>input_sequence_63544
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---------------------------------------------------ATGATGTCCGCCAACGGCGACTCTCCGGC
CGGCGCCGCCGTGACGACGCCGAGGTCGCGGCTGCCGCGGTGGACGCGGCACGAGACTTTGGTGCTGATCCAGGCGAAGC
GCGTGACGGAGCAGCGCGCGGCGCAGCCGGTGCGGCTCAAGTGGGCGGTGGTGTCGGCCTACTGCCGGCGGCACGGCGTG
GAACGCGGGCCCATGCAGTGCCGCAAGCGCTGGGGCAACCTCTCCTGGGACCTCAAGAAGATCGTCGCCTGGGAGAAGAA
GCACGCCACTGCCGCCGCCGCCGTCGCGGGCGACGCGGACTCGGCGGCGCCGGAGCGCGAGTCGTTCTGGGACATGCGCG
GGGAGGAGCGGCGCGCCAGGCAGCTGCCGTCGTCGTTCGACCGGGAGGTCTACGATGCCATCGTCGGCGCCGGCGGCGCC
GCCAACCAGCTGAAGCCGGACTCTGCCGAGGAGATGGAGCTCGCCGACGACGCGGACGAACACCCGCCGTCGCCGATGAT
GGTCATGCCCATCCAAGGTAAGCGCCGCCAC-----TTCATTCCACGCACATGC-AC------TTGCCACTTGCCACGTA
CTCATATGTGTCGCACGTTTTTTTGCGGCTGCGCAGCGAGAATGTACGTGCCGCCGGCCTCCTCCCGGTCCCAGCACGAG
TGCTCCGATCCGGCGACGGAGAGCGCCAAGAAGCCGGCGTCGGACAAGAACTCGACGTCGCAGCAGGACAGCGAGGCCAC
GTTCGGCGCCGGAGTCGGGGCGGAGGACACGGACACGGCGACGGCGACGCCAACGGCAGCGGCGGGGACCACGAGCATGG
GGAGGCAGATGTCGGAGGCGCTGGAGAGGG-CAACCGTTTGCTGGCGGAGCAGCTGGAGGCGCAGAGGGCGAACTGGGAC
GCGGACAGGGAGCACCGGAGGGCGCTCCTCGCCGCCGTCAACAAGCTCGCCGACGCCGCCGCCAGGATCGCCGAGAGGCT
CTGACGTCTCGACCGGATGA------------------------------------------------------------
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>chr3B_1_TraesCS3B01G475300
GTTCTAATAACTGGTATGTGCTTTGTAGGAGCTCTGCTATGACTACGGCTATGTCCTGAACAGCGTCGTTTCTGCGGATG
GCGAAATTGTCAAGCTGCCATGCTACTGTGGTGCCCCAGACTGCCGCAAGCGACTCTACTAGCGGAGCTCTTCTGTTCTG
GATTTTGGAGAAAGCAGAAGTATATG---TAGTATTGGGAGCATGAACGTGGCCATGCCTGCTGTGTATATGACAAGCAG
GACATCCTATGATTATTAGCAAAAGAAGCGCGTTCTCATTTTGTGTAGGATAGATGACATGCTGGACATGCTAATTATAT
TTAGCAAACGAAGTTTGTCTATGTGGTGACATGATATTTTGTGAACAACTGATCAACTGATATTTTGTGAACAACTGATC
CATATAAGCGATGGAAGGATTAACCGATCTTTAGACATTTTTATGTGTTCCTTGCATCATGCTTCTGAAATCCCTCTTCA
TATTTCAGCATATTACACATAATTCGGTGTGAG--------TGCTGTGTTCTGCTGTCAAAATTATGACAGAAGACGAGA
TA------------------------------------------------------------------------------
--------------------------------------------------------------TAATTTATTGCCATATAA
TTTCTTCTCCTG--------------------------------------------------------------------
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--------------------TCTGTCTCATTGCTCGAGAAATGCCAGCCTGTGCTCTCTGTGGCTGTGGATGCTGATTGA
TGCTGCTGACATAC------TGCTGTCGAACAAATTAATCCTCGTCAAATTCATATATCAGCATTAGTTTATGTCTCCTC
TTGGGTACAGGTAATGTTTGGGGTGGCATATTTGTTGCTTTACAAGTTTAATTTCCTGCTGATTTTGGGCTTTGCTGCCA
GCAGTGGTATGGCAGTAAATGTATGAACTTTT---TGGATAGGTGCAATGAGATATAGATGGCACTAGCTGTGCAGGGTT
AAGTTCTTGCCAATTTCTGTCATGCCGATCTTAATGGCCAAGGAAACAGCAGTGCATAAATCTCAGCCTGGCGAGGCCTC
TCGATCTCGACGCGTGCCCATCCTCTCCT---GATCGAGACCGAGCGAGAAATGATGTCCGCCAACGGCGACTCTCCGGC
CGGCGCCGCCGTGACGACGCCGAGGTCGCGGCTGCCGCGGTGGACGCGGCACGAGACTTTGGTGCTGATCCAGGCGAAGC
GCGTGACGGAGCAGCGCGCGGCGCAGCCGGTGCGGCTCAAGTGGGCGGTGGTGTCGGCCTACTGCCGGCGGCACGGCGTG
GAACGCGGGCCCATGCAGTGCCGCAAGCGCTGGGGCAACCTCTCCTGGGACCTCAAGAAGATCGTCGCCTGGGAGAAGAA
GCACGCCACTGCCGCCGCCGCCGTCGCGGGCGACGCGGACTCGGCGGCGCCGGAGCGCGAGTCGTTCTGGGACATGCGCG
GGGAGGAGCGGCGCGCCAGGCAGCTGCCGTCGTCGTTCGACCGGGAGGTCTACGATGCCATCGTCGGCGCCGGCGGCGCC
GCCAACCAGCTGAAGCCGGACTCTGCCGAGGAGATGGAGCTCGCCGACGACGCGGACGAACACCCGCCGTCGCCGATGAT
GGTCATGCCCATCCAAGGTAAGCGCCGCCAC-----TTCATTCCACGCACATGC-AC------TTGCCACTTGCCACGTA
CTCATATGTGTCGCACGTTTTTTTGCGGCTGCGCAGCGAGAATGTACGTGCCGCCGGCCTCCTCCCGGTCCCAGCACGAG
TGCTCCGATCCGGCGACGGAGAGCGCCAAGAAGCCGGCGTCGGACAAGAACTCGACGTCGCAGCAGGACAGCGAGGCCAC
GTTCGGCGCCGGAGTCGGGGCGGAGGACACGGACACGGCGACGGCGACGCCAACGGCAGCGGCGGGGACCACGAGCATGG
GGAGGCAGATGTCGGAGGCGCTGGAGAGGG-CAACCGTTTGCTGGCGGAGCAGCTGGAGGCGCAGAGGGCGAACTGGGAC
GCGGACAGGGAGCACCGGAGGGCGCTCCTCGCCGCCGTCAACAAGCTCGCCGACGCCGCCGCCAGGATCGCCGAGAGGCT
CTGACGTCTCGACCGGATGAGTTCTCGTCGTCGTCACCGATCGATAGCAGAGATAGGAGATGAAGCCGATTCAGAGTTTC
AGATACTACTAAGTTAGATCAAAATTAAGAATGATACTTTCCGTATGACTATCAAATCTATCATAGATAATGTTGAGTAT
TCTTCTCTAGTTGTTCCTGATGTGAATGGTGAATTGGCCTGATATGATGATGGAATAATGTTTGTTGTCTAGATTAATTC
CTTGCAGGATGTACAACTACGAATCCGTCCAGGTAATCGCTATAGCTGGATCAGTTACTAGTGTTATTTATTTTGGGAGA
AACGTATTGTTAGACAAAGTGAGAAATTGACAAATCAATTTTCTCTATTTGTGTTGAGAGCATACTTTTTTTCGTGACTT
GTGGCGAGAGCATGGAGACCTCCTAATCGTCGCCTTCTGCGTCGTATAGGTGTTCACGCGCCCACGCGCAAGCAAATTTG
CGCTGGCCCACCAGGCGAGCGATCGCTCGCCCAGCACTGGTCAGCTGTTGACTTTTGCGAAAAACACAAAAGAACAAAAA
GAATCACAAACAATTGAAATAAATTTCGTGAATTCAAAATTTTCATGGATTTGAAAAATATTTCACAAATTTAAAAAGAT
CATGAATTCGAAAAAAGTTCATGGATTTTAAAAAATAATAATCATGGATTAGGAAAAAGTTTACGGATTTTGACAGAAAA
ATTTGAGGATTTGAAAAAAATTCATTGATTTTGAAAAAAAATCACGAATTTGGAAAAAGTTTGTGGATTTTAGATAAATC
TTCAATTTATTTATTTTGTCCATTTGAGTGTATTTGAACAAAGTTCATTGGATTCAATTTTTCAGGAATTTGAAAACAGT
TCACATGTTTTCAAAAAAGGTTCACGGATTTGAAGAAATTTCCAATGTTTTTATCAAATCCCACATATAAAAAATAAAAG
AAAAAGAACAAAAAAAGAAAGAAAAGAAAAAACACTAGAAGAAAACACACTGCAATTCGT
>chr3A_1
GTTCTAATAACTGGTATGTGCTTTGCAGGAGCTCTGCTACGACTATGGCTATGTCCTGAACAGCGTCGTTTCTGCGGATG
GCGAAATTGTCAAGCTGCCATGCTGCTGTGGTGCCCCAGACTGCCGCAAGCGACTCTACTAGGGGGGCTCTTCTGTTCTG
GATTTTGGAGAAAGCAGAAGTATATGTAGTAGTATTGGGAGCATGAGCGTGGCCATGCTTGCTGTGTATATGACAAGCAG
GACATCCTATGATTATTAGCGAAAGAAGCGCGTTCTCATTTTGTGTAGGATAGATGACATGCTGGACATGCTAATTATAT
TTAGCAAACAGAGTTTGTCTAGGTGGTGACATGCTGGTCATGATGGCA---------TGATATTTTGTGAACAACTGATC
CATATAAGCAACGGAAGGATTAACCGATCTTTTGACATTTTTATGTGTTCCTTGCATCATGCTTCTGAAATCCCTCTTCA
TATTTCAGCATATTACACATAATTCGGTGTGAG--------TGCTGTGTTCTGCTTTCAAAATTATGACAGAAGATGAGA
TA------------------------------------------------------------------------------
--------------------------------------------------------------TAATTTATTGCCATATAC
TCCCTCCGTTCCTAAATACTCCCTCCGGTTTATGCAATGCGCCCTAAATCTTGTCTATTATGGAAACACACGTAAATTTA
ACTGTGTCTTCTAAACTGTGATGGAGTATAAGTTTTTCTAGAGATTTCACTATGGACTACATACGGATGTGTATACACGT
AGTTTAGAGTGTAGATTCACTCATTTTGCTCTGTACGTATTCCATATTGCAATGTCAAAAAGGACTTATTATTTACGAAT
CGGAGGGAGTAATTTCTACTTCTGTCTCATTGCTCGAGAAATGCCAGCCTGTGCTCTCTGTGGCTGTGGATGCGAATTGA
TAGTGCTGCCATACCCATACTGCTGTCGAACAAATTAGTCCTCGGCAAATTCATATATCAGCATCGATTTGTATCTCCTC
TTGGGTACAGGTAATGTTTGGGGTGGCATATTTGTTGCTTTACAAGTTTAATTTCCTGCTGATTTTGGGCTGTGCTGCCA
GCAGTGGTATGGCAGTAAATCTATTAACTTTT--TTGGATAAGTGCAATGAGATATAGATGGCACTAGCTGTGCAGGGTT
AAGTTCTTGCCAATTTCTGCCCTGCCGATTTTAATGGCCAAGGAAACAGCAGTGCATAAATCTCAGCCCGGCGAGGCCTC
TCGATCTCGACGCGTGCCCATCCTCTCCTGATTCGAGCCTAAGG--AAGAAATGATGTCTGCCAACGGCGACTCTCCGGC
CGGCGCCGCCGTGACGACGCCGAGGTCGCGGCTGCCGCGGTGGACGCGGCACGAGACGCTGGTGCTGATCCAGGCGAAGC
GCGTGACGGAGCAGCGGGCGGCGCAGCCGGTGCGGCTCAAGTGGGCGGTGGTGTCGGCCTACTGCCGGCGGCACGGCGTG
GAGCGCGGGCCCATGCAGTGCCGCAAGCGCTGGGGCAACCTCTCCTGGGACCTCAAGAAGATCGTCGCCTGGGAGAAGAA
GCACGCCGCCGCCGTCGCCGCCGTCGCGGGCGACGCGGACTCGGCGGCGCCGGAGCGCGAGTCGTTCTGGGACATGCGCG
GGGAGGAGCGGCGCGCCAGGCAGCTGCCGTCGTCGTTCGACCGGGAGGTCTACGACGCCATCGTCGGCGCCGGCGGCGCC
GCCAACCAGCTGAAGCCGGACTCCGCCGAGGAGATGGAGCTCGCCGACGACGCCGACGAGCACCCGCCGTCGCCGATGAT
GGTCATGCCCATCCAAGGTAAGGGCCGCCAC-----TACATTCGAACGCGAACTTAC------TTGCCACTTGCCACGTA
CTCATATGTGTCGCACGTTTTTTTGCCGCTGCGCAGCGAGAATGTACGTGCCGCCGGCCTCCTCCCAGTCCCAGCGCGAG
TGCTCCGATCCGGCGACGGAGAGCGCCAAGAAGCCGGCGTCGGACAAGAACTCGACGTCGCAGCAGGACAGCGAGGCGAC
GTTCGGCGCCGGAGTCGGGGCGGAGGACACGGACACGGCGACGGCGACGCCAACGGCAGGGGCGGGGACGACGAGCATGG
GGAGGCAGATGTCGGAGGCGCTGGAGAGGGGCAACCGTTTGCTGGCGGAGCAGCTGGAGGCGCAGAGGGCGAACTGGGAG
GCGGACAGGGAGCACCGGAGGGCGCTCCTCGCCGCCGTCAACAAGCTCGCCGACGCCGCCGCCAGGATCGCCGAGAGGCT
CTGACGTCTCGACCGGATGAATTCTCGTCGTCGACACCGATCGATAGCAGAGATAGGAGATGAGGCCGATTCAGAGTTTC
AGATACTACTAAGTTAGACCAAAATTAAGAATGATGCTTTCCGTATGACTATCAAATCTATCATAGATAATGTTGAGTAT
TCTTCTCTAGTTGTTCCTGATGTGAATGGTGGATTGGCCTGATATGATGACGGAATAATGTTTGTTGTCTAGATTAATTC
CTTGGAGGATGTACAACTAGGAATCCATCCAGGTAATCGCTCAGGCTGGATCAGTTACTAGTGTTATTTATTTTGGGAGA
AACATATTGTTACATAAAGTGAGAAATGGACAAATCAATTTTCTCTATTTGTGTTGAGAGGATACTTTTT----------
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>chr3D_1
GTTCTAATAACTGTTATGTGCTTTACAGGAGCTCTGCTACGACTACGGCTATGTCCTGAACAGCGTCGTTTCTCCGGATG
GTAAAATTGTCAAGCTGCCATGCTGCTGTGGTGCCCCAGACTGCCGCAAGCGACTCTACTAGCGGAGCTCTTCTGTTCTG
GATTTTGGAGGAAGCAGAAGTATATG---TAGTATTGGGAGCATGAATGCGGCCATGCCTGCTGTGTATATGACAAGCAG
GACATACTATGGTTATTAGCGAAAGAAGCGCGTTCTCATTTTGTGTAGAATAGATGACATGCTGGACATGCTAATTATAT
TTAGCAAACGAAGTTTGTCTAGGTGGTGACATGCTGGTCATTATGGCA---------TGATATTTTGTGAACAACTGATC
CATATAAGTGATGGAAGGATTAACCGGTCTATTGACATTTTTATGTGTTCCTCGCATCATGCTTCTGAAATCCCTCTTCA
TATTTCAGCATATTACACATAATTTGGTGTGAGTGGCTGAGTGCTGTGTTCTGCTGTCAAAATTATGACAGAAGACGAGA
TCTAGGGGCTGTTCGGCAATCCACTGCTCCCTGAAATTCAAGGATCTGCAGAGCACCTGTTCCCCCGGTCCCTACTTTTT
ACCTTCAGCTCCGCCAACCCCGGGAGCAGAGCGTGGAGTCGGAGGGATGCCGAACAGGCCTCTAATTTGTCACCATAATT
TTTCATT--CTG--------------------------------------------------------------------
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--------------------TCTGTCTCATTGCTTGAGAAATGCCAGCCTTTGCTCTCTGTGGCTGTGGATGCCAATTGA
TGCTGCTGCCATAC------TGCTGTCGAACAAATTAATCCTCGCCAAATTCATATATCAGCATTGATTTATATCTCCTC
TTGGGTACAGGTAATGTTTGGGGTGGCATATTTGTTGCTTTACAAGTTTAATTTCCTGCTGATTTTGGCCTTTGCTGCCA
GCAGTGGTATGGCAGTAAATCTATTAACTTTTTTTTGGATAAGTGCAATGAGATATAGATGGCACTAGCTGTGCAGGGTT
AAGTTCTTGCCAATTTCTGCCATGCCGATTTTAATGGCCAAGGAAACAGCAGTGCATAAATCTCAGCCTGGCGAGGCCTC
TCGATCTCGACGCGTGCCCATCCTCTCCTCCTGATCGAGACCGGGCAAGAAATGATGTCTGCCAACGGCGACTCTCCGGC
CGGCGCTGCCGTGACGACGCCGAGGTCGCGGCTGCCGCGGTGGACGCGGCATGAGACTTTGGTGCTGATCCAGGCGAAGC
GCGTCACGGAGCAGCGGGCCGCGCAGCCGGTGCGGCTCAAGTGGGCGGTGGTGTCGGCCTACTGCCGGCGGCACGGCGTG
GAGCGCGGGCCCATGCAGTGCCGCAAGCGCTGGGGCAACCTCTCGTGGGACCTCAAGAAGATCGTCGCCTGGGAGAAGAA
GCACGCCGCCGCCGCCGCCA------CGGGCGACGCGGACTCGGCGGCGCCGGAGCGCGAGTCGTTCTGGGACATGCGCG
GGGAGCAGCGGCGCGCCAGGCAGCTGCCGTCGTCGTTCGACCGGGAGGTCTACGACGCTATCGTCG---------GCGCC
GCCAACCAGCTGAAGCCGGACTCCGCCGAGGAGATGGAGCTCGCCGACGACGCCGACGAGCACCCGCCGTCGCCGATGAT
GGTCATGCCCATCCAAGGTAAGCGCCGCCACACCCATACATTCGGACGCACGTACTCGCTACTTTGCCACTTGCCACGTA
CTCATACGTGTCGCACGTTTTTTTGCGGCTGCGCAGCGAGAATGTACGTGCCGCCGGCCTCCTCCCAGTCCCAGCACGAG
TGCTCCGATCCGGCGACGGAGAGCGCCAAGAAGCCGGCGTCGGACAAGAACTCCACGTCGCAGCAGGACAGCGAGGCCAC
GTTCGGCGCTGGAGTCGGGGCGGAGGACACGGACACGGCGACGGCGACGCCAACGGCAGCGGCGGGGACGACGAGCATGG
GGAGGCAGATGTCGGAGGCGCTGGAGAGGGGCAACCGTTTGCTGGCGGAGCAGCTGGAGGCGCAGAGGGCGAACTGGGAC
GCGGACAGGGAGCACCGGAGGGCGCTCCTCGCCGCCGTCAACAAGCTCGCCGACGCCGCCGCCAGGATCGCCGAGAGGCT
CTGACGTCTCGACCGGATGAATTCTCGTCGTCTCG-CCGATCGATAGCAGAGATAGGAGATGAAGCCGATTCAGAATTTC
AGATACTACTAAGTTAGATCAAAATTAAGAATGATACTTTCCGTATGACTATCAAATCTATCATAGATAATGTTGAGTAT
TCTTCTCTAGTTGTTCCTGATGTGAATTGTGAATTGGCCTGATATGATGATGGAATAATGTTTGTTGTCTAGAT------
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>SNPs
-------------------------S-------------S----------------------------------------
------------------------S-------------------------------------------------------
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--------------------S-----------------------------------------------------------
---------------------S-----------S-SS-SSS-SSSSS-SSSSSSSSS-----------------------
--------------------------------S-----------------------------------------------
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-------------------------------------------------------------------------------S
-------SS-----------------------------------------------------------------------
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-------------------------------------------------------------------------SS-----
--------S-----------------------------------S--------------------SS-----S-------
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--------------------S---S----------------S--------------------------------------
-------------------S---------S--------------------------------------------------
-------------------------------------------S--S------------S--------------------
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----------------S---------------------------------------------------------------
--S-----------------------------------------------------------------------------
-------S-S----------------------------------------------------------------------
-------------------------------------------------------S------------------------
-----------------------S-----------------------------S-----S--------------------
-------------------------------------S-----S-SSSSS-SSS--------------------------
------------------------------------------------------------------S-------------
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---------------------------------------------------------------------S----------
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--------------------S------------S----------------------------------------------
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----S--------------S------S--------------SSS------------------------------------
---S--------S-S------------S--------------------------------S---------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1035
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--------------------------------------------------------TCTGTGGCTGTGGATGCTG-----
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>reverse_2821
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--------------------TCCTAATCGTCGCCTTCTGC----------------------------------------
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