAGTTTGGAACTGGTACCGTC
ATCGGAGATGGTTATGTTATGTGCGAGTTCTCACGTCTCAGCGTGGTCATGGGGATCCTCTCGATGATCTCGCTGCTAAT
CACCATCCTCATCGGCCACCGCGCCGTCTTCTACCCCTACCCTACCAACAAGACCAACCAGCAACCCGCAACGGTTCCTC
GCGGAGCTCTGCTTCGAAGCACCATCCTCATAGTCTTCTTCATCGTCGCCGAGTAACTAAATGAACCCCTTTATTTAGCT
GGCTATCTAAGTACTCCCTCGGTAAACTAATATAGGGTCGGTGAGATCACTAAATCGTTTAGATCACTACTTTATTGATC
TGAACAATCTTATATTAACGATCCTATATTAGTTTCCAGAGGGAGTAATTAATTAAGGTCGTTCATCAA-TGATCTGTTT
TGTCAAG-TAACTAATTA-CATTTCTCGATGGGATTAATCATGAAAATAGGTTGGTCTCGATTTCGGCTTTGGTGATGCT
GGTGGGAGCGACCAAGACGCAGGCGGCCAACCTCCGGTACCAGCTGCCAATGCAACCTGACGGCACCATGAGCTGCCCGT
CAAACACGGACAAGATGGATGGCCACTTCGGTGGAGGCGCCCTGCTGGCCCTTGATGCTGGGCTCATCTGGTTTGTCTGC
CAGCTGCTCGCGCTCGAGGCCCGGGCTAACTACCTCGACCGTCTCCCTGGGGATGATGAGGACCACAATGACAACAACAA
GAAAAATGATGGCGACATTGTAGCCTCCGAGGACCACAGTCAGCTAGCATAA----------------------------
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>chr3D_1_TraesCS3D01G544900
GCCTCCGGGAAGCTCGCCAGGTTCTCCCTGACAATCGCCCGCAGCTCCACGTAGGAGTATTCGGAGAAGAGGTCGTCCTC
CATCGGATCGTCCGTCGTCGACGGCAAGCCCTCGCTGCGCTACGGTGGATCCGGATCAATCGGAAGGCA-----------
---AATAGAGCGATTGTGAT-----------GGCGTCGTCTTCGAACCCTCGATCGATACAAGAAGGCAGACGGCAATGG
GTTTTGCATTGCAATGGGCCCGGTCAGCTGTAAATTGCAATGGGCCTTTTCTTTATCACCTGACCAAACATCTCGGCCTG
TTTTGCTTGAGTATATTGCCCAACCAA-----------------------------------------------------
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----------------CAATGCTACCCTTATTTTGCTCAAAAAAAAAAACAATGCCACCCTTATGTTCTCAAAAAAAAAA
ACTTATGATCTAAAACCATGAAAAAAACTTTTGTTCTCCAAAAAAAATTACTGCACAAACATATGGGACTGTGCTTCCGA
AAGCCATCATGTAATCACGTGGTTAGCAGAGATTT-TT--TTTTGCGGGAAAGCGGAGATTGCAATGCTGTTACTCCAAC
CAATTCTCGCATATTTATATTTTAACGAATGAATTTATATTCTACACAATATTTTACAGAATAGATCTCCAATACCGCGA
CAAGCCAAACATATCGGTTGAATGGTGCTGCACGATCAATGTGTCTGGTTCCACACGAAACATTGAGTTTTGCATGGCTG
AGGAACACCATCATCATATAAATTTTATTTTTCCTTGTGTTAGTGAGAAATAAGAAAAACAAAAAGACCAAAACCCACAT
AGTAAGCATATATACCGTTCCTTGAGATTTTGGCAGCAGCGATAACTAATTCGTACATGCATAGATTTCCCCGTAACAAA
GAATAAGAAATGCCGGCAAGCAGCATAGTAATCCTAACGAGGCCCCGAATGGATCCAAAAGAGTTTATTAAGCTACTAAG
GTA---TTACTTAGCACCCAGCAGGAAAACAAATTAAGCAACGATCCT--------------------------------
------CAAGCATCAACAATGGCGGCTTCAGCTTGGTCGAAGCTCGCCCTTCTTCTCTGCTACTTTGGCTTGAAGGCCTT
CGTTTTCGGCATCGTTGCCGAAAACAAAAAGGTCAATTGCTTGTCCTGTCCATCTGGTTCATTCGTTCGCTTGTATTGAT
TATTAGGTTATTATTGCAAAAGTACTAAACCTACGGGATGCCTCCATCGATTGCAGCCTCAGTTTGGAACTGGTACCGTC
ATCGGAGATGGTTATGTTATGTGCGAGTTCTCACGTCTCAGCGTGGTCATGGGGATCCTCTCGATGATCTCGCTGCTAAT
CACCATCCTCATCGGCCACCGCGCCGTCTTCTACCCCTACCCTACCAACAAGACCAACCAGCAACCCGCAACGGTTCCTC
GCGGAGCTCTGCTTCGAAGCACCATCCTCATAGTCTTCTTCATCGTCGCCGAGTAACTAAATGAACCCCTTTATTTAGCT
GGCTATCTAAGTACTCCCTCGGTAAACTAATATAGGGTCGGTGAGATCACTAAATCGTTTAGATCACTACTTTATTGATC
TGAACAATCTTATATTAACGATCCTATATTAGTTTCCAGAGGGAGTAATTAATTAAGGTCGTTCATCAA-TGATCTGTTT
TGTCAAG-TAACTAATTA-CATTTCTCGATGGGATTAATCATGAAAATAGGTTGGTCTCGATTTCGGCTTTGGTGATGCT
GGTGGGAGCGACCAAGACGCAGGCGGCCAACCTCCGGTACCAGCTGCCAATGCAACCTGACGGCACCATGAGCTGCCCGT
CAAACACGGACAAGATGGATGGCCACTTCGGTGGAGGCGCCCTGCTGGCCCTTGATGCTGGGCTCATCTGGTTTGTCTGC
CAGCTGCTCGCGCTCGAGGCCCGGGCTAACTACCTCGACCGTCTCCCTGGGGATGATGAGGACCACAATGACAACAACAA
GAAAAATGATGGCGACATTGTAGCCTCCGAGGACCACAGTCAGCTAGCATAATGGCGACTGCCAGACAGTGCCACCTTGT
CCACCATGAGTCAAAACCATGCCATGTTGTAATGAAGCCATTTAAACAGGGTGGAAAGACATAAAACCTATACCAGCATC
TCAATGACAAAACTATACTCATCTTTGTTAGAAAGCGCTTTGCTAGTTATGTACTGAATAATTTGTGAACAGCCCATGGA
ATAACCGTTTGCTAAATGGGCGACTAGTTGGGTGGTTGCACTCACCCACGCCTATGTTTCTGATGTTATTAGTGCCAGAG
GACGTTAATGTAGAATTTCGACAAAGGGTGG-ATTTTATTAGGTTAAAATGGAGCATCAAGTGTATACAAACACTATGAG
CACACACC-GTCCTATGCACAGCGAAGATGCAGATAGACAACACCAACACACATACAC--AAAAT--ACGCCGACAACTA
ACAAAG-CGTAAAAGACCAAAGGTATGTGTAGGCGAGGAAAAATGAAACAGAAAACCCGGATCGTTTAGATCCGCGATTT
GCAAATTGTACC-AATGACCATATCCACAACAACCAACGTATGACACCACATGGTCGACAATGTTCTTCAATAGCAATGC
CTTCAGAAAGGGAGCGACGTTCATGCACCGCCGTCATCAGATCCAGCCAT--AAGGCTTGAATCTTGATTTTCACCCTCA
AAGATAAGTCTAAGCATATCCGAGCAATGCCTTCAACAAGCTAACGACGCAA---A--GACATCGCCATTGCCAGCTGGT
ATACCCAACTCGGGTAAGAGCTAGGCTTTCACCC-AGAG-CTCAGGACCGGATG--CACGTAGCACGACCGTCGAAGTCA
CTCAAGTGTTGTCGCTACCACTGCTCTGCGATCCCGGTAGCTAC-----AA------GCGATGTGCGACCGCCGCCACTG
CACAACCATCCATTTGCGTCAAGTCTTTGTCCATAGTTTGCATAACACCGCCGAACACAACCGCCGGATCTTGAGAGGCT
AACCTTCTCCGAAGACCATTCGGCAACCAGCGTCATCGTGGA
>chr3A_1
GCCTCCGGGAAGCTCGCCAGGTTCTCCCTGACAATCACCAGCAGTTCAGTGTAGGAGTATTCGGAGAAGAGGTCGTCCTC
CATCGGCTCGTCCGTCGTCGACAGCAAGCCCTCGCTGCGGTGGAT------CAGATCAATCGGAAGGCAGACGTACGTAG
AAGAATAGAGCGATTGTGATGAGGCGGCTGTGGCGTCGTCTTCGAACCCTCGATCGATACAAGAAGGCAGACGGCAATGG
GCTTTGCAGACCA---GGCCTGGACAGCTGTACATTGCAATGGGCTTTTTCTTCATTCTCC-------------------
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----------------------------------------AAAAAAGTTACTGCACAAACATATGGGACTGTGCTTACGA
AAGCCATCATGTAATCACGTGGCTACCAGAGCTTTCTT--TTTTGCGGGAAAGCGGAGATTGCAATGCTGTTACTCCAAC
CAATTCTCGCATATTTATATTTTAACGAATGAATTTATATTCTACACAATATTTTACAGAATAGATGTCCAATACCGCGA
CAAGCCAAGCATATCGGTTGAATGATGCTGCACGATCAAGGGGTCTGATTCCACACAAAACATTGAGTTTTGCACGGTTG
AGGAACACCATCATCATATAAATTTTATTTTTCCTTGTGTTAGTGAGAAATAAGAAAAACTAGAAGATCAAAACCCACAT
AGTAAGCA----TACCGTTCGTTGAGATTTTGGTAGCAGCGATAAGTAATTTGTACATGCATAGATTTCCCCGTAACAAA
GAATAAGAAATGGCGGCAAGCAGCATAGTAATCCTAACGAGGCCCCGAATAGATCCAAAAGAGTTGATTAAGCTACTAAG
GTA---TTACTTAGCACCCAGCAGGAACACAAA----GCAACGATCCTCTCATCAGAAATCAGAAGCAGCAGCTACGTA-
---CTGCAAGCATCAACAATGGCGGCTTCAGCTTGGTCGAAGCTCGCCCTTCTTCTCTGCTACTTTGGCTTGAAGGCCTT
CGTATTCGGCATCGTTGCCGAAAACAAAAAGGTAAATTGCTCGTCCTGTTCATCTGGTTCATTTGTTCACTTGTGTTGAT
TATTAGGTTATTATTTCCAAAATACTAAACCTACGGGATGCCTCTATCGATTGCAGCCTCAGTTTGGAACAGGTACCGTC
ACCGGAGATGGTTATGTCATGTGCGACTTCTCACGTCTCAGCGTGGTGATGGGGATCCTCTCGGTGATCTCGCTGCTAAT
CACCATCCTCATCGGCCACCGTGCCGTCTTCTACCCCTACCCTACCAACAAGACCAACCAGCAACCTGCATCAGTTCCTC
GCCGAGCTCTGCTTCGAAGCACCATCCTCATAGTCTTCTTCATCGTCGCCGAGTAACTAAATGAACCCTTTTATTTAGCT
GGCTATCTAAGTACTCCCTCGGTAAAGTAATACAGCG-----------------TCGTTTAGATCACTACTTTATTGATC
TGAACGATCCTATATTAACGATCCTATATTAGTTTACAAAGGGAGTAATTAATTAAGGTCGTTCATCAA-TTATCTGTTT
TGTGAAG-TAACTAATTACCATTTCTCCATGGGATTAATCATGAAAATAGGTTGGTCTCGGTTTCGGCTTTGGTGATGCT
GGTGGGAGCGACCAAGACGCAGGCGGCCAACCTCCGGTACCAGCTGCGAATACAACCTGACGGCACCATGAGCTGCCCGT
CAAACACGGACAAGATGGACGGCCACTTCGGTGGAGGCGCCCTGCTGGCCCTTGATGCCGCGCTCATCTGGTTCGTCTGC
CAGCTGCTCGCGCTCGAGGCCCGGGCTAACTACCTCGACCGTCTCCCCGGGGATGATGAGGACTACGATGACAACAACAA
GAAACATGATGGCGACAATGTAGCCTCTGAGGACCACAGTCAGCTAGCATAATGG--------------TGCCACCTTAT
CCACCATGAGTCAAAACCATGCCATGTTGTAATGAAGCCATTTAAACAGGGTGGAAAGACATAAAACCTATACCAGCATT
TCAATGACAAAACTATACTCATGTTTGTTAGAAAGCGCTTTGCTAGTTATGTACTGAATAAT------------------
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--------------------------GATGCACAGAGCCAATACCAACATACATATAC--AAAAT--ATGTCGAAAACTA
GTAAAGTCGTAAAAGACCAAAGCTACGTGTAGGTGAGGAAAAATGAAATAGAAAACCCGAAGTGTTTAGATCCATGATTG
GCAAATTGTACCAAACGACCATATCTATACCAACCAATTTATGACACCACATG-ACGACGATATTCTTCAAAAGGAATGC
CTTCAGAAAGGGAGCGACTTTCATGCGCTGCCGTCATCAGATCCAACCAC--AAGGCTAGAATCCAGATTTTCACCCTGA
AAAAAAAGTCTAAGCATATG-GAGCAATGCCTTCAACAAGGTAACGACGCAA---A--GACATCGCCATTGCAAG---GT
ATAACCAACTAGGATC-----TAGGCTTTCACCCTGGAGTCTCAAGACCGGGTG--CACGTAGCACCAAAATTGAAGTCA
GTCAAGTGTTATCGCCACCACTATTCTGCGATCACAGCAGCTAC-----AA------GCGATGTGCGACCGCCGCCACTG
CACAACCATTCATTTGCGTCAAGTCTTTGTCCATAGTTTGCATAACAACGCCATAGTCAACCACCGGATCTGGAGAGACT
AACCTTCTCCAAAGACCTTTTGGCGACCACCATCATTGTGGA
>chr3B_1
GCCTCCGGGAAGCTCGCCAGGTTCTCCCTGACAATCGCCCGCAGCTCCGCGTAGGAGTATTGGGAGAAGAGGTCGTCCTC
CATCGGCTCGTCCGTCGTCGACGGCAAGCCCTCGCTCCGGTGGAT------CGGATCAATCGGAAGGCAGACGTACGTAG
AAGA--------------------------------CGTCCTCGAACCCTCGATCGATACAACAAGCCAGACGGCAATGG
GCTTTGCAGACCA---GGCCCGGTCAGCTGTACATTGCACTGGGCCTTTTCT---------------------CGGCCTG
TTTTGCTTGAGTATATTGTCGAAGAAAATATAGTTTTCCCCCTCAAATCCATATTGATGGATCCATAACCCCCTGAACTT
GAATACCATATAATTTATCCCCTCAAATTGGCAAAACCAGATAAATCAGGCCCCATAGTGGTTTTGGGTCACATTGAAAC
CGGTTTTGAGTGCTGGCCAGAATAAAAACAGATAAGCCAGAGGATTTAATTTTCTTTTGCCGAGCGGCACCATAGCTTCG
AGTGCTCCGCCACCAAGGAGAGCACGGCGCCACGGAAGCGGCGCGACCGTCGGCGAATTGGACGAGACGCGCGACAATGT
CAAGCGCGGCCACATCGGCTTCGGCGAGGAGGACGGCTTCATGCCCGGTCGTGTCGTGCGGGTGTTGTGCAGCTTGTTCG
TTCTTGCCGGAACGATCGATCTACCCGGCCGACTCTGTTTGCTAGGTGCACAAGCCAAGCCAACTTCCAATGAAAATCCA
TCATCTTAGCTCCTGTGTACGTGCGCGTACAAGCGTTCTTGCCGGAAGGAATCCCCACCGTCCGCCGTGTCGGACTTGCT
GTCAGCCTGGACCGCCTCAGCCTTATCCCTTGCGCCAGCAGCCTTGTCTCTCCAGTCCCCATGCACTATCCACTCCTCGC
ACTTATCTCCCTCCCTCCTCTCTCTCTATCTCGTTCCTGCTCCAGAGAAGGTCGCCGACGTCGCCGTTTGTCGTCCTCAT
GGCAAGAGACCACCCCGAGCCAAGCTGACGTGTCCTGTAGATCCGCCTCGTCGCCCTCTTCGTTCCTCTAGAAGGAATCG
CGCCAAGCCGCCATAAATCGACGGCATGGTCTTTGTCTTCTCTGCCGGCCGCCGCCATTGCTCGATCTCCACCTCCGGCG
AAACCCCGACGCCTCTTCTAGCCTCTTTGACTCCCGAGGCACGTCGCCACCAGCGCAGGCCTTCCCGAGGCCTTCTTCGT
GAGGCTATCCTCTCACATACGCCGTCGGCACCTCGCTCTCGCGATTTGCCACGGCCGCCACTTGGCATTTTCTTTAAATC
ATCTGGCTTAGTTGTGTTGACTCTGGTCAGCACTCAAAACCGGTTTCAATGTGACCCAAAATCACTACGGGGCTTGATTT
ATCCGGTTTTGACAATTTGAGGGGGTAAATTATATGGTATTGGAGTTCAGGGGGTTATGGATCCATCAATATGGATTTGT
GGGGGAAAACTATACTCAATGCTACCCTTATTTTGCTCAAAAAAAAACAATGCT--ACCCTTATGTTCTCGAAAAAAAAA
ACTTATGATCTAAAACCCT-AAAAAAACTTTTGTTCTCCAAAAAAATTTACTGCACAAACATATGGGACTGCGCTTACGA
AAGCCATCATGTAATCACGTGGTTAGCAGAGATTT-TTTCTTTTGCGGGAAAGCGGAGATTGCAATGCTGTTACTCCAAC
CAATTCTCGCATATTTATATTTTAATGAATGAATTTATATTCTACACAATATTTTACAGAATAGATCTCCAATACCACGA
CAAGCCAAACATATCGGTTGAATGATGCTGCACGATCAAGGGGTGTGATTCCACACAAAACATTGAGTTTTGCATTGTTG
AGGAACACCATCATCATATAAAATTTATTTTTCCTTGTGCTAGTGAGAAATAAGAAAAACTA--------AACCCCACAT
AGTAAGCA----T-----TCCTTGAGATTTTGGCAGCAGTGATAGGTAATTAGTACATGCATAGATTTCCCCGTAACAAA
GAATAAGAAATGGCGGCAAGCAGCATAGTAATCCTAACTAGGCCCCTAATGGATCCAAAAGTGTTAATTAAGCTACTAAG
GTAGTATTACTTAGCACGCAGCAGGACAACAAA----GCAACGATCCTCTCATCAGAAATCAGAAGCAGCAGCTACGTAC
GTACTGCAAGCATCAACAATGGCGGCTTCAGCTTGGTCGAAGCTCGCCCTTCTTCTCTGCTACTTTGGGCTGAAGGCCTT
CGTTTTCGGCATCGTTGCCGAAAACAAAAAGGTAAATTGCTCCTCATGTTCATCTGGTTCATTCGTTCGGTTGTGTTGAT
TATTAGGTCATTGTTTCGAAAATACTAAACCTACGGGTGCCTTGG-TCGGTTGCAGCCTCAGTTCGGAACTGGAACCGTC
ATCGGAGATGGTTATGTCATGTGCGAGTTCTCACGTCTCAGCGTGGTCATGGGGATCCTCTCTGTGATCTCGCTGCTAAT
CGCCATCCTCATCGGCCACCGCGCCGTCTTCTACCCCTACCCTACCAACAGGACCAGCCAGCAACCCGCAACGGTTCCTC
GCCGAGCTCTGCTTCGAAGCACCATCCTCATAGTCTTCTTCATCATCGCCGAGTAACTAAATGAACCCCTTCATTTATC-
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--------------------------------------------------AAATATGGTCGTTCATCAAATGATCTGTTT
TGTCACGTTAACTAATTACCATTTGTCGATGGGATTAATTGTCAAAATAGGGTGGTCTCGGTGTCGGCTTTGGTGATGCT
GGTGAAGGTGACCAAGGCGGAGGCCGCGAACCTCCGGTATCAGCAGCCGATGCAACCCGACGGCACCATGAGCTGCCCAT
CGATGACGGGCAAGATGGACGGCCACTTCGGTGGAGGCGCCCTGCTGGCCCTCGACGCCGCGCTCATCTGGTTTGTTTGC
CAGCTCCTCGCGCTCGAGGCCCGGGCTAACTACCTCGACCGTCTCCCCGGGGATGATGAGGAGGACGAGGAGAACAACAA
GAAACATGATGGTGACATTGTAGCCTCCCCGGACCACAGTCAGCTAGCATAATGGCGGCCGTGAGACAGTACCACCTTGT
CCACCATGAGTCAAAACCATGCCATGTTGTAATGAAGCCATTTAAACAGGGTGGAAAGACATAAAACCTACACCGGCATT
TCAATGACAAAACTATACTCAACTTTGTTGGAAAGCGCTTTGCTAGTTACGTACTGAATCATTTGTAAACAGCCCATGGA
ACAACCGTTAGTTAAATGTGCGACTGGTGGGGTGGTT-------------------------------------------
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>chr3D_2275
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---------------TTTTGACAAAGGGTGG-ATTTTATTTGCTCAAAAAGCAACATCGAGATGATACAAACCTAAAAAG
CACTTACCCGGCCTCTGCACAACTAGGATGCACACAGCCTACACCAACACACTCACAC--AAAAA-CACTCTAG---ATA
GCAAAGTTATATAAGACCAAAGCTATGTGTAGGCGAGTAAAAG-----A--AAAACCCGAAGCGATCAGATCCACGATCG
GCAAACTACATC-AGTGCTCATATCCGCATCAACCATCTCATGAGACCACACAGACCACGAGGT-CTTCGACAGCAA-GC
CTTGAAGAAGGAAGCGACACTCAAGTGTTGCCGTAACCGGATCCAACCACC-AAGGCCTGAATCTACGTTTTCATCCGGA
AGAAACAATCGAAGCATATCCGAGCAATGCCTTCAACAAGGTAATGATGTAA---AAGAACACCGCCATTGCCAG---GT
ATAACCAGCTCGGCTCA-ACCTAGGCTTTCACCC-GGAG-CTTGCGACCGAGTG--CTCACAACACCAACATCATAGTCA
CTCAAGTGTTGTTGCCACCCCTTTTCCGCAATCCTAGCAGCTAT-----ATGCAA--------TGCGATCGCCACCACTG
CACAACTATTCCTCTGCGTCAAGCCGCCATCCATAGTTTACATCACACCGCCAAAGTCAACCATTGGACATAGAGAGATG
AACCCTC-CCGAAGATCCCTCGGCGACCGCCGCCATCGTGGA
>chr5D_2275
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---------------TTTCGACAAAGGGTGG-ATTTTATTGGCTCAAAAAGGAGCATCAAGAGAATACATACCCTAAGAG
CACACACCAGGCCTCTGCATAACTAGGATGCACACAGCCAATATCAACACACGCACAC--AAAAAACACGCCGAC-AACA
GCAAAGTCATATTAGACCAAAGCTATGCGTAGGCGGGGAAAAATAAAAGAGTA----CAAAGTGATCAGATCCATGATCG
GCAAACTACAAC-AATGACCATATCCACACCATCCATCTCATGACACCGCACAGACGACGGAGTTCTTCAACAGCAACGG
CTTCAAGAAGGAAGTGACACTCAAGCATCATCGTCACCGGATCCAACCACC-AAGGTTAGGATCTAGGTTTTCACCATGA
AGAATCAATCTAAGCATATCCGAGCAATGCCTTCAACAAGGTAATGATGTAA---AA-TACATCGCCATTGCCAA---GT
ACAACCAGCTTGGGTCAGACCAAGGCTTTCATCCTGGAG-CTCGCGACCTGATGCTT-AGTAGCAC---CATCGAAGTCA
-TCAAGTGTTGTCGCCACCATTTTTCCACAATCCCAGCAGCTA-GTGCGATGTCC------------GCCGCCGCCGCTC
CACAACCATTCATTTGTGTCAAGTCGCTGTCCATAATTTGTATCTCACCGTCGAAGTCAACCAGTGGATCTTGAGA----
------------------------------------------
>chr5D_2275
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---------------TTTCGACAAAGGGTGAAATTTTATTGGCTTAAAATGGAGCATCAAAAGGATATAAACACAATGAG
CATACACCCGGCCTCTGCATAGCTAAGATGCACATAGCCAACACCAACAGACGCACGC--AAAAA-CACGCCATTAAATA
GCAAAGTCATCTAAGACCAAAGCTATGCATGGGCGAGAAAAAA-AAAAGAGAAACCCCAAAGCGATCAGATCCGCGATCG
GCAAACTATATT-AATGACCTTATCCGCACCGACCATCTCATGACATCACACGGATAATGAGGTTTTTCAACAGCAACGC
CTTCAGGAAGGGAGCAACAGTCAAGTGTCGTCGTCACCGGATCCAACCACCCAAAGTCTGAATCTAGGTTTTCACCCCGA
AGAACCACTCTGAGCATATCCGAGCAATGCCTTCAACAAGGTAACAAC--AA---AA-AACATCGTCATTGCCAG---GT
ATAACCAACTCGGTTGC-ACCTAGGTTTTCACCCCAGAG-CTCGAGAGCATGTGCTCAAGTAGCACAACCATCAAAGTCA
CTCATGTGTCGTTGCCACCACTTTTCCACGATCCCAGCAGCTAC-----ATGCTTGCGCGATGCGTGACCACCGCCACTG
CACAATCATCCCTTTGCGTCAAGTCGTTGTTGATAGTTTGC---------------------------------------
------------------------------------------
>chr5A_2275
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---------------TTTCGATAAAGGATGG-ATTTTATTAGCTCAAAAAGGAGCATCAAGAGGATACAAACCCAAAGAG
CACACACCCGGCCTCTGCATAGATAGGATGCATACAACCAACACCAACACACGTACACCAAAAAA-CACGCCAG---ATA
GCAAAGTTATATAAGACCAAAGCTATGTGTAGGCGAGTAAAAG-----A--AAAACCCGAAGCGATCAAATCCACGATCA
GCAAACTATATC-AACGACCATATCCGCACCACCCATCTCATGACATCACACAGACGACGAGGTTCTTCAACAGTAACAC
CTTCAAGAAGGGAGCAACACTCAAGTGTTGCCGTCACCGGATCCAACCACC-AAAGACTGAATCTAGATTTTCACCCTGA
AGAATCAGTGCAAGCATATCCGAGCAATGCCTTCAACAAGGTAACGATGTAAAAAAA-AACATCGCCATTGCCAG---GT
ATAACTAGCTCAGGTCA-ACCTAGGCTTTCACCCCGGAT-CTCGTGACCGGGTGCTCA--CAGCACCACCTTCGAAGTCA
CTCAAGTGTTGTCGCCACCACTTTTCCGTAATCTCAGCAGCTAC-----ATACA----------ATGACCGCCGCCACTA
CACAACCATTCCTATGTGTCAAACCGACGTCTATAGTTTGCATCTCACCACCGAAGTCAACC------------------
------------------------------------------
>chr5A_2275
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---------------TTTCGATAAAGGGTGG-ATTTTATTGGCTCAAAACAAAGTATCAAGAGAATACAAACATGATGAG
CACACACCCGGCCTATGCATAGTTAGGATGCACACAGCCAACACTAACACACACA-----AAAGCACATGCGGGCAAATA
TCAAAGTCATATAAGACCAAAGCTATGCATAGGCGAGGCAAA--AAAAGAAAA----CTAAGTGATCAGATCCTTGATCG
GCAAACTATAGG-AAAGACCATATCCGCACCAACCATCTCATGACAATACGTGAACGACGAGATTCTTCAACAACAACGC
CTTCACAAAGGGAGCGACGCTTAGGCGCCCGCGTCACCGGATCCAACCACCGAAGGATAGAATCTAGGTTTTCACCTTGA
AGAAACAGTCCGAGCATATCCGAGCAATGCCTTCAACAAGGTAACGACGTAT-----GAATATCGCCATTGCCAA---GT
ATAACCAACTCGGGTCAGACCTGGGCTTTCACCCTGGAG-CTCGATACTAGGTGCTCAAGAAGCACCACCATTGTAGTCA
TTCATGTGATGTCGCCACCACTTTTCCGCAATCCGAGCAGCTAC-----ACGCTACCAA----------CGATGCCGCTG
TACAACCATTCCTCTGCGTCAAGCCGCCATCCATAGTTTGCATCTCATCGCCGAAGCAC---------------------
------------------------------------------
>chr6B_2275
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---------------TTTCGACGAAGGGTGG-A-TTTATTGGCTCAAAAAGAGCATC--AAGTGACACATACCCTAAGAG
TGCACACCTGGCCTCTACATAGCTAGGATGTACACAACCAACATCAACACACGCACAT--AAAAAACACGCTGGCAACAA
CAAAAGTCATATTAGACCAAAGCTATGCGTAGGCGGGAAAAAA-GAAAA--AAAGTCCAAAGTGATCAGATCCATGTTTG
ACAAACTACAAC-AATGACCATATCCACACCATCCATCTCATGACACCACAC-AACGACGGAGTTCTTCAACAACAACGC
CTTCAAGAAGGAAGTGACACTCAAGCGTCACCGGCGCCGGATCCAACCACC-AAGGCTAGGGTATAGGTTTTCACCCTAA
AGAATCGATCTGAGCATATCCGAGCAATGCCTTCAACAAGGAAACGACGTAA---A--TCCATCGCCATTGCCAG---GT
ACATCCAGCTTGGGTCAGACCAAGACTTTCACCCCGGAG-CTCGCGACCTGATGCTTGAGTAGCAC---CATCGAAGTCA
-TCAAGTGTTGTCGCCACCACTTTTCCACAATCCCAGCAGCTACGTGCGATGCG----------GCGGCCGCCGCCGCTC
CACAATCATCCCTTTATATCAAGTTATCGTCTGTAATTTGTATCTCACCATCGAAGTCAACCATTGGATCTTGAGA----
------------------------------------------
>chr7D_2281
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---------------------CAAAGGGTGAAATTTTATTGGCTTAAAATGAAGCATCAAGAGAATACAAACACAATGAG
TATACACCCAGCCTCTGCATAGCTAAGATGCACACAGCCAACACCAACACACGCACGC--AAAAA-CACGCCATCAAATA
GCAAAGTCATGTAAGACCAAAGCTATGCATGGGCGAGAAAAAA-AAAAGAGAAACCCCAAAACAATCAGATCCGCGATCG
GCAAACTATATT-AATGACCTTATCTGCACCGACCATCTCATGACATCACACGAACAATGAGGTTCTTTAACAATAACGC
CTTCAGGAAGGGAGCAACACTCAAGTGTCGTCGTCACCGGATCCAACCACCCAAAGTCTGAATCTAGGTTTTCACCCCAA
AGAACCATTCTGAGCATATCCGAGCAATGCCTTCAACAAGGTAACGACATAA---A--AACATCGTCATTGCCAG---GT
ATAACCAACTCGGTTGC-ACCTAGGTTTTCACCCCAGAG-CTCGAGAGCATGTGCTCAAGTAGCACAATCATCAAAGTCA
CTCATGTGTCGTCGCCACCACTTTTCCACGATCACAACAGCTAC-----ATGCTTGCGCGATGCGCGACCGCCGCCACTG
CACAATCATCCCTCTGCGTCAAGTCGTCGTTGATAGTTTGC---------------------------------------
------------------------------------------
>chr7D_2282
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----------------------AAAGGGTGG-ATTTTATTAGCTCAAAGAGGAGCATCAAGAGGATACAAACCCAAAGAG
CACACACCCGACCTCTGCATAGCTAGGATGCACACAGCCAACATCAACACACACACTA--AAAAA-CACGCCAG---ATA
GCAAAGTCATATAAGACCAAAGCTATGTGTAGGCGAGTAAAAG-----A--AAAACCCGAAGCGTCCAGATCCACGATCG
GCAAACTATATC-AACGACCATATCCACACCAACCATCTCATGACATCACACAGACGACGAGGTTCTTCAACAGTAACGC
CTTCAAGAAGGGAACAACACTCAAGTGTTGCCGTCACCGGATCCAACCACC-AAGGCCTGAATCTTGGTTTTCACCCTGA
AGAATCAGTGCAAGCATATCCGAGCAATGCCTTCAACAAGGTAACGACGTAA---AAAAACATCGCCATTGCCAG---GT
ATAACCAGCGCTGGTCA-ACCTAGGCTTTCACCCCGGAT-CTCGCGACCGGGTGCTCA--CAGCACCACCTTCGAAGTCA
CTCAAGTGTTCTCGCCACCACTTTTCCGTAATCCCAGCAGCTAC-----ATACG----------ATGACCGCCGCCACTG
CACAACCATTCCTCCGCGTCAAGCCGACATCTATAGTTTGCATCTCACCACCGAAGTCAACCATTGGACATAGAGAGATT
AACCCTC-CCGAAGATCCCTCGGTGACCACCGTCGCCGTGGA
>SNPs
------------------------------------------------S-------------------------------
------S--------------------------------S-SSSSSSSSSS-----------------------------
--------------------------------------------------------------------------------
-S------SSS--SSS----------------S--------------------S--SSS-SSSSSSSSSSSSS-------
------------------S-S--SS-------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------S-SSSSSSS--------------S---------
-----------------S-S--------------------------S-----------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S--------------S-S-----S--------S--------------------S--
------------------------------------------------------------S-S----S------------
--------SSSS---------------------------------S-----S----------------------------
------------S----------------------------------------------------S--------------
---------------------------------SSSS-------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S-------S-------S------------------------S-----
---------------S-S---S----------------------S-----------------------------------
-----------------S---------------------------------------------S----------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
--------------------------S-----S--S-SSSSSSSSSSSSSSSSS--------------------------
-----S---S-------------------------S--S-----------------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
-------------------S--------------------------------------S-S-------------------
-----------------------------------------------S---------------S--S-------------
----S----------------------------------------------------S-S-SS-----------------
-------------------------------------------------------------------------------S
------------------------------------------------------------------S-------------
-S-------S-S------S------S--S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS---------------------------S------------------S-S----------------
----------S------------S--------S----S------------------------------------------
S---------------------S-------------------------S----------S-S-----------------S
-----------------------------S--------S---------------S----S-----------S--------
---------------------------------------------S---S----------------------------S-
--S-------------------------------------S----------------------------------SSS--
---S-----------S---S------------------------S---------------------S---S---------
---------------S------SS-----------S-S------------------------------------------
-------------------------------------------------------SS-----S--------------S--
-----------------S------S----S------------
>forward_1882
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----------------------TGGTGCTGCACGATCAATGT--------------------------------------
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>reverse_3479
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--------------------------------------CACTCACCCACGCCTATGTT----------------------
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------------------------------------------
