>input_sequence_63530
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-ATGGCGCAGCCGCGGAACGCGGCCGCGGTGGTGCGGCTGCCGGCGATGAACGCGCTGGAGATCCTGCGGGAGACGGTGC
GCGTGCTGCGCGCCGACCCGCACGCCTTCACCTACGTGCTCTTCCTCCTGCTCTGCCCGGCCTCCGGCTTCCTCCTCCTG
TCCGCCGCCGCGCTCGAGGGCGCCGTCGTGCTGCCGCTCGCGCGCCGCCTCCTGGTCGCCGCGGCGTCCTCGGGGGTCCC
CGTCACGCATTTCGTCAAGCAGCTCGCGCACCACCTCGCCGCCACGCTCGTCGCCGCCGTCGTCTCCTTCCCGGCGCTCC
TCACGCTGCTCCTCGCTGCCCGCGCCGCCGTCGCCTACACCGTGGCGGCCGTGTACGCGGGCAAGCCCCTCCCCGCCGCC
GACCTCTCCCTCCTGGCGCGCCGCGCGTGGCCGCGCCTCGCCGCCACCTACGGCCTCTCGTGCGCCGCCGTCGCCGCCTG
CCTCGCCACCTTCCTCGCCCTCCTCGTCACCGTCTGCTCCACACTGAAGTCCATGCTCTACCCGCCGGACATTGTCGTCT
GCGCCGGCCTCCTCACGGTCCTTGCGTTCTCCATCGTGTACGCGCACACCATCATAGTGTGCAGCCTCGGCGGAGTCATT
GCCGTTCTTGAGGACGTGGCCGGGGTCAATGCGCTGCGTCGGTCGGTGCAGCTGATGCGCGGCCAAACCCATGTCGGGCT
GCTCATCTTTCTTGTATCCACCATTGGTCTGGCCTTCGTCGAGGGGCTGTTTGAGCACAGGGTGAAGACCTTGAGTTATG
GGGATGGTTCATCTCGGCTCTGGGAGGGGCCATTGCTAATCCTCATGTACTCTTTCGTGATGCTGATAGATTCGATGATG
AGTGCAGTGTTCTACTTCACTTGCCGATCATCGAGCTTGGCAATTCTGGATGAGGAGGGCGGCTCAGTTGAGGAGATTGA
GATGATGATGGATGACAAGTCAGATGCAGTCAGGTGA-------------------------------------------
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>chr2B_1_TraesCS2B01G209900
CATCGTTGTTCATGAGTGTCTGCCCAAAATGGAGGAGACCCAGATGATTTCTCCATGGCCTCGCCACTGACCCGCACGAG
AAAACTGCACAGCACGGAAACCAAGGGACGAAACCAACCATA-CACGAGGGTGCCACGAAGCTTCACCGAGCTCCAGCCT
CCACCCGCCCCCACATGCCATACG-GATACCGCAAGCCCGGAAACGAACTCCCCTGGTGGGTCCCGCGTGTCATACAAAC
CAGTAAACTGTCGGTAGTCTGTGTCAGGCTCAGTGGCTCGCCCTCCCCTCGCGTCGTCGCCCCCCTTCAACAAAAGCCCT
ACCCTCGATCTCTGCTCTAGAGAAGCTTCTCCCTCCACTCCACCCCCACCCCCACCCCCACCCCCACCCCCACCCCATTG
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---------------------------------------CCACCCCCCGGGATCCCACCTCGCGCCGCCCACCACTTAGC
CGCATTCCGCGCCGCGGCAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCGGATCTGACCCGGCCAGGTCGCGGGCCCGGAGAGAGCGGCGG
GATGGCGCAGCCGCGGAACGCGGCCGCGGTGGTGCGGCTGCCGGCGATGAACGCGCTGGAGATCCTGCGGGAGACGGTGC
GCGTGCTGCGCGCCGACCCGCACGCCTTCACCTACGTGCTCTTCCTCCTGCTCTGCCCGGCCTCCGGCTTCCTCCTCCTG
TCCGCCGCCGCGCTCGAGGGCGCCGTCGTGCTGCCGCTCGCGCGCCGCCTCCTGGTCGCCGCGGCGTCCTCGGGGGTCCC
CGTCACGCATTTCGTCAAGCAGCTCGCGCACCACCTCGCCGCCACGCTCGTCGCCGCCGTCGTCTCCTTCCCGGCGCTCC
TCACGCTGCTCCTCGCTGCCCGCGCCGCCGTCGCCTACACCGTGGCGGCCGTGTACGCGGGCAAGCCCCTCCCCGCCGCC
GACCTCTCCCTCCTGGCGCGCCGCGCGTGGCCGCGCCTCGCCGCCACCTACGGCCTCTCGTGCGCCGCCGTCGCCGCCTG
CCTCGCCACCTTCCTCGCCCTCCTCGTCACCGTCTGCTCCACACTGAAGTCCATGCTCTACCCGCCGGACATTGTCGTCT
GCGCCGGCCTCCTCACGGTCCTTGCGTTCTCCATCGTGTACGCGCACACCATCATAGTGTGCAGCCTCGGCGGAGTCATT
GCCGTTCTTGAGGACGTGGCCGGGGTCAATGCGCTGCGTCGGTCGGTGCAGCTGATGCGCGGCCAAACCCATGTCGGGCT
GCTCATCTTTCTTGTATCCACCATTGGTCTGGCCTTCGTCGAGGGGCTGTTTGAGCACAGGGTGAAGACCTTGAGTTATG
GGGATGGTTCATCTCGGCTCTGGGAGGGGCCATTGCTAATCCTCATGTACTCTTTCGTGATGCTGATAGATTCGATGATG
AGTGCAGTGTTCTACTTCACTTGCCGATCATCGAGCTTGGCAATTCTGGATGAGGAGGGCGGCTCAGTTGAGGAGATTGA
GATGATGATGGATGACAAGTCAGATGCAGTCAGGTGATTAAGAAGATTATAGGTCTTTTTCTCAAGGTGTATCTGTTCAT
ATTCTGGTGGGAAATAAGTGAGGTGGGCAATGCCCGTTTTTTGCCAAGATCGAAGGGTGTGGTCGTGTCACCATGATTAC
ACGCTTAATGTG-CACGATCGGTTCATGTTCATGGAGAAAGAAACCTTTTGCAGTCATTTGGGGTTCTTCGAGGCTCATG
TAATGGCGCGGATGCAAAAGAGAAGACCAGGGAAAACTTAGATTTGGTGTATTCTTGATCTGTCTCAGAAGTGATCCGAG
GGCTGGCAATGTGTGTAGCATTCTTTTCAAACGATGTAACTAGTATATCAATTCAATTACGGTGGAATTTTGTCATCTCA
ACACATTTTTGGTTATACGGAATGGAACATATTGTAATACTGAGGTACCGATGACTCTGAAACTTGATTCATGAATCTGC
ACTCGGTCCGAATTTCTTTTACAGTG-ACTTCAACTCTGTCTTCTAAATGATGCTTATTTTGAGTTTGAGACATGGTAAC
CACATAAGACATGAATGTCATGCTTATTTTGTTAACCTATTCTTCCACTGCAGAAGTCTGATGTGCCAACATTACAGATC
ACTGCCATGTAAGCTCCTTTGAGCTTGAGACATGGTTAATTATTCTCCTTGCATCAGAATTGGAGTTCTCCATTTGCTTT
GCTGGACTCTAGAAAACCCAGGTTCAAGAAAAATGTCCATGATGATTCTTGTGTTCTATTTTCATTGTTTAGTAAAAACT
TTGTCAACTCTCAAGCTTAGATTGTGCATATGAAGCATCTTTTATCTTGTTTATTTACTAGCGATGCTTTCTCGAGGCGG
TAGTTGAACTGATAACCGCTGTTTTTATATGACAGATGTACTCATTTTCCAACCTTAGATCAGGAACACGGTATATTGAC
TTCCATTTAGTACTACTGGATTGCATTATTCCCAAGATAAACTTGTGGTAGTATTCGTTGAATCAGGCGATTATATTTA
>chr2A_1
CATCGCTGTTCATGAGTGT-----CAAAAGGGAGGCGACCCAAATGACTTCTCCATGGCCTCCCCACTGACCCACACGAG
AAAACTGCACAGCACGGAAACCCAGGGACGAGACCCCACCCTCCACGAGCGTGCCACGAAGCTTCACCGAGCTCCAGCCT
CCACCCGCCCCCACATGGCATACC-GATACCGCAGGCCCGGAGACGAACCCCCCTGGTGGGTCCCGCGTGTCATACAAAC
CAGTAAACTGTCGGTAGTCTGTGTCAGGCTCAGTGGCTCGCCCTCCCCTCGCGTCGTCGCCCCCCTTCAACAAAAGCCCT
ACCCTCGATCTCTGCTCTAGAGAAGCTTCTCCCTCCACTCC------------------------ACCCCCACCCCATTG
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---------------------------------------CCACCCCCCGGGATCCCACCTCGCGCCGCCCACCACCTAGC
CGCATTCCGCGCCGCGGCAGGGCACCCGCGCATTGCTCGGCGCACGTCGTCGTCCGAAGAGCCTGATCTC----------
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---------------------------------GCCTCGGATCTGACCCGGCCAGGCCGCGGGCCCGGAGGCAGCGGCGG
GATGGCGCAGCCGCGGGGCGGGGCCGCGGCGGTGCGGCTGCCGGCGATGAACGCGCTGGAGATCCTGCGGGAGACGGTGC
GCGTGCTGCGCGCCGACCCGCACGCCTTCACCTACGTGCTCTTCCTCCTGCTCTGCCCGGCCTCCGGCTTCCTCCTCCTG
TCCGCCGCCGCGCTCGAGGGCGCCGTCGTGCTGCCGCTCGCGCGCCGCCTCCTCGTCGCCGCCGCGTCCTCGGGGGTCCC
CGTCACGCATTTCGTCAAGCAGCTCGCGCACCACCTCGCCGCCACGCTCGTCGCGGCCGTCGTCTCCTTCCCGGCGCTCC
TCACGCTCCTCCTCGCTGCCCGGGCCGCCGTCGCCTACACCGTGGCGGCCGTGTACGCCGGCAAGCCCCTCCCGGCCGCG
GACCTCTCCCTCCTCGCGCGCCGCGCGTGGCCGCGCCTCGCAGCCACCTACGGCCTCTCGTGCGCCGCCGTCGCCGCCTG
CCTCGCCGCCTTCCTCGCCCTCCTCGTCACCGTCTGCTCCACGCTCAAGTCCATGCTCTACCCGCCGGACATTGTCGTCT
GCGCCGGCCTCCTCACGGTCCTTGCGTTCTCCATCGTGTACGCGCACACCATCATAGTGTGCAGCCTCGGCGGAGTCATT
GCCGTTCTCGAGGACGTAGCCGGGGTCAATGCGCTGCGCCGGTCGGTGCAGCTGATGCGCGGCCAAACCCATGTCGGTCT
GCTCATCTTTCTTGTGTCCACCATTGGTCTGGCCTTCGTCGAGGGGCTGTTTGAGCACAGGGTGAAGACCTTGAGTTATG
GGGATGGCTCATCTCGGCTCTGGGAGGGGCCATTGCTGATCCTCATGTACTCTTTCGTGATGCTGATAGATTCGATGATG
AGTGCGGTGTTCTACTTCACTTGCCGATCATCGAGCTTGGCAATTCTGGATGAGGAGGGCGGCTCAGTCGAGGAGATTGA
GATGATGATGGATGACAAGTCAGATGCAGTGAGGTGATTAAGAAGATTATAGGTTTCTTTCTCAAGGTGTATCTGTTCAT
ATTCTGGTGGGAAATAAGTGAGGTGGGCAACATCCGGTTTTTGCCAAGATTGAAGGGTGTGGTCGTGTCACCATGATTAC
ACGCTTAATGTGCCACGATCGATTCATGTTCATGGTGATAGAATCCTTTTGCAGTCATTTGGGGTTCTTCGAGGCTCATG
TAATGGCGCGGATGCAAAAGAGAAGACCGGGGAAAACTTAGATTTGGTGTATTCTTGATCTGTCTCAGCGGTGATTCGAG
GGCTGGCAATGTGTGTAGCATTCTTTTGAAACGATGTGACTAGTATATCAATTCAATTGTTGTGGATTTTTGTCACCTCA
ACACATTTTTGGCTATACGGAAGGGAACATATTGTAATAGCAAGGTACTGATGGCTCTGAAACCTGATTCATGAATTTGC
ACTCTATCCAAATTTATTTTACAGTGAACTTCAAGTCTGTCTTCTAAACGATGCTTGT---------------TGTTAAC
CACATAAGATATGGATTTCATTCTTATTTTGTTGGCCTATTCTTCAACTGCAGAAGTCTGATGTGCCAACATTACAGATC
ACTGCCATGTAAGCGCCTTTGAGCTTGAGACATGGTTAATTATTCTCCTTGCATCAGAATTGGAGTTCTCCATTTGCTTT
GCTGGACTCTAGAAAACCCAGGTTCAAGAAAAATGTCCATGATGATTCTTGTGTTCTATTTTCATTGTTTAGTAAAAACT
TTGTCAACTCTCAAGCTTAGATTGTGCATATGAAGCATCTTTTATCTTGTTTATTTACTAACGATGCTTTCTCGAGGCGG
TACTTGAACTGATAACCGCTGTTTTTATATGACAGATGTACTCCTTTTCCAACCTTAGATCATGAACACGGTATATTGAC
TTCCATTTAGTACTGCTGGATTGCATTATTCCCAAGATAAACTTGTGGTAGTATTCGTTGAATCAGGCGATTATATTTA
>chr2D_19
------------------TCTGCCCAAAATGGAGGAGACCCAGATGATTTCTCCATGGCCTCGCCACTGACCCGCACGAG
AAAACTGCACAGCACGGAAACCAAGGGACGAAACCAACCATA-CACGAGC--GCCACGAAGCTTCACT--GCTCCAGCCT
CCACCCGCCCCCACATGCCATACCCGATACCGCAGGCCCGGAAACGAACTCCCCTGGTGGGTCCCGCGTGTCATACAAAC
CAGTAAACTGTCGGTAGTCTGTGTCAGGTTCAGTGGCTCACCCTCCCCTCGCGTCGTCGCCCCCCATCAACAAAAGCCCT
ACCCTCGATCTCTGCTCTAGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCCCCCGGGATCCCACCTCGCGCCGCCCACCACTTAGC
CGCATTCCGCACCGCGGCAGGGCAGCCGCGCATTGCTCGGCGCACGTCGTCGTCCGAAGAACCTGATCTC----------
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---------------------------------GCCTCGGATCTGACCAGGCCAGGTCGCGGGCCCGGAGAGAGCGGCGG
GATGGCGCAGCCGCGGGGCGGGGCCGCGGCGGTGCGGCTGCCGGCGATGAACGCGCTGGAGATCCTGCGGGAGACGGTGC
GCGTGCTGCGCGCCGACCCGCACGCCTTCACCTACGTGCTCTTCCTCCTGCTCTGCCCGGCCTCCGGCTTCCTCCTCCTG
TCCGCCGCCTCGCTCGAGGGCGCCGTCGTGCTGCCGCTCGCGCGCCGCCTCCTCGTCGCCGCGGCGTCCTCGGGGGTCCC
CGTCACGCATTTCGTCAAGCAGCTCGCGCACCACCTCGCCGCCACGCTCGTCGCCGCCGTCGTCTCCTTCCCGGCGCTCC
TCACGCTCCTCCTCGCCGCCCGCGCCGCCGTCGCGTACACCGTGGCGGCCGTGTACGCCGGCAAGCCCCTCCCGGCCGCC
GACCTCTTCCTCCTCGCGCGCCGCGCGTGGCCGCGCCTCGCCGCCACCTACGGCCTCTCGTGCGCCGCCGTCGCCGCCTG
CCTCGCCACCTTCCTCGGCCTCCTCGTCACCGTCTGCTCCACGCTCAAGTCCATGCTCTACCCGCCGGACATTGTCGTCT
GCGCCGGCCTCCTCACGGTCCTTGCCTTCTCCATCGTGTACGCGCACACCATCATAGTGTGCAGCCTCGGCGGAGTCATC
GCCGTTCTTGAGGACGTGGCCGGGGTCAATGCGCTGCGCCGGTCGGTGCAGCTGATGCGCGGCCAAACCCATGTCGGCCT
GCTCATCTTTCTTGTATCCACCATTGGTCTGGCCTTCGTCGAGGGGCTGTTTGAGCACAGGGTGAAGACCTTGAGTTATG
GGGATGGCTCATCTCGGCTCTGGGAGGGGCCATTGCTGATCCTCATGTACTCTTTCGTGATGCTGATAGATTCGATGATG
AGTGCGGTGTTCTACTTCACTTGCCGGTCATCGAGCTTGGCAATTCTGGATGAGGAGGGCGGCTCAGTCGAGGAGATTGA
GATGATGATGGATGACAAGTCAGATGCAGTGAGGTGATTAAGAAGATTACAGGTTTCTTTCTCAAGGTGTATCTGTTCAT
ATTCTGGTGGGAAATAAGTGAAGCGGGCAACATCCAGTTTTTGCCAAGATTGAAGGGTGTGGTCGTATGGCCATGATTAC
ACGCTTAATGTGCCACGATCGATTCATGTTCATGGTGAAAGAATCCTTTTGCAGTCATTTGGGGTTCTCCGAGGCTCATG
TAATGGCGCGGATGCAAAAGAGAA--CCAGGGAAAACTTAGAT-TGGTGTATTCTTCATCTGTCTCAGCAGTGATCCGAG
GGCTGGCAATGTGTGTAGCATTCTTTTGAAACGATGTAACTAGTATATCAATTCAATTGCGGTGGAATTTTGTCATCTCA
ACACATTTTTGGTTATACGGA-----ACATATTGTAATACTAAGGTACCGATGACTCTGAAACTTGATTCATGAATCTGC
ACTTGATCCGAATTTATTTTACAGTG-ACTTCAAGTCTGTCTTCTAAATGATGCTAATTTTGAGTCTGAGACATGGTAAC
CACATAAGACATGAATTTCATGCTTATTTTGTTGACCTATTCTTCCACTGCAGAAGTCTGATGTGCCAACATTACAGATC
ACTGCCATGTAAAAGTTCCTC----TGAGACATGGTTAATTACTCTTCTTGCATCAGAACTGGAGTTCTCCATTTGCTCT
GCTGGACTCTAGAAAACCCAGGTTCAAGAAAAATGTCCATGATGATTCTTGTGTTCTATTTTCATTGTTTAGTAAAAACT
TTGTCAACTCTCAAGCTTAGATTGTGCATATGAAGCATCTTTTATCTTGTTTATTTACTAACGATGCTTTCTCGAGGCGG
TAGTTGAACTGGTAACCGCTGTTTTTATATGACAGATGTACTCCTTTTCCAACCTTAGATCAGGAACACGGTATATTGAC
TTCCATTTAGTACTACTGGATTGCATTATTCCCAAGATAAACTTGTGGTAGTATTCGTTGAATCAGGCGATTATATTTA
>SNPs
-----S--------------------------------------------------------------------------
-------------------------------------------------S------------------------------
-----------------------S----------S---------------------------------------------
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-----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSS---------------
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------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------
----------------SS--S--------S--------------------------------------------------
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-----------------------------------------------------S--------------------------
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-------S--------------------------------------------------S--------------S------
--------------S-----------------------------------------------------------------
------------------------------------------S--S----------------------------------
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--------------------------------------S--------------------------------------S--
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-------S-----------------------------S------------------------------------------
-----S--------------------------------------------------------------S-----------
------------------------------S-----------------------S-S-----------------------
------------------------------SSS---S-------------S-----------------------------
---------------------S-------------S-------S------------------------------------
--------------------------------------------------------------------S-----------
---------------------------S------------------------------S---------------------
----------------------S------------------S--------------------------------------
-----S---------S------------------S------------------------------S--------------
----------------S----------------S----------------------------------------------
--------------S-----------------------------------------------------------------
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------------------------------------------------------------S-------------------
-------------------------------------------S------------------------------------
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>forward_362
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----------------------AAGCTTCTCCCTCCACTCCA--------------------------------------
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>reverse_1886
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---------------------------------------------GAAGTCCATGCTCTACCCGC---------------
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>forward_363
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-----------------------AGCTTCTCCCTCCACTCCAC-------------------------------------
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>reverse_2168
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-------TTCATCTCGGCTCTGGGAGG-----------------------------------------------------
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>forward_365
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--------------------------TTCTCCCTCCACTCCACCC-----------------------------------
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>reverse_2451
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--------------------------------------------------CGAAGGGTGTGGTCGTGTC-----------
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