>input_sequence_63456
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----------------------------------------ATGGCAGCGCCGCCGTCCCACTCGTTCGTCTACATCGACG
CCGAGGCGCTCCACGCCGTCCTCCCCTTCCCGTCCCTGATCTCCCACCTCCGCGCGGGTCTCCCCGCCTTCTCCGAGGAC
ATCCACTGCCCGCACCGCGTCTCCTTCCCGGTCCCCACCTCGCCCTCCGCGGCGCTCCTCCTGATGCCCTCATGGTGCGC
TCACCCCTCGCTCCCCTACCTCGCCCTCAAGGCCGTCACCTCCTTCCCCGCCAACTCCCCGCACCGCCCCTCCATCCACG
CCACCGTCTCCCTCTTCAGCTCCGCCTCCGGCGTGCCCCTCGCATCCGTCGAGGGGTCCGCGCTCACCCTCCTCCGCACC
GCCGCGGTCTCCGCCCTCGCCGCCTCCCTCCTTGTCTCCCCCTCCCGGCCCCCCTCCACCCTCGCGCTCGCGGGTGCCGG
GGCCCTCGCGCCCTACCTCGCCGAAGCGCACCTGTCCGCGCTCCCCTCACTCTCCCGCATCTTGGTATGGAACCGCACCA
AGGCCAAGTCCGCCGCGCTCGTCGCCAAGCTCCGGGACGCGCACCCGGGAGTGGCCGTCGAGGAGGTCGACGGCATGGAC
GAGGCAGTGTCCGCGGCGGACATCGTTAGCTGCGCGACGGGGTCGCAGGAGCCGATCGTGCGTGGGGAGCTGCTGAGGCC
CGGGGCGCACCTTGACCTGGTGGGGTCGTTCACGCCGGCGATGCGGGAGTGCGACGACGAGGCGCTCCGTCGTGGCAGGG
TGTTCATCGACTTCGAGGCGGCGCTGGAGGAGGCCGGGGAGCTTGTGGGCGCGCTGCAGCGCGGCGTGCTGCGGAGGGAG
GATGTGGCCGGGACGCTCTCGGAGCTGGCCGCGGGGACCGTGGCCTGGCGGCGCAGCGACGATGAGATCACCGTGTTCAA
GTCCGTTGGCACGGCCGTGGTCGATCTCTTGGCGGCACAGTTGGCCTACGAGAACTACACTGCAACCAAGAACGCGTGA-
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>chr1B_1_TraesCS1B01G192900
CGTGCTCCAGCAGGCGCGCGAAAAAAGCGGCAGCGCACACGGTAGTTTTGGCACGTGTCGCCCAACGCGTTGGTTAAAAG
CCGCTCGTGGGCGCCCGCCAACCGCCACTCTTTCCCTCCCGCCGCGCCTTCTTCCTCGCCTCCTCCGATGCCCTGCCGCC
GTCGCGCCTTCTCCCCCGCCACACCTATGTGTTGTTTCATTTTTTTTTCAAGCACCGGCTGGTTGCGCGCGCTAGATTTT
GCAGTTCCTGGTGAAGCGCTAAAGTGGCATGCTAAATTTTGCAGCGCCTGGTAAAGCAACCACCCTCCTGTGCGCGCTAA
AACGCTATTTCGGCGCTGCAAATTAGCGCGCCGCACAACCGCACGTCTGTTGAAGATACTCTTATAAGCCATAGAGATGC
TCTAACAAATGTGTGGCTGAGAAAGCAGGCGCGGAGCCTAACCGACTACTTTAGTCAACGCAATCCCCATTCCCATTATG
TGCGATGGTGTTTCTTCATCTTCAAAAATGGCAAGCGGCAACGATGTATGTTGCAGAAATCTGCTTCAATGGAGTTTTCT
TGCAAATACTTCCGGACATGTGCCCTCTCTCTTTTTCATCGTGGTTTTCGTGATTTTGTGTTGTAATACGACATCTGTTT
AATGGTATACGAAATTTCCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATCCCCATTCCCAAACACGCAATCGCG
AACGCCGCGAGCAGAGCGGGAGCAGCCCCACCGCGGCAGCATGGCAGCGCCGCCGTCCCACTCGTTCGTCTACATCGACG
CCGAGGCGCTCCACGCCGTCCTCCCCTTCCCGTCCCTGATCTCCCACCTCCGCGCGGGTCTCCCCGCCTTCTCCGAGGAC
ATCCACTGCCCGCACCGCGTCTCCTTCCCGGTCCCCACCTCGCCCTCCGCGGCGCTCCTCCTGATGCCCTCATGGTGCGC
TCACCCCTCGCTCCCCTACCTCGCCCTCAAGGCCGTCACCTCCTTCCCCGCCAACTCCCCGCACCGCCCCTCCATCCACG
CCACCGTCTCCCTCTTCAGCTCCGCCTCCGGCGTGCCCCTCGCATCCGTCGAGGGGTCCGCGCTCACCCTCCTCCGCACC
GCCGCGGTCTCCGCCCTCGCCGCCTCCCTCCTTGTCTCCCCCTCCCGGCCCCCCTCCACCCTCGCGCTCGCGGGTGCCGG
GGCCCTCGCGCCCTACCTCGCCGAAGCGCACCTGTCCGCGCTCCCCTCACTCTCCCGCATCTTGGTATGGAACCGCACCA
AGGCCAAGTCCGCCGCGCTCGTCGCCAAGCTCCGGGACGCGCACCCGGGAGTGGCCGTCGAGGAGGTCGACGGCATGGAC
GAGGCAGTGTCCGCGGCGGACATCGTTAGCTGCGCGACGGGGTCGCAGGAGCCGATCGTGCGTGGGGAGCTGCTGAGGCC
CGGGGCGCACCTTGACCTGGTGGGGTCGTTCACGCCGGCGATGCGGGAGTGCGACGACGAGGCGCTCCGTCGTGGCAGGG
TGTTCATCGACTTCGAGGCGGCGCTGGAGGAGGCCGGGGAGCTTGTGGGCGCGCTGCAGCGCGGCGTGCTGCGGAGGGAG
GATGTGGCCGGGACGCTCTCGGAGCTGGCCGCGGGGACCGTGGCCTGGCGGCGCAGCGACGATGAGATCACCGTGTTCAA
GTCCGTTGGCACGGCCGTGGTCGATCTCTTGGCGGCACAGTTGGCCTACGAGAACTACACTGCAACCAAGAACGCGTGAG
GTCGATCGATGCATGGAACTCATGGACTGCGAGAAGCCTC--------TTCTTCTTGCAGGCAGATTGCACAGGCTGTTC
CTTCCAAAGAGTCATCATCAGAGAAATACAAATAAAT-AAACTGATCAGATTAGCAC-TTATGCTTCTGATCATCAGCTG
TGGCATATTCACTTGTTGTTAGGCCGATTCGAATAATAATGTGTTGGCAAATCATGATACCTCGTCTCTGTATCCGATTC
TAATAACATGGTGTGGTATTTATCAAGGAGAATTACAGTGTAATGGCTTATCTGTGAACTCAAATCTTTTGTATTGTTGG
CATTGTTGCTGAGTGTGTTGCAATGTCAGGACTCAGGTCTCAGGACCATCATGATTGCCAATATGGCTGCACATCTGAAT
GCTCTCTCGGGCGAGGATGAGGTCAGAACTTAATATAAGTGTTTTCAGATAATGGGAG--ACCCTAATAAGTGGGAGGAA
GCAGA--TAAAAGCATCACCTGATGGTTGTAGTTTTTTTTTTGAACCGAAAACCGTAGAACAATTATTCTATGCTATTCA
TATATCAATAATGAAAATAAAAAACAAAAGTCCAAGTATGTTACAAAAATCACCCAATGCCAGCTCGTGGGAAACCGATC
ATTACAAATTAATTCAAGTTTTCTTCAACCCAGCTTGATAGCAAGTCTAATATTTACTTTTAATCCTGTGCTTGATGAGG
AGCAAATCTGATTTAAGAGATCCTTTCCAAGAGTGGATGTATTGAGGCTGAGTTTTGAAGATTTTGTTATTCCTCTGCAT
CCAAAGTTGCCAGCGCCCCATGATCGTGATCTCCATAGCAATAGGACTTGGGTTGTTGAGGTAGTGAACAGATTTCATCA
TAAGCAGAGATTCCTCTATTTCTGAGAGGAGCAATGCAATCCCAGCAATTCATAGCAAAAGGACAGTCCCAAAATAGGTG
AAGAGAAGTTTCCTCTGTCCCAGTGTTGCACAGCCCACAATTGTAGGAAGGGA
>chr1A_932
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---------------------------------------------------CAATCCCCATTCCCAAACACGCAATCGCG
AACGCCGCGAGCAGCGCAGGAGCAGCCCCACCGCGGCAGCATGGCAGCGCCGCCGTCCCACCCGTTCGTCTACATCGACG
CCGAGGCGCTCCACGCCGTCCTCCCCTTCCCGTCCCTGATCTCCCACCTCCGCGCGGGCCTCCCCGCCTTCTCCGGGGAC
ATCCACTGCCCGCACCGCGTCTCCTTCCCGGTCCCGACCTCGCCCTCCGCGGCGCTGCTCCTCATGCCCTCATGGTGCGC
CCACCCGTCGCTCCCCTACCTCGCCCTCAAGGCCGTCACCTCCTTCCCCGCCAACTCCCCGCACCGCCCCTCCATCCACG
CCACCGTCTCCCTCTTTAGCTCCGCCTCCGGCGTTCCCCTCGCATTCGTCGACGGCTCCGCGCTCACCCTCCTCCGCACC
GCCGCGGTCTCCGCCCTCGCCGCCTCCCTCCTTGTCTCCCCCTCCCGGCCTCCCTCCACCCTTGCGCTCGCGGGTGCCGG
GGCCCTCGCGCCCTACCTCGCCGAAGCGCACCTGTCCGCCCTCCCCTCACTCTCCCGCATCTTGGTATGGAACCGCACCA
AGGCCAAATCCGCCGCGCTCGTCGCCAAGCTCCGGGACGCGCACCCGGGAGTGGCCGTCGAGGAGGTCGACGGCATGGAC
GAGGCGGTGTCCGCGGCGGACATCGTGAGCTGCGCGACGGGGTCGCAGGAGCCGATCGTGCGGGGGGAGCTGCTGAAGCC
CGGGGCGCACCTGGACTTGGTGGGGTCGTTCACGCCGGCGATGCGGGAGTGCGACGACGAGGCGCTCCGTCGGGGCAGGG
TGTTCATCGACTTCGAGGCGGCGTTGGAGGAGGCCGGGGAGCTTGTGGGCGCGCTGCAGCGCGGCGTGCTGCGGAGGGAC
GATGTGGCCGGGACGCTCGCGGAGCTGGCCGCCGGGACCGTGGCCGGGCGGCGCAGCGACGATGAGATCACCGTGTTCAA
GTCCGTTGGCACGGCCGTCGTCGACCTCTTGGCGGCACAGTTGGCCTACGAGAACTACACTGCAGCCAAGAACGCGTGAG
GTCGATCGATGCATGGAACTCATGGATTGCGAGAAGGCTC--------TTCTTCTTGCAGGCAGGTTGCACAGGCTGTTC
CTTCCAGAGAGTCATCATCGGCGAAATACAAATAAATAAAACTGATCAGATTAGCACTTTGTGCTTCTGATCATCAGCTG
TGGCATATTCACCTGTTGTTAGGCCGATTCGAATAAGAAGGTGTTGTCATCTCATGGTACCTTGTCTCTGTATCCGATTC
TAATAACATGGTGTGGTATTTATCAAGGAGAATTACAGTGTAATGGCTTATCTGTGAACTCAAATCTTTTGTATTGTTGG
CATTGTTGCTGAGTGTGCTGCAATGTCAGGACTCAGGTCTCAGGACCATCATGATTGCCAATATGGCTGCACATCTGAAT
GCTCTCTCGGGCAAGGATGAGCTCAGACCTTAATACAAGTGTTTTCAGATAATGGGAGA-ACCCTAATAAGTGGGGGGAA
GCAGATGTAAAAGCATCACCGGATGGTTGTAGTT----------------------------------------------
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>chr1D_932
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---------------------------------------------------CAATCCCCATTCCCAAACACGCAATCGCG
AACGCCGCGAGCAGAGCGGGAGCAGCCCCACCGCGGCAGCATGGCAGCGCCGCCGTCCCACCCGTTCGTCTACATCGACG
CCGAGGCGCTCCACGCCGTCCTCCCCTTCCCGTCCCTGATCTCCCACCTCCGCGCGGGCCTCCCCGCCTTCTCCGGTGAC
ATCCACTGCCCCCACCGCGTCTCCTTCCCGGTCCCGACCTCGCCCTCCGCGGCGTTGCTCCTCATGCCCTCATGGTGCGC
CCACCCCTCGCTCCCCTACCTCGCCCTCAAGGCCGTCACCTCCTTCCCCGCCAACTCCCCGCACCGCCCCTCCATCCACG
CCACCGTCTCCCTCTTCAGCTCCGCCTCCGGCGTGCCCCTCGCGTCCGTCGACGGCTCCGCGCTCACCCTCCTCCGCACC
GCCGTGGTCTCCGCCCTCGCCGCCTCCCTCCTTGTCTCCCCCTCCCGGCCCCCCTCCACCCTCGCGCTCGCGGGCGCCGG
GGCCCTCGCGCCCTACCTCGCCGAAGCGCACCTGTCCGCCCTTCCCTCGCTCTCCCGCATCTTGGTATGGAACCGCACCA
AGGCCAAATCTGCCGCGCTCGTCGCCAAGCTCCGGGACGCGCACCCGGGAGTGACCGTCGAGGAGGTCGACGGCATGGAC
GAGGCGGTGTCCGCGGCGGACATCGTGAGCTGCGCGACGGGGTCGCAGGAGCCGATCGTGCGGGGGGAGCTGCTGAGGCC
CGGGGCGCACCTTGACCTGGTGGGGTCGTTCACGCCGGCGATGCGGGAGTGCGACGACGAGGCGCTCCGTCGGGGCAGGG
TGTTCATTGACTTCGAGGCGGCGCTGGAGGAGGCCGGGGAGCTTGTGGGCGCGCTGCAGCGCGGCGTGCTGCGGAGGGAG
GATGTGGCCGGGACGCTCGCGGAGCTGGCCGCCGGGACCGTGGCCGGGCGGCGCAGCGACGATGAGATCACCGTGTTTAA
GTCCGTTGGCACGGCCGTGGTCGATCTCTTGGCGGCACAATTGGCCTACGAGAACTACACTGCAACCAAGAACGCGTGAG
GTCCATCGATGCATGGATCTCATGGATTGCGCGAAGGCTCTTCTTCAGTTCTTCTTGCAGGCAGATTGCACAGGCTGTTC
CTTTCACAGAGTCATCATCAGCGAAATACAAATAAAT-AAACTGATCAGATTAGCAC-TTGTGCTTCTGATCATCAGCTG
TGGCATATTCACTTGTTGTTAGGCCGATTCGAATAAGAATGTGTTGTCGTCTCATGATACCTTGTCTCTGTATCCGATTC
TAATAACATGGTGTGGTATTTATCAAGGAGAA-TACAGTGTAATGGCTTATCTGTGAACTCAAATCTTTTGTATTGTTGG
CATTGTTGCTGAGTGTGTTGCAATGTCAGGACTCAGGTCCCAGGACCATCATGATTGCCAATATGGCTGCATATCTGGAT
GCTCTCTCGGGTGAGGATGAGCTCATACCTTAATACAAGTGTTTTCAGATAATGGGAGAGACCCTAATAAGTGGGAGGAA
GAAGATGTAAAAGCATCACCGGATGGTTGTAGTT----------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------
-------------------------------------------------------------S------------------
----------------------------------------------------------S----------------S----
-----------------------------------S--------------------S-----S-----------------
S-------------------------------------------------------------------------------
----------------------------------------------------S--S------------------------
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---------------------------------------S----------------------------------------
-------S------------------------------------------------------------------------
-----S--------------------S-----------------------------------S-----------------
------------------------------------------------------------------------S-------
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------------------S-------------S------------S----------------------------------
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--------------------------S---------S-------------------------------------------
------S--------------S--------------------------------------S-------------------
------------------------------------S---------S--SS-----------S-----------------
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---------------------S-----S-------S--------------------------------------------
--------------------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_476
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--------------------------------------------------------AACGCAATCCCCATTCCCAT----
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>reverse_2037
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------------------------------------CCTCTTCTTCTTGCAGGCAGA-----------------------
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