>input_sequence_63543
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------------------ATGTTGTCGTCGCACCCGCACGAGGCGGCCATGCTGCCGTACGTGCCGCGGCCGCCGTCGCT
GCTGGTGGACCGGCGGTACAGCACCGGCGCCGAGGTGGCGCCCAACTGCCCGCGCTGCGACTCGCCCAACACCAAGTTCT
GCTACTACAACAACTACAGCCTCAGCCAGCCGCGCTACTTCTGCAAGGGCTGCCGCCGGTACTGGACCAAGGGCGGCTCT
CTCCGGAACGTGCCCGTCGGTGGCGGATGCCGCAAGAACCGCCGGGGGAAGTCGTCCGTGCGGTCGACGTCCGACTCTTT
CTCCGGCGTCCGCGACGCGGCGTTCGGGCATGGAGGGTTCCCCGGCCCGCTCCGGCCGGACATGGTCCTGGAAGGCATGG
TCGGCAACCCGGCGAACCCTGGCCAGGCGATGCACGACGTGCCCACCGCGCCCGACGGCTCGTCCATCGACCTCGCAATG
CTCTACTCCAAGTTTCTGAACAACCAGCAACCGGCTGGCGACGGTAGCCTTGTCGGATCCGTCACGCCGGAGTCGGCCGG
TGGGCACGTCGACGAGACGTTCGACACGTTCAGCGCCTCTAGCGACATGAGCCCCGGTGGCGTTCTGGCGCCCGCGCAGT
TCGACGCGAGCCCGGATGGGTTCCTCGAATGGTCCCGACCGGTGAGCAGCGCCGACCTAAATTGTACGGCCAGCCCAGCT
ACCGCAACCACCATGCTGTGCACCGACGAGAGCGTGCAAGCTGCGCTCGGCGAGCTCAACTTCGCCATGGACCAGAGCTG
TTTCGACTCGTTGGGGTTGCCCACGGATGGTGCCGCCGCTAACCTCTCGTCGTGGTGCTCGATCGTGCCGAGCTTGTCGA
CATGGGAGGAGCCCAAGTACGACTCCCTTGATTCGTTCCCTGACGACACCCTCAGCCTCCATGACGGAATCCTTGCCGCC
GATCATGACTGGAGCGCCGATTGCCAAGGATTGGAAGCTCTCTACATGCCGTAA--------------------------
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--
>chr3B_1_TraesCS3B01G409600
AAGACTACCGGCCGGATGATCGGTCGAGG--CACACGTCCCCAGCATA----CTAG--CTAGCCATAGCCAGCCCACCGG
ATCGCACATCATCG---TCTCCCGCTGGCGCCGGCGCGTGCATGTTGCGTCCCGAGAGCTTAACCGTGTGAGCAAATCCC
GCCCT-CCCCACAGCGTACCCGTCGAAGGGCGGCCATGCATCAGACGCATCGAGCGGAGCGACAGCCAATAACAAAGTCG
TATGGGCGATCCCGAGGGATTTGCGTCCCTCGCACCCCACCGCTCTCCGGGGGGACCCAGA--GTTTCACGTGGCCGGCC
AGTGGTGCGCCGCCACGTACCCCAGCGAGGTTGCCGCCGGCACGGCCTACCCCGGCGGCCTACGGAGCGGCCGCTCCCAC
CATGCCCGTGCGCG---------CGCTGGCAGGCC-CCGTCGATCAGTCTGATACGGCTAC---------------CCCA
CACCGACCACGCCGTAGTAACCACTAGTAATCACTAGACTAAAACAAGAAATTCACGGTGAGGAGTACAACAATTTTACA
TGAAACAGTGAAAGCCTGCAG---------CGTCCTTGGATCA---GTTGAACAGTGGTTGATGCGTCCATCATTGTGC-
-TAACAAGACTAGTACTGTAGCCACTAAAGGGCACCTGCTGCTGCACCACTGCACTGCCATAGTTTGTTG-GGGTGATTA
ACTAGGAGCTGCCTAATTCCTTTAACCCTAAATCAAAGCTCGGAGAATTTCCACTATACTACACTGCATCTCGGCCCAAA
TCTAAGCAACGCAAACTCACATGCACATGCAGGCCGCGTAATTAGCTCCCACCCCGCCGATCCATATAAGAACCCCGCCA
CTCCCTCCACTGCCCTCTCGCCGGCCCCCTCCCCCCACCTCCATCGATCAAGTCACCATCTATTCTCCGGTCACCGCGTT
CTCCGATAAGGTCAATCCCTCTCACATCGCCCACATAGCTCCCTGGCCGCCGGCCGTAGTCT----GATCGCTTCAGAAG
AAGGATCTGTGAACGAGGATGTTGTCGTCGCACCCGCACGAGGCGGCCATGCTGCCGTACGTGCCGCGGCCGCCGTCGCT
GCTGGTGGACCGGCGGTACAGCACCGGCGCCGAGGTGGCGCCCAACTGCCCGCGCTGCGACTCGCCCAACACCAAGTTCT
GCTACTACAACAACTACAGCCTCAGCCAGCCGCGCTACTTCTGCAAGGGCTGCCGCCGGTACTGGACCAAGGGCGGCTCT
CTCCGGAACGTGCCCGTCGGTGGCGGATGCCGCAAGAACCGCCGGGGGAAGTCGTCCGTGCGGTCGACGTCCGACTCTTT
CTCCGGCGTCCGCGACGCGGCGTTCGGGCATGGAGGGTTCCCCGGCCCGCTCCGGCCGGACATGGTCCTGGAAGGCATGG
TCGGCAACCCGGCGAACCCTGGCCAGGCGATGCACGACGTGCCCACCGCGCCCGACGGCTCGTCCATCGACCTCGCAATG
CTCTACTCCAAGTTTCTGAACAACCAGCAACCGGCTGGCGACGGTAGCCTTGTCGGATCCGTCACGCCGGAGTCGGCCGG
TGGGCACGTCGACGAGACGTTCGACACGTTCAGCGCCTCTAGCGACATGAGCCCCGGTGGCGTTCTGGCGCCCGCGCAGT
TCGACGCGAGCCCGGATGGGTTCCTCGAATGGTCCCGACCGGTGAGCAGCGCCGACCTAAATTGTACGGCCAGCCCAGCT
ACCGCAACCACCATGCTGTGCACCGACGAGAGCGTGCAAGCTGCGCTCGGCGAGCTCAACTTCGCCATGGACCAGAGCTG
TTTCGACTCGTTGGGGTTGCCCACGGATGGTGCCGCCGCTAACCTCTCGTCGTGGTGCTCGATCGTGCCGAGCTTGTCGA
CATGGGAGGAGCCCAAGTACGACTCCCTTGATTCGTTCCCTGACGACACCCTCAGCCTCCATGACGGAATCCTTGCCGCC
GATCATGACTGGAGCGCCGATTGCCAAGGATTGGAAGCTCTCTACATGCCGTAATTAAATATA--CAGTTGCAATTCTCT
TTTTTTTTTTGGCCAATTTGTTGTTATTTTTTGTCAGTTTGTCCCTTTTTTCTTTCTTTCAATTTGGTTTGGAGGAATTA
T-------ATATAGATAGATATAATGTATGTTCTGAAGGGAGGAGGGGTGAGGCGGTAATTAAGTACTCATATGTGAAGA
AATTAAGGGTCGGTATACTTGTGAGATAGATGTAATCAGGCAACACAATAAAGTTTGAAAATATTTGATTATATCGATCG
TGTAAAATTGACATATTCTCATCAGTAGTTTGTGCAAGCTCCCCTATAGAACATTGTATTGAAGCTGCCTAT---CCAAA
TCTAGGAGTAGCACACTGAT------------------------------------------------------------
-------------------------------------------------------ACTCCGGTGAGACATTGCTTGCAAG
ATTTGATTCTACTGCTGTAACCCCATCTTACCGCAAATTATTCTATATAGAAGCAATGACCATGCAAGCTCTCGAACTAA
TTAGAGTACATGGCGTATTATCTAGCTTGCATCGTCGGCA--------TTGTGAACAGACTTGGTTAATAAGTGGGAGTG
CCTATGTGGCTTAATTTGTGGAGCAAATGATATCTTGCATGACAA----GTATTCAACAGTGCATGTGTCCCTTGTCTCC
CTCGTGCTCGGTGGAAACGGTTAGTCAAACGAAAGCTAGCGGTCCAATTAAATTCAGAGTGGGGGGAGTGGC---AGCCA
TTCAGCCATTGCCTCAATTATGAGCTAGGAGAATGATCGTCTCGGTAGAATCGA----CCCACTTGTGTGGATCACTTCA
TATCTTTTCTACTCCCTTGATTTTGGGCGAAATGTTTTGTGCACCACAT--TGTTAAATCAAAGAGGAGCAATTTTAATA
TGATCCCTCTTATTACCTCGTCTTTTCACATGGGAGGTAAGAAGGTAAAAGTTCCTCAGACCCACTGTTTGATGAAATTA
ACGTCTCAGATATATTATCTACTCTTGCCTCTCACGTGAAAAGATGAGAGAAGAGGGACCATGTCAAAATTTGCCATCAA
AG
>chr3A_8
-------CCGGCCGGATGATCGATCGAGG--CACACGTCCCCAGCATAGTAGCTAG--CTAGCCATAGCCAGCCCACCGA
ATCGCACATCATCG---TCTCCCGCTGGCGCCGGCGCGTGCATGTTGCGTCCCGAGAGCTTAACCGTGTGAGCAAATCCC
GCCCT-CCCCACAGCGTACCCGTCGAAGGGCGGCCATGCATCCGACGCATCGAGCGGGGCGACAGCCAGTAACAAAGTCG
TATGGGCGATCCCGAGGGATTTGCGTCCCTCGCACCCCACCGCTCTCCGGGGGGGACCCTGGGGTTTCACGTGGCCGGCC
AGTGGAGCGCCGCCACGTATCCCACCGAGGTTGCCGCCGGCACGGCCTACCCCGGCAGCCTACGGAGCGGCCGCTCCCAC
CACGCCCGTGCGCG---------CGCTGGCAGGCCTCCGTCGATCGATCCCTAGCTTCATACGGCTCTCCCAGACTCCCA
CACCGACCACGCCGTAGTAACCACGAGC---CACTAGACTGAAACAAGAAATTCACGGTCTGGAGTACAACATTTTTACA
TGAAACAGTGAAAGCCTGCAGCAGCAGCAGCGTCCTTTGATCGATCGTTGAACAGTGGTTGATGCGTCCATCATCGTGCG
ATAACAAGGCCTGTACTGTAGCCACTAAAGGGCACCTGCTGCTGCACCACTGCACTGCCACAGTTTGTTGGGGGTGGTTA
ACTAGGAGCTGCCTATTTCCTTTAACCCTAAATCAAAGCTCGGAGAATTTCCACTATACCACACTGCATCTCGGCCCAAA
TCTAAGCAACGCAAACTCACATGCACATGCACACCGCGTAATTAGCTCCCACCCCGCCGATCCATATAAGAACCCCGCCA
CTCCCTCCACTGCCCTCTCGCCGGCCTCCTCCC-CCACCCCCACCGATCAAGTCACCATCTCTTCTCCGGCCACCGTGTC
CTCCGATCAGGTCAATCCCTCTCACATCGCCCGCATAGCTCCCCGGCT---GGCCGTAGTCTGATCGATCGCTGCAGAAG
AAGGATCTGTGAACGAGGATGTTGTCGTCGCACCCGCACGAGGCGGCCATGCTGCCGTACGTGCCGCGGCCGCCGTCGCT
GCTGGTGGACCGCCGCTACAGCACCGGCGCCGAGGTGGCGCCCAACTGCCCGCGCTGCGACTCGCCCAACACCAAGTTCT
GCTACTACAACAACTACAGCCTCAGCCAGCCGCGCTACTTCTGCAAGGGCTGCCGCCGGTACTGGACCAAGGGTGGGTCT
CTCCGGAACGTGCCCGTCGGCGGCGGATGCCGGAAGAACCGCCGGGGGAAGTCGTCCGTGAGGTCGGCGTCCGACTCTTT
CTCCGGCGTCCGCGACGCCACGTTCGGCCATGGAGGGTTCCCCGGCCCGCTCCGGCCGGACATGGTCCTGGAAGGCATGG
TCGGCAACCCGGCGAACCCTGGCCAGGTGATGCACGACGTGCCCACCGCGCCCGACGGCTCGTCCATCGACCTCGCAATG
CTCTACTCCAAGTTTCTGAACAACCAGCAACCGGCCGGCGACGGTAGCCTTGTCGGCTCCGTCACGCCGGAGTCGGCCGG
TGGGCACGTCGACGAGACGTTCGACACGTTCAGCGCCTCCAGCGACATGAGCCCCGCCGGCGTTCTGGCGCCCGCGCAGT
TCGACGCGAGCCCGGACGGGTTCCTCGAATGGTCCCGACCGGTGAGCAGCGCCGACCCAACTTGTACGGCCAGCCCAGCT
ACCGCAACCACCATGCTGTGCACCGACGAGAGCGTGCAAGCTGCGCTCGGCGAGCTCAACTTCGCCATGGATCAGAGCTG
TTTCGACTCGTTGGGGTTGCCCACGGACGGTGCCGCCGCTAACCTCTCGTCGTGGTGCTCGATCGTTCCGAGCTTGTCGA
CATGGGAGGAGCCCAAGTACGACTCGCTTGATTCGTTCCCTGACGACACCCTCAGCCTCCATGACGGAATCCTTGCTGCC
GATCATGACTGGAGCGCGGATTGCCAAGGATTGGAAGCTCTCTACATGCCGTAATTATATATA--CAGTTACAATGA---
--TTTTTTTTGGCTAATTTGCTGTTATTTTTTGTCAGTTTGTCCCTTTTTACTTTCTTTCAATTTGGTTTGGAAGAATTA
TTATATATACATACATAGATATAATGTATGTTCTGAAGAGAGGAG---TGAGGCGGTAATGAAGTACTCATATGTGAAGA
AATTAAGGGTCGGTATACTTGTGAGATAGATGTTGAAAATATTG------------GAAAATATTTGATTATATCGATCG
TGTAATATTGACATATTCTCATCAGTATTTTGTGCAAGCTCCCCTATAGAACATTATATTGAAGCTGCCCAT---CCAAA
TCTAGGAGTA----------------------------------------------------------------------
----------------------------TATATCTACAATTCTACATATAACCGCACGCCGGTGAGATATTGCTTGCAAG
ACTTGATTCTACTGCTGTAATCCCATCTTACCGCAAATTATTCGGTGTAGAAGGAATGACCATGCAAGCTCTGGAACTAA
TTAGAGGACATGGCGTATTATCTAGCTTGCATCGTCGGCAAATTCACATTGTGAACAGACTTGTTTAATCAGAGGGAGTA
CCTGTGTGGCTTAATTTGTGGAGCAAATGATGTCTTGCATGACAAGTACGTATTCAACAGTGCATGTGTCCCTTGTCTCC
CTCATGCTCGGTGGAAATGGTTAGTCAAACGGAAGCTAGCGGTCCAATTAAATTCGGGCTAGGTGGAGTGGCTGCTGCCA
TTCAGCCATTGCCTGAATTATGAGCTAGGAGATTGATCGTCTCGGTAGAATCGAGAGACCCACTTGTGTGGATCACTTCA
TATCTTTTCTACTCCCTTGATTTTGGGTAAAATCTTGTGT----------------------------------------
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--
>chr3D_8
-------CCGGCCGGATGATCGATCGAGGGGCACACGTCCCCAGCATACTACTAGCTACTAGCCATGGCCAGCCCACCGA
ATCGCAGATCATCGATCTCTCGCGCGGGCGCCGGCGCGTGCATGTTGCGTCCCGAGAGCTTAACCGTGTGAGCAAATCCC
GCCCTCCCCCACAGCGTACCCGTCGAAGGGCGGCCATGCATCAGGCGCATCGAGCGGAGCGACAGCCAATAACAAAGTCG
TATGGGCGATCCCGAGGGATTTGCGTCCCTCGCACCCCACCGCTCTCCGGGGGGGACCCCGGGGTTTCACGTGGCCGGCC
AGTGGTGCGCCGCCACGTATCCCAGCGAGGTTGCCGCCGGCACGGCCTACCCCGGCAGCCTACGGAGCGGCCGCTCCCAC
CACGCCCGTGCGCGCGCTCTCGCCGCTGGCAGGCCTCCGTCGATCGATCCCTAGCTTCATACGGCTCTCCCAGACTCCCA
CATCGACCACGCCGTAGTA----------------AGACTGAAACAAGAAATTCACGGTGAGGAGTACAACAATTTTACA
TGAAACAGTGAAAGCCGGCAG---------CGTCCTTGGATCA---GTTGAACAGTGGTTGATGCGTCCATCATTGTGC-
-TAACAAGATCAGTACTGTAGCCACTAAAGGGCACCTGCTGCTGCACCACTGCACTGCCACAGTTTGTTGGGGGTGGTTA
ACTAGGAGCTGCCTAATTCCTTTAACCCTAAATCAAAGCTCGGAGAATTTCCACCATACTACACTGCATCTCGGCCCAAA
TCTAAGCAACGCAAACTCACATGCACATGCACACCGCGTAATTAGCTCGCACCCCGCCGATCCATATAAGAAGCCCGCCA
CTCCCTCCACTGCCCTCTCGCCGGCCTCCTCCCCCCACCCCCACCGATCAAGTCACCATCTCTTCTCCGGTCACCGTGTC
CTCCGATCAGGTCAATCCCTCTCACCTCGCCCACATAGCTCCCCGGCC---GGCCGTGGTCT----GATCGCTGCAGAAG
AAGGATCTGTGAACGAGGATGTTGTCCTCGCACCCGCACGAGGCGGCCATGCTGCCGTACGTGCCGCGGCCGCCGTCGCT
GCTGGTGGACCGGCGCTACAGCACCGGCGCCGAGGTGGCGCCCAACTGCCCGCGCTGCGACTCGCCCAACACCAAGTTCT
GCTACTACAACAACTACAGCCTCAGCCAGCCGCGCTACTTCTGCAAGGGCTGCCGCCGGTACTGGACCAAGGGCGGCTCT
CTCCGGAACGTGCCCGTCGGCGGCGGATGCCGGAAGAACCGCCGGGGGAAGTCGTCCGTGCGGTCGGCCTCCGACTCTTT
CTCCGGCGTCCGCGACGCCACGTTCGGGCATGGAGGGTTCCCCGGCCCGCTCCGGCCGGACATGGTCCTGGAAGGCATGG
TCGGCAACCCGGCGAACCCTGGCCAGGGGATGCACGACGTGCCCACCGCACCCGACGGCTCGTCCATCGACCTCGCAATG
CTCTACTCCAAGTTTCTGAACAACCAGCAACCGGCTGGCGACGGCAACCTTGTCGGCTCCGTCACGCCGGAGTCGGCCGG
TGGGCACGTCGACGAGACGTTCGACACGTTCAGCGCCTCCAGCGACATGAGTCCCAGCGGCCTTCTGCCGCCCGCGCAGT
TCGACGCGAGCCCGGACGGATTCGTCGACTGGTCCCGACCGGTGAGCAGCGCCGACCCGACTAGTACGGCCAGCCCAGCT
ACCGCAACCACCATGCTGTGCACCGACGAGAGCGTGCAAGCTGCGCTCGGCGAGCTCAACTTCGCCATGGATCAGAGCTG
TTTCGACTCGTTGGGGCTGCCCACGGACGGTGCCGCCGCTAACCTCTCGTCGTGGTGCTCGATCGTGCCGAGCTTGTCGA
CATGGGAGGAGCCCAAGTACGACTCGCTTGATTCGTTCCCTGACGACACCCTCAGCCTCCATGACGGAATCCTTGCTGCC
GATCATGACTGGAGCGCGGATTGCCAAGGATTGGAAGCTCTCTACATGCCGTAATTAAATATATACAGTTACAATTA---
--TTATTTTTGGCTAATTTGTTGTTATTTTTTGTCAGTTTGT-CCTTTTTTCTTTCTTTCAATTTGGTTTGGAGGAAC--
-----TATATATACATAGATATAATGTATGTTCTGAAGAGAGGAGGGGTGAGGCGGTAATTAAGTACTCATATGTGAAGA
AATTAAGGGTCGGTATACTTGTGAGATAGATGTAATCAGGCAACACAATAAAGTTTGAAAATATTTGATTATATCGATCG
TGTAATATTGACATATTCTCATCAGTATTTTGTGCAACCTCCCCTATAGAACATTGTATTGAAGCTGCCTATGATCCAAA
TCTAGGAGTAGTACATTATTTGGTACTCCCTCCGTAAAGAAATATAAGAATGTTTAGATCACTAAAATAATGATCTAAAC
GCTTTTATAATTCTTTAAAGAGGGTGTATATATCTACAATTCAACATATAACCGCACTCCGGTGAGACATTGCTTGCAAC
ACTTTATTCTACTGCTGTAATC------TACGGCAAATTATTCTGTATAGAAGCAATGACCATGCAAGCTCTCGAACTAG
TTAGAGTACTTGGTGTATTACCTAGCTTGCATCGTCGGCAAATTCACATTGTGAAAAGACTTGGTTAATAAGAGGGGGTA
CCTATGTGGCTTAATTTGTGGAGCAAATGATATCTTGCATGACAAGTA----TTCAACAGTGCATGTGTCCCTTGTCTCC
CTCGTGCTCGGTGGAAACGGTTAGTCAAACGAAAGCTAGCGGTCCAATTAAATTCAGAGTATGGGGAGTGGC---TGCCA
TTCAGCCATGGCCTCAATTATGAGCTAGGAGATTGATCGTCTCGGTAGAATCGA----CCCACTTGTGTCGATCACTTCG
TATCTTTTCCACTCCCTTGATTCTGGGTAAAATGTTGTGTGCGCCACATTGTGTTAAATCAAAGAGATAATTTT------
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--
>SNPs
SSSSSSS---------------S--------------------------------------------------------S
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------------------------------------------------------SS--SSS-------------------
-------------------S------------------------------------S-----------------------
--S------------------------------------------SS--SSSSS-SS-SSS-------------------
------------------------S--SSSS---------S---------------------------------------
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----------S-------------------------------------------------S---------------S---
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-------------------------------SS-----------------------------------------------
--------------------------S------------S---S-----------------S--------------S--S
-------S-----------------------------------S----SSS----------------------S------
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---------------S----------------------------------------------------------------
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--------------------S-----------S---------------------------------S-------------
------------------SS------------------------------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------S-----------------------
---------------------------------------S-----------------S----------------------
----------------S----------------------------------------S--S-------------------
-----------------------------------------------------------------------S--------
---------------------------S----------------------------------------------------
-------------------------S--------------------------------------------------S---
-----------------S----------------------------------------------------S-----SSSS
SS-----------S------------------------------------------------------------------
-------------S------------------------S-----------------------------------------
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-----S---------------------S----------------------------------------------------
-----------S---S-SS-------------------------------------------------------------
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-S------------------S-----------------------S-----------------------------------
------------------------------------------------------------------------S------S
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------------------------------------------------------------S--------------S----
--------------------------------S-----------------------------------------------
---------------------------SS-------S-----S-----------------------SSSSSS--SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_957
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---------------------------------------------------------ATCTATTCTCCGGTCACCGC---
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>reverse_1832
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-----------------------------------------------------------------------CCAGAGCTG
TTTCGACTCGT---------------------------------------------------------------------
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--
>forward_968
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---------------------------------------------------------------------GTCACCGCGTT
CTCCGATA------------------------------------------------------------------------
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--
>reverse_2876
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---------------------------------------------------------------------------AGCCA
TTCAGCCATTGCCT------------------------------------------------------------------
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--
