>input_sequence_63460
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---------ATGGCGTACGATCAGCGGGGGCTGAGAGGCGAGGAGGCAGCGGCGGCGGCGGTGGGGGAGGAGGAGATGCT
CCGGCGCGGGCCGTGGACGGTGGAGGAGGACGTGCTCCTCGCCAACTACATCGCGGCCAACGGCGAGGGCCGGTGGAACG
CGCTGGCGCGGCGCGCGGGGCTGAAGCGCACGGGCAAGAGCTGCCGCCTGCGGTGGCTCAACTACCTGCGGCCGGACCTG
CGGCGCGGCGGCATGACGGCGGAGGAGCAGCTGCTCGTCCTCGAGCTGCACGCGCGGTGGGGCAACCGGTGGTCCAAGAT
CGCGCAGCACCTCCCCGGCCGCACCGACAACGAGATCAAGAACTACTGGCGGACGCGGGTGCAGCGCCACGCCAAGCAGC
TGCGGTGCGACGTCGGCAGCCAGCGGTTCAGGGACCTCGTGCGCGGCCTCTGGATCCCCCGCCTCCTCGAGCGCATCCAC
GCCGCCGCCAACAACTCCGGCGACGGCGACGTGATAGCGCAGGCCACGGCGGCCGCGCTGCCCGTCGCGGCGGACGGGCG
GTGCTGGCCCGTCGACGACGTGTTCGACCTCGGCCCCGGCGCCGC---GGCCGACGTGGAGCTGTCATGCACCACCGCCC
TGTCCTCGTCGTCGTCGGTGTCCACGGACGGCTGCGGCGTGCTGCAGCCCCTGCCCGCGCCGGCGCCCATGGTGGCTACC
GCCGAGAGCGCGCGCGGAAGCGTCATCATCAGCGCTGCCATGCACGACACGGCGCTCTGGCAGCCGCCGCAGACTCACGG
CGGCCTCATGATGACCCAAGAACAACAGCACCACCAACAGGCTGAGTCGCAGCCGCAGCTGCTCGGCGCCGAGACGTGGT
GGTCCGACCAGACCTCGCTCCCCGCCGGGCTGTACGCCGACGTGGGCTTCCCGGAGCTGGAGTTCGGCGGCGAGACCATG
TGGGGCGCCTGCGCCGATGACCTGTGGTGCACGGACATGCTGGGGCTGTGA-----------------------------
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>chr2B_1_TraesCS2B01G112600
TGACTACTCCCTCCGTTCCCAAATAATTGTCTTTCTAGCCATCTCAAATGGACTACAACATACGGATGTATATAGACATG
TTTTAGAGTGTAGATTCACTCAATTTGCTCCGTATGTAGTCACTTGTTGAAATCTCTAGAAAGACAATTATTTAGGAACG
GAGGGAGTACATATGGAGAAAGATGAATGAATCTACACTCTAAAATATGTCTATATACATTCGTATGTAGTAGTCCATTT
AAAATCTTAAAAAAGATAAATATTTAGGAACTGAGGGAGTACTATTGTAGTATATGCCATTGGTGACAAATTGGTGCAAG
GTATTCAGGGAACGTTGTGATGAGAAACAGTAAAGTATTTCTTCTATGGATACCCGCATAGTTTCGTGATACATTCTTAC
TCCCTCCGTAAAGAAATATAAGAGTGTTGATCGTTTAGATCATTAAAGTAGTGATCTAAACGCTTTTATATTTTATTTAC
AGAGGGATGTACGACACGACTTAGCAGCACGAGTAATTGGCGTAAAATATTTCTTGTACACCGGACA-GGGGTCAAAATC
AAAGCAAAGCAGGACGAGTAAAATTAAGG----TAGCTTTAACTGGCGTGTGCCCGCGGGTTAGCGTCGTTAATCTGGTG
CTGTAATTCCAAAAGACGGGCTAATCACGCCTCAACTTTTGGCTTTTTCGAGTTTGGTTCATCAT------CATGCTTAA
ACTAATCCTCCACGGTTGCGGCGTGCTCCCC----TGCCTTCCATCATCAATCCTCATCATCATCAATCGTCCAGT---C
TAACTCTTTTCAAGTCCAAGCCAAGCCA-----ACCAAGCTACCACGGAATACCTCTCTCCCTCCACTACCTACAGCAAA
GCTAGCCA----------------------CTGATCTCTCTCACTCCTCTCCTCTATATAAGCCCGTCCATGGCGGATGG
CTCTCCCGCCCTTTTCATCGTCTCATCATTTGATCACCCATACAGAGATCCGGA----TAGCTGCTAGCTTCGTTTGTCT
GTTGTGGCGATGGCGTACGATCAGCGGGGGCTGAGAGGCGAGGAGGCAGCGGCGGCGGCGGTGGGGGAGGAGGAGATGCT
CCGGCGCGGGCCGTGGACGGTGGAGGAGGACGTGCTCCTCGCCAACTACATCGCGGCCAACGGCGAGGGCCGGTGGAACG
CGCTGGCGCGGCGCGCGGGGCTGAAGCGCACGGGCAAGAGCTGCCGCCTGCGGTGGCTCAACTACCTGCGGCCGGACCTG
CGGCGCGGCGGCATGACGGCGGAGGAGCAGCTGCTCGTCCTCGAGCTGCACGCGCGGTGGGGCAACCGGTGGTCCAAGAT
CGCGCAGCACCTCCCCGGCCGCACCGACAACGAGATCAAGAACTACTGGCGGACGCGGGTGCAGCGCCACGCCAAGCAGC
TGCGGTGCGACGTCGGCAGCCAGCGGTTCAGGGACCTCGTGCGCGGCCTCTGGATCCCCCGCCTCCTCGAGCGCATCCAC
GCCGCCGCCAACAACTCCGGCGACGGCGACGTGATAGCGCAGGCCACGGCGGCCGCGCTGCCCGTCGCGGCGGACGGGCG
GTGCTGGCCCGTCGACGACGTGTTCGACCTCGGCCCCGGCGCCGC---GGCCGACGTGGAGCTGTCATGCACCACCGCCC
TGTCCTCGTCGTCGTCGGTGTCCACGGACGGCTGCGGCGTGCTGCAGCCCCTGCCCGCGCCGGCGCCCATGGTGGCTACC
GCCGAGAGCGCGCGCGGAAGCGTCATCATCAGCGCTGCCATGCACGACACGGCGCTCTGGCAGCCGCCGCAGACTCACGG
CGGCCTCATGATGACCCAAGAACAACAGCACCACCAACAGGCTGAGTCGCAGCCGCAGCTGCTCGGCGCCGAGACGTGGT
GGTCCGACCAGACCTCGCTCCCCGCCGGGCTGTACGCCGACGTGGGCTTCCCGGAGCTGGAGTTCGGCGGCGAGACCATG
TGGGGCGCCTGCGCCGATGACCTGTGGTGCACGGACATGCTGGGGCTGTGAAACATCAAACTACTCAACTACCGGTGACC
TGGGGTAACTGAGGGGAAGGTTATTATCGGAGCGTTCGCTACTAATCTTGCACTTAGCGCTCCAATAATCCCGTCTCCTC
TTCC--CTCAAAACATGAGTATACTTCA---------CTAGCTAGCTAGTGTGTCTTCTTCAGTATGTGTACTACGTGTA
ATGTCGTTGATGGATCTTTCATTTTTCTTTTCTCTTTTGGACTTTACTCATTCTTTCCTGGGTAAATACGGAGTGATTGG
TTTGTAACCAGCCGTGTGTAACTTTTGATGGCC-----------GCAATAAAACTTGAATCGAACATGCATCCCTGACGA
GGCT------------------------------------GTGCAATCGATTAATCTGTCGAGAGAGATATGTAATGTAA
CCTTC-----------ATGCATGTTACTACAAAGAATTATTCGTCAAGTAGATGAAGAT--TGAGGAGGTGACGAAGCAA
TCACAACAAAAAAAGAG------TTAGAATGAATTGATCACGTGTGCGTAACCGGCCACAGTTTTGTATCACAAGCCATT
TGCTCGATCGATCGCATGCCCGT--CTCCAAACTATAAAAAGTATTCGGTGCCGATTAGGATACGAGTCACCTTCCTCTA
ATCTAATCTAATCTAGAGGAAGATAACTCTAGATATTTTGGCTAGACGTCCGTACGGACCGGCGTCTCCGG--------C
CAATCCAATGATGCAATCAACTGAACATCTTTGTGTTTGTCTTGATGATGGAGAGTGCCACTTAC-AGTACCACCGAGGA
ACATACACACACAGAATTAACCAAGCA------------------TGATCGAATTGGACAGCACTAGCGACGGCGAT--C
AGCACAAACATAGAGACGCCGGGCCACGCG----TATGATTAGCAACA-ACAACGAAAGTGGGGCAAACTGTGTGCGGAA
AGGATGT-----AGCATCCGTCGCTTTAGTTTTATTTTGGCATGTCCAGCACATGATGAAAACGGCCGGAGAAAAGGGCG
GGAAAGCATCGGATTTCCCGTGTTTTCTCACACGTATCGATCGATCCCC
>chr2D_537
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--------------------------------------------------------TACACTGGACA-GGGGTCAAAATC
AATGCAAAGCAGCACGAGTAAAATTAAGCTAGCTAGCTTTAACTGGCGTGTGCCCGCGGGTTAGCGTCGTTAATTTGGCG
CTGTAATTCCAAAAGACGGACTAATCACGCCTCAACTTTTGGCTTTTTCGAGTTTGGTTCATCAT------CATGCTTAA
ACTAATCCTCCACGGTTGCGGCGTGCTCCCC----TGCCTTCCATCATC----CTCATCATCAAGTCTA-----------
-AACTCTTTTCAAGTCCAAGCCAAGCCA-----ACCAAGCTACCACGGAATACCTCTCTCCCTCCACTACCTACAGCAAA
GCTAGCCAGCCACTGATCTCTCTCACTCCTCTCCTCTC-------------CTCTATATAAGCCCGTCCATGGCGGATGG
CTCTCCCGCCCTTTTCATCCTCTCATCATTTGATCACCCATATC--GACCCGGA----TAGCTGCTAATCAC--TTGTCT
GTTGTGGAGATGGCGTGTGATCAGCGGGGGATGAGAGGTGA---------GGCGGCGGCGGCCGGGGAGGAGGAGATGCT
TCGGCGCGGGCCGTGGACGGTGGAGGAGGACGTGCTCCTCGCCAACTACATCGCCGCGAACGGCGAGGGCCGGTGGAACG
CGCTGGCGCGGCGCGCGGGGCTGAAGCGCACGGGCAAGAGCTGCCGCCTGCGGTGGCTCAACTACCTGCGGCCGGACCTG
CGGCGCGGCGGCATGACGGCGGAGGAGCAGCTGCTCGTCCTCGAGCTGCACGCGCGGTGGGGCAACCGGTGGTCCAAGAT
CGCGCAGCACCTCCCCGGCCGCACCGACAACGAGATCAAGAACTACTGGCGGACGCGGGTGCAGCGCCACGCCAAGCAGC
TGCGGTGCGACGTCGGCAGCCAGCGGTTCAGGGACCTCGTGCGCGGCCTCTGGATCCCCCGCCTCCTCGAGCGCATCCAC
GCCGCAAACAACAACTCCGGCGACGGCGACGTGATAGCGCAGGCGACGGCGGCCGCGCTCCCGGTCGCGGCCGACGGGCG
GGGCTGGCCCGTCGACGACGTCTTCGACCTCGGCCCCAGCGCTGT---GGCTGATGTGGAGCTGTCATGCACCACCGCCC
TGTCGTCTTCGTCGTCGGTGTCCACGGACGGCTGCGGCGTGC---AGCCCCTGCCCCCGCCGGCGCCCATGGTGGCTACC
GCCGAGAGCGCGCACGGAAGCGTCATCAGCAGCGCTGCCATGCACGACACGGCGCTCTGGCAGCCGCCGCAGACGCACGG
CGGCCTCATGATGACCCAAGAACAACAGCACCACCAACAGGCAGAGTCGCAGCCGCAGCTGCTCGGCGCCGAGACGTGGT
GGTCGGATCAGACCTCGCTCCACGCCGGGCTGTACGCCGACGTCGGCTTCCCGGAGCTGGAGTTCGGCGGCGAGACCATG
TGGGGCGCCTGCGCCGATGACCTGTGGTGCACGGACATGCTGGGGCTGTGAAACATCAAACATCA-AACTACCGGTGACC
TGTGGTGACGAAGGGGAAGGTTATTATCGGAGCGTTCGCTACTAATCTTGCACTTAGCGCTCCAATAATCCCTTCTCCTC
TCCTCTCTCAAAACATGAGTATACTTCA---------CTAGCTAGCTAGTGTATCTTCTTCAGTATGTGTACTACGTGTA
ATGT---TGATGGATCTTTCATTTTTCTTTTTCCTTTTGGACTTTACTCATTCTTTCCTGGGTAAATACGGAGTGATTGG
TTTGTAACCAGCCGTGTGTAACTTTTGATGGCCCGGCTGAGGCCCCAATAAAACTTGAATCAACCATGCATCCCTAACGA
GGCTC------------------------------------TGTAATTTATTGATCTGTGGAGAGAGATCTCTAATCTTC
ATGCATGAACATTCTTATGCATGTTACTACAAAGAATTATTCGTCAAGTGGATCAAGATTGTGAGGAGGTGACGAAGCAA
TCACAACAAAAAAGAGTTCGAAATTAGAATGAATTGATCACGTGTGCGTAGCCGACCGCAGTTTTGTATCTGAAACCATT
TGC----TCCATCCCATGCCCCTCCCTCCAGATTATAAAAAGTATTCGGTGCCGATTAGGATGCGAGTCACCTTCCTCTA
ATCTAGTCTAGAGAAAGATAAG-------TAGATATTTCAGCTAGACGTCCGTACGGACCGGCCTCTACTCCGGCCAATC
CAATCCAATGATGCCATCAACTGAACATCCTTGTGTTTGTCTTGCTGATGGCGAGCGTCACTCAGAATTCCCAAAGAAAA
AGAGACACACGCAGAATTAATCGAGCACTG-GCATATGCTCCAGGTGATCGAATTGGACAGCACTAGCGATGGCAATATC
AACACATAGTTACAGACGCCGGGCCACGCG----TATGATTAGCAACGCACAAGGGAAGTGGTGCAAACTGTGTGCGGAA
AGGATGTAG-CTAGCATCCATCGCTTTAGC-----TTTGGCATGTCCAGCACATGATGAAAACGGCCGGAGAAAAGGGCA
GGAAAGCATCGGATTTCCC------------------------------
>chr2A_537
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--------------------------------------------------------TACACCGGACATGGGGTCAAAATC
AAAGCAAAGCAGCACGAGAAAAATTAAGCTAGCTAGCTTTAACTGGCGTGTGCCCGCGGGTTAGCGTCGTTAATCTGGCG
CTGTAATTCCAAAAGACGGGCTAATCACGCCTCAACTTTTGGCTTTTTCGAGTTTGGTTCATCATCAGATGCATGCTTAA
ACAAATCCTCCACGGTTGCGGCGTGCTCCCCGATCTGCCTTCCATCATCCATCCTCATCATCATCCGTCGTCCAGTCTAC
TAACTCTTTTCAAGTCCAAGCCAAGCCAAGCCAACCAAGCTACCACGGAATACCTCTCTCCCTCCACTACCTACAGCAAA
GCTAGCCA----------------------CTCCTCTC-------------CTCTATATAAGCCCGTCCATGGCGGATGG
CTCTCCCGCCCTTTTCATCGTCCCATCATTTGATCACCCATATAGAGATCCGGATAGCTAGCTGCTAGCTTCGCTTGTCA
GTTGTGGCGATGGCGTGTGATCAGCGGGGGATGAGAGGCGA---------GGAGACGGCGGCGGGGGAGGAGGAGATGCT
CCGGCGCGGGCCGTGGACGGTGGAGGAGGACGTGCTCCTCGCCAACTACATCGCCGCCAACGGCGAAGGCCGGTGGAACG
CGCTGGCCCGGCGCGCGGGGCTGAAGCGCACCGGCAAGAGCTGCCGCCTGCGGTGGCTCAACTACCTGCGGCCGGACCTG
CGGCGCGGCGGCATGACGGCGGAGGAGCAGCTGCTCGTCCTCGAGCTGCACGCGCGGTGGGGCAACCGGTGGTCCAAGAT
CGCGCAGCACCTCCCCGGCCGCACCGACAACGAGATCAAGAACTACTGGCGGACGCGGGTGCAGCGCCACGCCAAGCAGC
TGCGGTGCGACGTCGGCAGCCAGCGGTTCAGGGACCTCGTGCGCGGCCTCTGGATCCCCCGCCTCCTGGAGCGCATCCAC
GCCGC---CAACAGCTCCGGCGAAGGGGACGTGATAGCGCAGGCCACGGCGGCCGCGCTGCCGGTCGCGGCCGACGGGCG
GTGCTGGGCCGTCGACGACGTGTTCGACCTCGGCCCGGGCGCCGCGGCGGCCGACGTGGAGCTTTCCTGCACCACCGCCC
TGTCGTCGTCGTCGTCCGTGTCCACGGACGGCTGCGGCGTGC---AGCCCCTGCCCCCGCCGGCGCCCATGGTGGCTACC
GCCGAGAGCGCGCACGGAAGCGTCGTCAGCAGCGCTGCCATGCACGACACGGCGCTCTGGCAGCCGCCGCAGACGCACGG
CGGCCTCATGATGACCCAAGAACAACAGCACCACCAACGGGCAGAGTCGCAGC------TGCTTGGAGCCGAGACGTGGT
GGTCCGACCAGACCTCGCTCCACGCGGGGCTGTACGCCGACGTGGGCTTCCCGGAGCTGGAGTTCGGCGGCGAGACCATG
TGGGGCGCCTGCGCCGATGACCTGTGGTGCACGGACATGCTGGGGCTGTGAAACATCAAACTAC--------CGGTGACC
TGTGGTAACTGAGGGGAAGGTTATTATCGGAGCGTTCGCTACTAATCTTGCACTTAGCGCTCCAATAATCCCTTTTC--C
TCCTCTCTCAAAACATGAGTATACTTCAGTAACTTCACTAGCTAGCTAGTGTGTCTTCTTCAGTATGTGTACTACGTGTA
ATGT---TGATGGATCTTTCATTTTTCTTTTTCCTTTTGGACTTTACTCATTCTTTGCTGGGTAAATACGGAGTGATTGG
TTTGTAACCAGCCGTGTGTAACTTTTGATGGCCCGGCTGAGGCCGCAATAAAACTTGAATCAACCATGCATCCCGATCAG
GCTGTGGTGCCAAGAACGCTCTTATATTATGAAACTAAGGGAGTAATTAATTAATCTGTGGGGAGAGACCTCTAATCTTC
ATGCATAAACATTCTTATGCATGTTACTACAAAGAATTATTCGTCAAGTAGATCAAGATTATGAGTATGTGACAAAGCAA
CCACAACAAACTAGC---------TAGATTGAATTGATCACGTGTGCGTAACCGACCACAGTTTTGTATCGGAAACCATT
TGC----TCGATCGCATGCCCAT--CTCCAAACTATAAAAAGTATTCGGTGCCGATTAGGATACGAGTCACCTTCCTCTA
ATCTAATCTAGAGAAAGATAAGC-------AGATATTTCAGCTAGGCGCCCGTACGGACCGGCCTCTCCGG--------C
CAATCCAATGATGCAATCAACTGAACATCTTTGTGTTTGTCTTGATGATGGCGAGCGTCACTGAGAATTCCCCTAGAAAA
AGAGACACGCGCGGAATTTAACCAAGCACAAGCATATGCTCCAGGTGATCGAATTGGACAGCACTAGCGACCGCAAT--C
AGCACACAGATGCAGACGCCGGGCCACACGTACATATGATTAGCAACGCACAACGGAGGTGGGGCAAACTGTGTGCGGAA
AGGATGTACTCTAGCATCCATCGCTTTAGTT----TTTGGCATGTCCACCACATGATGAAAACGGCCGGAGAAAAGGGCC
GGAAAACATCGGATTTCCCGTGTTTTCTCACACGTACGTATCGGTC---
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------
------------S---------------S-------------------------------------------------S-
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-------------------------------------------------S---------------SS-------------
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--------------------------------SS----SSSSSSSSSSSSS-----------------------------
------------------------------------------S------------------------------S------
----------------SS------------S----------SSSSSSSSS-----------S------------------
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-----SSS------------------------------------------------------S--------S--------
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----S-------------------------------------SSS-----------S-----------------------
-------------S--------------S---------------------------------------------S-----
------------------------------------------S-------------------------------------
---------------------S----------------------------------------------------------
----------------------------------------------------------------SS--------------
--S---------------------------------------------------------------------S-------
-S-S----------------------------------------------------------------------------
----SSS------------------------SS-----------------------------------------------
-------------------------------------------------------------S-S-----------S----
-------------------------------------------S---SS----------S---------S-S----S-SS
SSSSS------------------------------------------------S--------------------------
-------------SSSS-------------------------------------S---------------SS--S-----
---SSSS--------------S----------------------------------------------------------
----------SSSS-SSSS---SSSSSSS---------SS-----------------------S----------------
---------------------------------------------------S---S-S----S-S--S-S---SS--SS-
-S-S------S---------S-S---------------------------------------------------S-----
------S-S---S----------------------------------S-------S------------------------
-------------------S-----------SSSS--------------------------------------------S
------------------------------------SSS----S--SSS
>forward_22
--ACTACTCCCTCCGTTCCCAA----------------------------------------------------------
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>reverse_2065
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----------------------------------------------------------------TCAACTACCGGTGACC
TGGG----------------------------------------------------------------------------
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