>input_sequence_63655
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--------------------------------------------------------------------------ACCTCA
AATCTCAAAGTCAC------ACAACCAAGCCGAGAACCGCCGCGTGCAGCAGCCAGGGCCGCGCCTTTCCCCGTCCTTCT
CCGGCGCCGACCATGGCCGTCGACTTCGTGGGACGCGGCCACGCCCCCCGTGGCCTCGCCCTGGCGGGCGGGCAGCAGCA
GCTGGCCTTCCACGAGGCCGCCGCGGCGGGGCTCAGCAGCCTCGAGCTCCTCGTCTCGGCGCTCTCCCCCCGCGCTGACT
GCGCACCGCCGCCGCTCGGGGAGATCGCCGACCAAGCGTTATCGGGGTTCCGCCGGGTCATCGACATCCTCGGCCGCACC
GGTCACGCCCGCTTCCGCCGCGGCCCTGTTGGAGGAGGCGCCGCCTCGTTGACTCCCCCTCCTG---TCTCTTCTCCTCC
TCGGATGCCGGCCCGGCCACCGGCACCGGCAGC------CTCGCAGCAGTTGGCGCCCCAGAAAAGCCTGACGCTGGACT
TCACCAAGCCTTCGAAGACGCCGGCAGCGGCA------GCCGCTGCTTCGGTGACGTCGACGTCTTTCTTCTCGTCGGTG
ACGGCGGGGGGCGAGGGCAGCGTCTCCAAGGGCCCGAGCCAGCTGGTGTCCTCCGGAAAGCCGCCGCTCGCGGCTGGCAC
CAAACGCAAGCAACAGCAGCAGCAGACGCCCTGCGCGAGCGCCGCGCACTCCGAT---GCCGCTGCCGCCGCCGGTGGCC
GGTGCCACTGCTCGAAGAAGCGCAAGCACCGGGTGAAATACACCACGCGCGTGCCCGCGGTAAGCTCGCGCACGGCGGAC
ATCCC------CGGCGACGACTACTCGTGGCGCAAGTACGGGCAGAAGCCCATCAAGGGGTCCCCTTACCCCCGCTGCTA
CTATAGGTGCAGCACCGCCAAGGGCTGCCCGGCGCGGAAGCACGTCGAACGCGCCACCGACGACCCCGCCATGCTCATCG
TCACCTACGAGGGTGACCACCGCCACGACACTTTGCCGCCGGCCGCCGCAAATTGA------------------------
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>chr5B_1_TraesCS5B01G375100
TGCCGGTCACCGACAGAGGCGGAGGCGAAGGACCGACAACTCCGAAGGATCAACACCAAGCA-GCTCCGGCTCAGCATTG
AGCAATCCGAGTGGGAGGCGGCGGACGGAGCGGCAGAGGCGGCGAGGGTGGCCAAGC-TCAAGCGTAAGCA-AGACCATG
TCGTCCGGTGTTTGCAAGGCTACATCGTCATCTCTGGTTCCTCGCGACGATGACAGG---TCTGACAACTCCCACGTGGA
CCCACCTCCTGCCGCAGACTC-----CTAGAGCTATGACGGCGATCGGAAGGGCACAGGGCTGGCGAGGAAGTGGTGAAG
CTTGCCCTCTCCTGTT-TATAATCTAGTTGTAGTATGTAGTTACAATGTGTCGGATCGTTGAACTATGTGGCTTCCCCGT
TTGGTGATCTATTGAGTGATGTTTATGTGAATTGTGCGAGTTTGGTACCAGTTTGTACGTTCGTTTCATGTTGATTTT--
-GATCGTTTCGTGATCTACGTACTAG--TTGCATGAATTTGTATGGATATAGGGTAATGAATATGAGATATGCGGGTGTG
GAGGCCTAGATTTAGGGAGTGCAAGGT-GC-GTCCGCGGACGTATAGGAGGTCAGATTTGTCAACTCCGGCTGCAGATGC
TCTAAATTTGAGGGGTGACCGTTCACG------GTCCGCTGATATTTG-AGGGTCTGATTTTGTGTATCTGATGAGTATA
ATAAACTACTCTGGGGTTGAGGCAGTTG------TTGGAACTAGGAAGCTTGCCACCCGTTTCCAAGGGCTGACTTCCAA
GGCAAGTCAGATTGCGCATCTCCACTCCACCTCC-GCCGAATATTAAAAAGGAGGAGACCGAGATGACATTTTTCGCTGT
ATTCTATGCGCATCTCCAAAGTCCAACCCATTCCTGATATCAGTGCTTTGTGTTTCCTTTTGCTGCTAACCAATCCATTG
ACTTGCATCCATACTCTGCTCCTCC-ATTTCAACTTTTGTTATAAAACCCCTCGGCCTCCGTCCATCCATTTGCACCTCA
AATCTCAAAGTCAC------ACAACCAAGCCGAGAACCGCCGCGTGCAGCAGCCAGGGCCGCGCCTTTCCCCGTCCTTCT
CCGGCGCCGACCATGGCCGTCGACTTCGTGGGACGCGGCCACGCCCCCCGTGGCCTCGCCCTGGCGGGCGGGCAGCAGCA
GCTGGCCTTCCACGAGGCCGCCGCGGCGGGGCTCAGCAGCCTCGAGCTCCTCGTCTCGGCGCTCTCCCCCCGCGCTGACT
GCGCACCGCCGCCGCTCGGGGAGATCGCCGACCAAGCGTTATCGGGGTTCCGCCGGGTCATCGACATCCTCGGCCGCACC
GGTCACGCCCGCTTCCGCCGCGGCCCTGTTGGAGGAGGCGCCGCCTCGTTGACTCCCCCTCCTG---TCTCTTCTCCTCC
TCGGATGCCGGCCCGGCCACCGGCACCGGCAGC------CTCGCAGCAGTTGGCGCCCCAGAAAAGCCTGACGCTGGACT
TCACCAAGCCTTCGAAGACGCCGGCAGCGGCA------GCCGCTGCTTCGGTGACGTCGACGTCTTTCTTCTCGTCGGTG
ACGGCGGGGGGCGAGGGCAGCGTCTCCAAGGGCCCGAGCCAGCTGGTGTCCTCCGGAAAGCCGCCGCTCGCGGCTGGCAC
CAAACGCAAGCAACAGCAGCAGCAGACGCCCTGCGCGAGCGCCGCGCACTCCGAT---GCCGCTGCCGCCGCCGGTGGCC
GGTGCCACTGCTCGAAGAAGCGCAAGCACCGGGTGAAATACACCACGCGCGTGCCCGCGGTAAGCTCGCGCACGGCGGAC
ATCCC------CGGCGACGACTACTCGTGGCGCAAGTACGGGCAGAAGCCCATCAAGGGGTCCCCTTACCCCCGCTGCTA
CTATAGGTGCAGCACCGCCAAGGGCTGCCCGGCGCGGAAGCACGTCGAACGCGCCACCGACGACCCCGCCATGCTCATCG
TCACCTACGAGGGTGACCACCGCCACGACACTTTGCCGCCGGCCGCCGCAAATTGAAGCTCCCTGGCAGCGACAGCCGAC
AGGACTGGATGTGTTCTTCCGTTTGTTCTTTGTACACGACCTACACATGCATGTACACCACTAACTTCG-AATTTTGTTT
TTGGACTTCAAATTTATTTTCT------TACATATGTATGCAGTATACTTGCGCGAGAAACATAGTGAGAGCATCTACAG
CCGGAAGTCTCAAGCATCCTATATAAGTCCGGGCGGACGGCCCAATCACTAATTGTTAAAAAACTCAACCGACACACACG
CCTCAATAACCGGCCTCAAATGTCCAGACTTATCGGCACTCCTCATATACAACCCAAATCTAGGGCGGGTTCCGGGAGGA
CCGGGCGGGTTTCGGAAGGAACTGGCATGCCCGGACGCGTCCGTCATGTTGGATCCGACCCGTGATGGCCCACCTTGACT
CCACATATAGTCGTCCTCATCCGCTCACCGGATCAAACCGGCACTCCACTCCACTCAGCTCCGCCCT-AAGCTCCCTTTC
GGCGATCTCTGGCCGTCTCCGACATGGCGGGCAGCGGATCTAACTCCGACCACTCCTAATCCATCAATTGGGGCATCATT
CCATGTAGGGAGGAGGTCAGGAGGAGGTTGTGGCCGTTCGCATGGCCCTCGGCAGCTCCCGGGAGGAGTGCGCTCGACCT
AGGTAGGATTCGATCTGGCATGAATCCACTTTGTCGGCGCAACAAGCGCTCGGATCCGACGGGGATGGAAGCTCGAGGTC
CATCTTGCGCCCCTTCTCCGGTCCGAAGGAGTACAAGGGCTATAGGGATAGGTGTGCTCGCTGTAAATAAGCAGATGGGG
ACGGGAGTGCGAGGCCCGCCTTGCTG-------------TCGATGTGGCGGAGGTGGCGGCACACGCTGCCGCAGAAGA-
GAAGTCATCCGTGTCCGCATCA-CCACAAGCGGCAAAGGATGAACACACACGCCCTCGTCCGAGAACAATCCTGGGCGGT
CCGTGCCATAGCCATACTGCCCCCCAAAGAGGAGGGGCG
>chr6A_1
TGCCGGTCACTTACTGAGGCGGAGATGAAGGCCCGGCGGTTCCGATGGATCAACGACAAGCA-GCTCCGGCTCGGCATTG
AGCAATCCGAGCGGGAG------------GCGGCAGAGGCGGCGAGGGTGGCCAAGCCTCAAGTGCAAGCA-AGACCGCA
TCGTCCGGCGCTTGCCAGGCTACATCGTCATCTCCGATTCCTC-CTTCGACGACGGG---TCCGACGGCTCCGACATGGA
CCCACCTCCTGCCGCGCACTC-----CTACAAATGCATCGGCGACCGGAAGGGCAAAGGGTCGGCGAGGAAGTGCTGAAA
CTCGCCCTCTCCTGTT-TATAATTTAGTTGTAGTATGTATTTACAATGTGTTGGATCATTGAAATGTGTGACTTGCTCGT
TTGATGATCTTTTGGGTGATGTTTATGTGAATTATGCCAGTTTGGTATCAGTTTATATGTTGTTTTCCTGTCAATTTT--
-AATCATTTTGTGATCTACATACTAG--TTGCATGAATTTGTATGGATATAGGGTTTGAAATACGAGATACATGAATGTG
GAGGCAGGGATTTAGGGAGTGCCCGGTTAGTGTCCGCGGGCGTATAGGGGTCCGGATTTGCCAACTCCGGCGGTAGAT--
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>chr6B_2
-GCCGGTCACTTACTGAGGCGGAGATGAAGACCCGACGACTCCGGAGGATCAATGCCAAGCA-GCTCCGGCTCGGCATTG
AGCAATCCAAGCGGGAGTCAGCGGAGGCAGCGGCAGAGCAGT-GAGGGTGGCCAAGC-TCAAGCGCAAGCA-AGACATCG
TGGTCTGACGCTTGCAAAGCTACATCGTCATCTCCGGTTCCTC-CGATGATGATGGG---CCCGATGGCTCTGACGTGGA
CCCACCTCCTGCCGCGGACTC-----CTACAACTGCACCGGCGACCAGATGGGCAAAGGGCTGGCAAGGAAGTGCTGAAA
CTCGCCCTCTCCTGTT-TATAATCTAGTTATAGTATGTATTTACAATGTATCGGATTGTTGAACTATGTGACTTACGCAT
TTGGTGATCTTTTGGGTGATGTTTATGTGAATTATGCCCATTTGGTATCAGTTTATATGTTTGTTTCATGTCAATTTT--
-GATCGTTTCGTGATCTACATACTAG--TTGCATGAATTTGTATGGATATAGGGTTCGAAATATGAGATACGCGGGTGTG
GAGGCCCGAATTTAGAGAGTGC----------------------------------------------------------
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>chr6D_2
-GCCGGTCACTTACTGAGGCGAAGACGAAGGCCCGACGGCTCTGGAGGATCAATGCCAAGCA-GCTCCGGCTCGACATTG
AGCAATTCGAGCGGGAGGCGGCGGAGGCAACGACAGAGGCGGCGAGGGTGGCCAAGC-TCAAGCGCAAGCA-AGACATCA
TCGTCCGGCGCTTGCAAAGCTACATCGTCATCTCCGATTCCTC-CGATGACGATGGG---TCCGACGGCTCCGACATGGA
CCCACCTCCTGTCGCGGACTC-----CTACAGGTGCACCGGCGACCGGAAGGGCAAAAGGCTGGTAAGGAAGTGCTGAAG
CTCGCCCTCTCCTGTT-TATAATCTAGTTATAGTATGTCTTTACAATGTGCCGGATTGTTCAACTATGTGACTTGCCAGT
TTGGTGATCTTTTGGGTGATGTTTATGTGAATTATGCCCATTTGGTATCAGTTTATATGTCTGTTTCCTGTCGATTTT--
-GATCGTTTCGTGATCTACATACTAG--TTGCATGAATTTATATGGATGTAGGGTTCGAAATATGAGATATGCGGGTGTG
AAGGCTCGAATTTAGAGAGT------------------------------------------------------------
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>chr4B_2
-GCCGCTCACTGACTAAGGCAGAGATGAAGGCCCGACGGCTCCAGAGGATCAATCCCAAGCA-GCT-CGGCTCGACATTG
AGCAATACGAGTGGGAGGCGGCGGAGGCAGCGGCAGAGGCAGCAAGGGTGGCCAAGC-TCAAGCACAAGCAGAGACCGCG
TCGTCCGGCGCTTGCAAGGCTACATCGTCATCTCCGATTCCTC-CTCTGATGACGGG---TCTGATAGCTCCGACGTGGA
CCCACCTCCTACCGCGGACTC-----CTACAGCAGCCCTGGCAACCGAAAGGGCAAAGGGCCGGCGAGGAAGTGGTGAAG
CT-GCCCTCTCCTGTT-TATAATCTAGTTGTAGTATGTAGTTACAATCTACTGGATCGTTGAACTGTGTGACTTGCCTCT
TTGGTGATCTTTTGGGTGATGTTTATGTGAATTATGCCCATTTGATACCAGTTTATATGTTCGTTTCCTATCGATTTT--
-GATCGTTCTATGATCTACGTAATAG--TTGCATGAATATATATGGATATAGG---------------------------
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>chr1A_2
-GCCGGTCACTGACTGAGGCAGAGACGAAGGCCCGACGGCTCCGGAGGATCAACGCCAAGCA-GCCCCGGCTCGGTATTG
AGCAATCCGAGCGGGAGGCGGCGAGGGTGGCCAA----------------------C-TCAAGCACAAGCA-AGACCGCG
TCGTACGACGCTTGCAAGGCTACATCATCATCTCCAATTCCTC-CTCCTCCTACGGG---TCCGACGGCTCCAACGTGGA
CCCACCACCTGCCGCGGACTC-----CTACAGCTGCGGCGGCGACTGGAAGGGTAAAGGGTCGGCGAGGAAGTGGTGAAG
CTCGCCCTCTCCTGTT-TATAATCTAGTTGTAGTATGTAGTTACAATGTGCCTGATTGTTGAACTGTGTGACTTGCCTGT
TA---GATCTTTTGGGTGATGTTTATGTGAATTATGGCTGTTTGGTACCAGTTTATACGTCTGTTTTCTGTCGATTTT--
-GATCGTTTCGTGATCTATGTAATAG--TTGCATGGATCTGTATGGATATAGGATTCGGAATATGAGATACGCGAGTGTG
GAGGCTTGAATTTAGGGATTG-----------------------------------------------------------
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>chr5D_3
--CCGGTCACGGACAGAGGCAGAGACGAAGGACCGACGGCTGCGAAGGATCAACACCAAGCA-GCTACGGCTCGGCATTG
AGCAATCCGAGTGGGAGGCGGCGAAGGCAGCAGCAGAGCCGGCGAGGGTGGCCAAGC-TCAAGCGCAAGCA-AGACCGCG
TCGTCCGACATTTGCAAGGCTACATCGTCATCTCTGATTCTTC-CTCCGACGACAGG---TCTGACGGCTCCGACGTGAA
CCCACCTCCTTCCGCAGACTC-----ATACAGCTGCGCCGGCGACCGAAAGGGCAAAGGGCCGGCGAGGAAGCGGTGAAG
CTCGCCCTCTCCTGTT-TATAATCTACTTGTAGTATGTAGTTACAATGTGTTGGATCGTTGAACTATGTGACTTCCCCGT
TTGGTGATCTTTTGGGTGATGTTTATGTGAATTGTGCCCATTTGGTACCAGTTTGTATGCCCGTTTCTTGTCGATTTT--
-GATCGTTTCATGATCTACGTACTAG--TTGCATGAATTTGTATAAATATAGGGTAAGGAATATGAGATACGCGGGTGTG
GAGGCCCGAATTTAGGGAGTGCACGGGCGC-GTCCGCGGACGTATAGGAGACCAGATTTGCCAACTCCGGCTGTAGATGC
TCTAAATTTGAGGGATGACCGGTCACG------GTCCGCTGACATCTGAGGGGTCGGATTTTGTGTAGC---TGAGTATA
ATAAACTACTCTAGGGTAGAGGCAGTTG------TTGGAACTAGGAAGCTTGCCACCCGTTTCCAAGGGCTGACTTCCAA
GGCAAGTCAGATTGCGCATCTCCACTCCACCTCCCGCTGAATATTAAAAAGGAGGAGACCGAGATGACATTTTTTGCTGT
ATTCTATGCTCATCTCCAAAGTCCAACCCATTCCTGAGATCAGTGCTTTGTGTTCCCCTTTGCTGCTAACCAATCCATTG
ACTTGCATCCATATTCTGCTCCTCCCATTTCAACTTTTGCTATAAAACCCCTCGGCCTCCGTCCATCCATTTGCACCTCA
AATCTCAAAGTCAC------ACAACCAAGCCGAGAACCGCCGCGAGCAGCAGCCAGGGCCGCGCCTTTCCCCGTCCTTCT
CCGGCGCCGACCATGGCCGTCGACTTCGTGGGACGCGGCTACGCCCCACGTGGCCTCGCCCTCGCGGGCGGGGAGCAGCA
GCTGGCCTTCCACGAGGCCGCCGCGGCGGGGCTCAGCAGCCTCGAGCTCCTCGTCGCGTCGCTCTCCCCCCGCGCCGACT
GCGCGCCGCCGCCGCTCGGGGAGATCGCCGACCAAGCGTTATCGGGGTTCCGCCGGGTCATCGACATCCTCGGCCGCAGC
GGCCACGCCCGCTTCCGCCGCGGCCCTGTTGGAGGAGGCGCCGCCTCGTTGACTCCCCCTCCTG---TCTCTTCTCCTCC
TCGGATGCCGGCCCGGCCACCGGCACCGGCAGC------CTCGCAGCAGTTGGCGCCCCAGAAAAGCCTGACGCTGGACT
TCACCAAGCCTTCGAAGGCGCCGGCAGCGGCA------GCCGCTGCTTCGGTGACGTCGACGTCTTTCTTCTCGTCGGTG
ACGGCGGGGGGCGAGGGCAGCGTCTCCAAGGGCCCGGGCCAGCTGGTGTCCTCCGGAAAGCCGCCGCTCGCGGCTGGTAC
CAAACGCAAGCAACAGCAGCAGCAGACGCCCTGCGCGAGCGGCGCGCACTCCGACGTCGCCGCCGCCGCCGCCGGTGGCC
GGTGCCACTGCTCGAAGAAGCGCAAGCACCGGGTGAAGTACACCACGCGCGTGCCCGCGGTAAGCTCGCGCACGGCGGAC
ATCCC------CGGCGACGACTACTCGTGGCGCAAGTACGGGCAGAAGCCCATCAAGGGGTCCCCTTACCCCCGCTGCTA
CTATAGGTGCAGCACCGCCAAGGGCTGCCCGGCGCGGAAGCACGTCGAACGCGCCACCGACGACCCCGCCATGCTCATCG
TCACCTACGAGGGTGACCACCGCCACGACACTTTGCCGCCGGCCGCCGCAAATTGAAGCTCCCTGGCAGCGACAGCCGAC
AGGACTGGATGTGCTCTTGCATTTGTTCTTTGTACACGGCCTACACATGCATGTACACCACTAACTAAAAAAATTTGATT
TTGGATTTCAAATTTATTTTCTTACATATACATATGTATGCAGTATACTTGCGCGACAAACATAGTGAAAGCATCTACAG
TCGGAAGTCTCAAGCATCCTG--TAAGTCCGGGAGGACGGCCCAATCACTAATAGTTAAAAAACTCAACCGAGACACAAG
CCTCAATAACCGGCCTCAAATGTTCAGACTGACCGGCACCCCTCATATCCAGCCCAAATCTAGGGCGGGTTCCGGGAGGA
CCGGGCG--------------------TGCCTGGATGCGTCCGTCAGGTCGGATCCGGCCCACGATGGCCCACCTCGACT
CCACATATAGTCGTCCCCATCCGCTCACCGCATCAAATCGGCACTCCACTCCACTCAGCTCCGTTTCCAAGCTCCCTTTC
GGCGATCTCCGGCCGTCTCCGACATGGCGGGTAGCGGATCTAACTCCGACCACTCCTAATCCATCGATTGGGTATCGTC-
CCATGCGGGGAGGAGGTCAGGAGGAGGTTGTGGCCGTTCACATGGCCCTCGGCCGCTCCCGGAAGGAGTGCGCTCGACCC
AGGTAGGATTCGATCTGGCATGAATCCACTTTGTCGGCGCAACAAGCGCTCGGATCCGGCTGGGCTGGAAGCTCGAGGTC
CATCTTGCACCCCTTCTCTGGTCCAGAGGAGTACAAGGGTTATAGGGATAGGTGTGCCCGTCGTAAATAAGCAGATGGGG
ACGGGAGTGCGAGGCCTGCCTTGCTGGCCCGCTCTGCTGTCGATGTGGCGGAGGCGGCTACACGCACTGGCGCAGAAGAG
GAAGCCATTCGTGTCCCCATCATCCACAAGCGGCAAAGGATGAAGACACGCGCCCTCGCCCGAGAACAATCCCGGGCAGT
CTGTGCCATGGCCAGACTGCGCCCCAAAGAGGAGGGG--
>chr2D_16
---------------GAGGCAGAGATGAAGGCCCGACGGCTCCAGAGGATCAACGCCAAGCA-CCTCCGGCTCGGCATTG
AGGAATCCGAGCAAGAGGTGGCGGAGGCAGCGGCAGAGGCGGCGAGGGTGGCTAAGC-TCAAGCGCAAGCA-AGACTGCG
CCGTCCGGCGCTTGCAAGGCTACATCGTCATCTCTTATTCCTC-CTCCTCCGACGGG---TCTGGCGGCTCCGACGTGGA
CCCACCTCCTGCCGCGGACTC-----CTACAGCTGCGTCGGCGGCCGGAAGGGCAAAGGGCCGACGAGGAAGCGATGAAG
CTCGCCCTTTCCTGTT-TATAATCTAGTTCTAGTATGTAGTTACAATGTGCCGGATCGTTGAACTATGTGACTTGCCCAT
TTCGTGATCTTTTT-ATGATGTTTATGTGAATTATGCCCGTTTGGTACCAGTTTATATGACCTTTTCCTGTCTTACTTCA
AGATCGTATCATGATCTACGTACTAG--TTGCATGAATTTGTATGGATATAGGGTTTGGAATATGAGATACGTGGTTGTG
AAGGCCCGGATTTAGGGAGTGC----------------------------------------------------------
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>chr2B_18
-----------------GGCGGAGACGGATGCCCGACGGCTCCGGAGGATCAATGCCAAGAA-GTTCCGGCTTGACATTG
AGCAATCCGAGTGGGAGGCGGCGGTGGCAGTGGTGAAGGCGACGAGGGTGGCCAAGC-TCAAGCGCAAGCA-AGACCGCA
TCGTTCGGCGTTTGCAAGGCTACATCATCATCTCCTCCTCCTC-CTTTGACGGGTCCGACTCCGACGGCTCCGACGTCGA
CCCACCTCCTGCTCCTGTTGCGGAGGCCACAACAGCGCTGCCAATCGGAAGGGCAAAGGGCCGACGAGGAAGTGGTGAAG
CTCGCCCTCTCCTTTTATATATTCTAGTTCTAATATGTAGTTAGAATGTGTCGGATCTA--------------TGCCGGG
TTGGTGATTCTTTT-GTGGTGTTTATGTG-ATTATTCCCGTTTGCTATCGGTTTATATGTCTGTTTCCTGTCGATTTT--
-GATCGTTCGATAATTTACGTACTACGTTTGCATTAATTTGTATGGATATAGGGAGCCGCGTATGAGATACGCCGGTGTG
AAGGCACTGATTTAGGAAGTGTTCGGTCAGTGTCCGCGGAC---------------------------------------
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>chr3D_49
------------------------------------------------ATCAACGCCAGGCA-GTTCCGGCTCGGCGTTG
AGCAATCCGAGCAGGAGGCGGCGGAGACAGCGGCAGAGGCGGCGAGGGTGGCCAAGC-TCAAGCGCAAGCA-AGGCCGCG
TCGTCCCGCGCTTGCAAGGTTACATAGTCATCTCTGATTCCTC-CTCCTCCGACGGG---TCTGACGGCTCCGACATGGA
CCCACCTCCTGCCGCGGACCC-----CTACAGTTGCGCCGGCGACC-GAAGGGCAAAGGGCCGGCGAGGAAGTGGTGAAG
CTCGCCCTCTCTTGTT-TATAATCTAGTTGTAGTATGTAGTTACAATGTGCCGGATCGTTGAATTGTGTGACTAGCCCGT
TTGGTGATCTTTTGGGTGATGTTTATGTGAATCATGCCCGTTTGGTACCAGTTTATATGTCCCTTTCCGCTCGATTTT--
-GACCATTTTGTGATCTACGTACTAG--TTGCATGAATTTGTATGGATATAGGCTTCGGAATATGAGATACACGGGTGTG
GAGGCCCGAATTTAGGGAGTGC----------------------------------------------------------
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>chr3A_49
------------------------------------------------ATCAACACCAAGTAGGCTCCGGCTCGACAACG
AGCAATCCGAGCAGGAGGCGGCGGAGACAGCGGGAGAGGCGGCGAGGGTGGCCAAGC-TCAAGCGCAAGCA-AGGCCGCG
TCATCCCGCGCTTGCAAGGTTACATAGTCATCTCCGATTCTTC-CTCCTCCGACGGG---TCTGACGGCTCCGACATGGG
CCCACCTCCTTCCGCAAACTG-----CTACAGTTGCGCCGGCGACTGGAAGGGCAAAGGGCCGGCGAGGAAGTGGTGAAG
CTCGCCCTCTCTTGTT-TATAATATAGTTGTAGTATGTAGTTACAATGTGTCCGATCGTTGAACTGTGTGACTAGCCCGT
TTGGTGATCTTTTGGGTGATGTTTATGTGAATTATGCATGTTTGGTACCAGTTTATATACCCCTTTCCGCTCGATTTT--
-GACAGTTTTGTGATCTACGTAATAG--TCGCATGAATTTGTATGGATATAGGGTTCGGAATATGAGATACGCGGGTGTG
GAGGCCCGAATTTAGCGAGTGC----------------------------------------------------------
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>chr5A_625
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---AAATTTGAGAGGTGACCGGTCATCGTTGGCGTCCGTTGACATTTCAAGGGTCGGATTTGGTGTAGTATGTGAGTATA
ATAAATTGCTCTGACGTAGAGTAGTGGTTGGAACTTGGAACTAGGAAGCTTGCCACCCGTTTCCAAGGGCTGACTTCCGA
GGCAAGTCAGATTGCGCATCTCCACTCCACCTCT-GCCGAATATTAAAAAGGCATGGACCGAGATGACATTTTTCGCTGT
ATTCTATGCGCATCTCCAAAGTCCAACCCATTCCTGAGATCACTGCTTTGTGTTCCCTTTTGCTGCTAACCAATCCATTG
ACTTGCATCATTACTCTGCTCCTCCCATTTCAACTTTGGTTATAAAACCCCTCGGCCTCCGTCCATCCATTTCCAC-TCA
AATCTCGAAGTCATACTTGTACAACCAAGCCGAGAACCGCCGCGAGCAGCAGCCAGGACCGCGCCTTTCCCCGTCC-TCT
CCGGCGCCGACCATGGCCGTCGACTTCGTGGGACGCGGCCACGCCCCCCGTGGCCTCGCCCTCGCGGGCGGGAAGCAGCA
GCTGGCCTTCCACGAGGCCGCCGCGGCGGGGCTCAGCAGCCTCGAGCTCCTCGTCTCGGCGCTCTCCCCGCGCGCCGACT
GCGCGCCGCCGCCGCTCGGGGAGATCGCCGACCAAGCGTTATCGGGGTTCCGCCGGGTCGTCGACGTCCTCGGCCGCACC
GGTCACGCCCGCTTCCGCCGCGGCCCTGCTGGAGCTGCCGCCGCCTCGTTGACTCCCCCTCCTG---CCTCTTCTTCACC
TCCTATGCCGGCCCGGCCACCGGCGCCGGCAGC------CTCGCAGCACCTGGCAACCCAGAAAAGCCTGACGCTGGACT
TCACCAAGCCTTCGAAGGCGCCGGCAGCGGCA------GCCGCTGCTTCGGTGACGTCGACGTCTTTCTTCTCGTCGGTG
ACGGCGGGGGGCGAGGGCACCGTGTCCAAGGGCCCGAGCCAGCTGGTGTCCTCCGGAAAGCCGCCGCTCGCGGCTGGTAC
CAAACGCAAGCAACAGCAGCAGCAGACGCCCTGCGCGAGCGGCGCGCACTC------CGACGTCGCCGCCGCCAGTGGCC
GGTGCCACTGCTCCAAGAAGCGCAAGCACCGGGTGAAGTACACGACGCGCGTGCCCGCGGTGAGCTCGCGCACGGCGGAC
ATCCC------CGGCGACGACTACTCGTGGCGCAAGTACGGGCAGAAGCCCATCAAGGGGTCCCCTTACCCCCGCTGCTA
CTATAGGTGCAGCACCGCCAAGGGCTGCCCTGCGCGGAAGCACGTGGAACGCGCCACCGACGACCCCGCCATGCTCGTCG
TCACCTACGAGGGCGACCACCGCCATGACACTTCGCCGCCGGCCGCCGCAAATTAAAGTTCCCTGGCAGCGGCAT-CGAC
AGGACTGGA-----------------------------------------------------------------------
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>chr5B_966
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---------------------------------------TTATAAAACCCCTCGGCCTCCGTCCATCCATTTCCACCTCA
AATCTCAAAGTCGC------ACAACGCCACAACCCAAAGCACAAGGCCGCACCCA--------CCTTTCCCCGTTCTTCT
CCGGCGCCGACCATGGCCGTCGACCTCATGGGTTGCGGCTACGCCCCGTATGGCCACGCGGCCGAGGCCGAGGAGCAG--
-------TTCCAGGAGGCCGCTGCCGCGGGGCTCCGCAGCCTCGAGCTCGTCATCTCCTCCTTCTCCTTCGGCGCCGGCT
GCA---CGCCGCCCCTCGGAGAGATGGCCGACCAGGCGGTGTCCAGGTTCCGCCGGGTCATCAACATCCTCGACCGCACC
GGCCACGCCCGCTTCCGCCGCGGCCCTGTTGGAGATGCCGCCGACTCGTTGACTCCCCCTCCTGAATCCTCTGCTCCTCC
TCCGATGCCGGCCCAGGCACCGGCACCGGCACCGGCTGTCTCGCCGCAGCTGGCGCCGCAGAAAAGCATGACGCTGGACT
TCACGAAGCCTTTGAAGGCGCCGGCGGCGGCCTCGGCTGCCGCGCCTTCGGTGACGTCGACTTCTTTCTTCTCGTCCGTG
ACGGCGGGGGGCGAGGGCAGCGTGTCGAAGGGCTGGAGCCAGCTGGTGTCCTCCGGCAAGCCGCCGCTCCCGGCTGGGAC
CAAACGCAAGCAACGCCAACAGCAGACGCGCTGCGCG---------CACTC------CGACGCCGCCGCCGCGGGTGGCC
GGTGCCACTGCTCGAAGAAGCGCAAGAACCGGGCGAAGTACACGACGCGCGTGCCCACAGTAACCTCGGGCGCGGCGGAC
ATCCCCGGCGTCGGCGACAAGTACTCGTGGCGCAAGTACGGGCAGAAGACCATCAAGGGGTCCCCTCACCCCCGCTGCTA
CTATAGGTGCGGCACCGTCAAGGGGTGCCCGGCACGGAAGCACGTGGAGCGCGCCACCGACGACCCCGCCATGCTCGTCG
TCACCTACGAGGGCGACCACTGCCACGACACTTGGCCGCCGGCCGCCGCAAATTAAAGCTCCCTGGC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>chr5D_966
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------TTATAAAACCCCTC--CCTCCGTCCATCCATTTCCACCTCA
AATCTCAAAGTCGC------ACAACGCCACAACCCAAAGCACAAGGCCGCACCCA--------CCTTTCCCCGTTCTTCT
CCGGCGCCGAACATGGCCGTCGACCTCATGGGTTGCGGCTACGCCCCGCATGGCCACGCGGCCGAGGCCGAGGAGCAG--
-------TTCCAGGAGGCCGCTGCCGCGGGGCTCCGCAGCCTCGAGCTCGTCATCTCCTCCTTCTCCTCCCGCGCCGGCT
GCG---CGCCGCCCCTCGGAGAGATGGCCGACCAGGCGGTGTCCAGGTTCCGCCGGGTCATCAACATCCTCGACCGCACC
GGCCACGCCCGCTTCCGCCGCGGCCCTGTTGGAGATGCCGCCGACTCGTTGACTCCCCCTCCTGAATCCTCTGCTCCTCC
TCGGATGCCGGCCCAGGCACT------GGCACCGGCTGTCTCGCCGCAGCTGGCGCCGCAGAAAAGCGTGACGCTGGACT
TCACGAAGCCTTTGAAGGCGCCGGCGGCGGCCCCGGCTGCCGCGCCTTCGGTGACGTCGACGTCTTTCTTCTCGTCCGTG
ACGGCGGGGGGCGATGGCAGCGTGTCGAAGGGCTGGACCCAGCTGGTGTCCTCCGGCAAGCCGCCGCTCCCGGCTGGGAC
CAAACGCAAGCAACGCCAACAGCAGACGCGCTGCGCG---------CACTC------CGACGCCGCCGCCGCCGGTGGCC
GGTGCCACTGCTTGAAAAAGCGCAAGAACCGGGTGAAGTACACGACGCGCGTGCCCACGGTAACCTCGGGCGCGGCGGAC
ATCCCCGGCGTCGGCGACAAGTACTCGTGGCGCAAGTACGGGCAGAAGACCATCAAGGGGTCCCCTCACCCCCGCTGCTA
CTACAGGTGCGGCACCGTCAAGGGCTGCCCGGCGCGGAAGCACGTGGAGCGCGCCACCGACGACCCCGCCATGCTCGTCG
TCACCTACGAGGGCGACCACTGCCACGACACTTGGCCGCCGGCCGCCGCAAATTAAAGCTCCCCGGCAGCGACATGACTC
GATGTGC------TTCTTCCATTCGTTCTTTGTAACG-------------------------------------------
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---------------------------------------
>chr5A_966
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------TTATAAAACCCCTCGGCCTCCGTCCATCCATTTCCACCTCA
AATCTCAAAGTCGC------ACAACGCCACAAGCCAAAGCACAAGGCCGCACCCA--------CCTTTCCCCGTTCTTCT
CCGGCGCCGACCATGGCCGTCGAACTCATGGGTTGCGGCTACGCCCCACACGGCCACGCGGCCGAGGCCGAGGAGCAG--
-------TTCCAGGAGGCCGCTGCCGCGGGGCTCCTCAGCCTCGAGCTCATCATCTCCTCCTTCTCCTCCCGCGCCGGCT
GCG---CGCCGCCCCTCGGAGAGATGGCCGACCAGGCGGTGTCCAGGTTCCGCCGGGTCATCAACATCCTCGACCGCACC
GGCCACGCCCGCTTCCGCCGCGGCCCTGTTGGCGCTGACGCCGACTCGTTGACCCCCCCTCCTGTCTCCTCTGCCCCTCC
TCCGATGCCGGCCCAGGCACCGA------CACCGGCTGTCTCGCCGCAGCTGGCGCCGCAGAAAAGCATGACGCTGGACT
TCACGAAGCCTTTGAAGGCGCCGGCGGCGGCCTCGGTTGCCGCGCCTTCGGTGACGTCGACGTCTTTCTTCTCGTCCGTG
ACGGCGGGGGGCGAGGGCAGCGTGTCGAAGGGCTGGAGCCAGCTGGTGTCCTCCGGCAAGCCGCCGCTCCCGGCTGGGAC
CAAACGCAAGCAACGCCAACAGCAGACGCGCTGCGCG---------CACTC------CGACGCCGCCGCC---GGTGGCC
GGTGCCACTGCTCGAAGAAGCGCAAGAACCGGGTGAAGTACACGACACGCGTGCCCACGGTAACCTCGGGCGCGGCGGAC
ATCCCCGGCGTCGGCGACAAGTACTCGTGGCGCAAGTACGGGCAGAAGACCATCAAGGGGTCCCCTCACCCCCGCTGCTA
CTACAGGTGCGGCACCGTCAAGGGCTGCCCGGCGCGGAAGCACGTGGAGCGCGCCACCGACGACCCCGCCATGCTCGTCG
TCACCTACGAGGGCGACCACTGCCACGACACTTGGCCGCCGGCCGCCGCAAATTGAAGCTCCCCGGCAGCGACATGGCTC
GATGTGC------TTCTTCCATTTGTTCTTTGTAACG-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>SNPs
----------S-------------S------------S-----------------------------------S------
-------------------------S-S-------------------------------------S-----------SS-
--------S----------------------------------S-----------------------S----S-------
-----------------------------S----SS-S-----------------S------------------------
--S-------------------------------------------------------------------S---------
----------S---S----------------------S---------------------------------S--------
---------------------------------------------------------S----------------------
-------S---------------S--------------------------SS--------S------------S------
---------------------S--------------------S------------S-----------S-SSS--------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S----------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------S---------S-------
---------------------------------------------------------------------------S----
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
-----------------------------------------------------------------------------S--
-----------------------------------------S------------S--------S----------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------S---------------------------SSS---S----S--
-----S--------------------------------------------------S-----------S-----------
S-------------------SSS----------S-------------------S------------------S-----S-
-----------------------S------S-S------S--------S--S----------------------------
-------SSSSSSSSSSSSSSSSSSSS----S---S----------S--S-------S---SS------------S----
----------------S-------------S------S-------------------------SSSS-------------
---------S---------------------S---------------------------------S------SSSSSSSS
-----SS--------------------------------S-------------S--------S----------------S
----------------------------------------------------------S-S---S---------------
--------S---------S-----SS-------------S-----------------S--SS------------------
----------------S-------------------------------------S---SS---S-S---S----------
----S---S-------S---------------------------S----S--------S-------------S----S--
-S-------S----S-----S----------------SS
>forward_634
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GATTTGTCAACTCCGGCTGC------
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---------------------------------------
>reverse_2369
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------ACAACCCAAATCTAGGGCGG------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------
