>input_sequence_63449
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---------------------------------------------------ATGGCACTTGCTCCGCGCTCGGCTCTGCC
TCTGCGCTCCCTGGTGTGGCTAAGGATCATGTCGCACAGCAAGCCATATCTGATCTCTTTCTCCTCCTCGTCCTCCTCCG
ACGATGCCATTCTGCTGGCAGCTCGAGGAACTGCCACTCCAGTTGCTCGTGCCGTTCAGCCTCCAACCGCTCCAGGTAGC
TAGTAGCTTGCTGCCAACCCACTCAATTAGTTAGTACTGTACTTTCTGCACACACGCATGAAATTTGTGTTGTCATTTGA
TATCTGCTAATTGTTACAACTACTCTCTGTCAGGTTCGAGTTGTGGCGGGTCCGTTACTCCGGAGCAAAAAGTTCTTCAC
CCACTTCCATCTAGCACACCTAAATTTCCAATCCACAAGCCTTCTCGTCCCGCCCTCCAATATCCTGACCAGCCATGCAA
CATACTTCAGCCTCTGAAAGACAAACCTTTGCCGGCAAAACATGGTGATCACAAAGTTCCCCAAAGCCCCAAGTTTAGCC
ACTTCCCGAACCAGTCGATTGCTGAGCCTGTTGGCAAGTCTTTGACGCCCCTGGAAGATCCTAGACACTCTGTCCCTGGT
GATTCATGTATCACACTTCAACCTGTAACTCACAAGTATTCACCGAAAGCACGTCCTAATCACAAAGTTCGTGAAGATCC
TGATATTCGAGATCGCCGAATTCCCAAGGACAGGTCACTCCACGAGCCACCGCACCCAACTCCTGCCCCTTTCATCAACG
AGCATGCTTACAAGTCTCCGCCGAAACCATATCCTGATCACAAAGTTTGTGAAAATCTTGATATTCGAGTTCGCCAAATT
CCCAAGGATGGCTCTTTCCGCGAGCCGCCACACCCAAGTCCTGACCCTTTCGTCAACGAGCATGCTTACAAGTCTTCACC
GAAACCACATCATGATCACAAAGTTTGCGAAGATCCTCCTATTCGAGTTAGCTCTATCCGCCCGCCGCCGCACCCAACTC
CTGACCCTTAG---------------------------------------------------------------------
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>chr7A_1_TraesCS7A01G366400
TACGTCATGGCATGCATACACGAGAAGAGAAGATCTAACGACCTACATGAAGCAGCGGTGAAAAATTCGATCAAATGAAG
GAAACCAACACTCGCTAGAGGTAGAGATTCGCCATGCCGTCCAGGCGTGCGGTCGAGGCGCATGGCGACGAGAGCGGCAA
CATTGGTGGTGGCATCCAGCCGTGCCGTTTAGGTAGGCGCAGTTTAGGCTTCGTTGTCGTGGCATCGGAGATAGCAGATA
AGTGAGATTGATGGTAACGGTTTGCGACATGATTTTCAGGCAGATGAGTTTGGACGCGATTTTATGGGAAGGTGTGCTGC
CCATCAGGGCATGCAATTATGGTGATTGCGATTTTTTAAGTAATAAAGGTGTGACGTCTGGGACGCAGTTTAGGCTTCGT
TGTCGTGGCATCGGAGGTGCAGATAAGTGAGATTGATGGCAACGGTTTGCGACGTGATTTTCAGGCAGGTGAGTTTGGAC
GCGATTTTATGGGAAGGTGTGCTGCCCATCAGGGCATGCAATTATGGCGATTGTGATTTTTTAAGTAAATGTGTGACGTC
---TGGGGCATGTAATTATGATGATTACGATTTTCTCAAAGGGAAGGTGTGACACC-------CATTGGGTCATGTAATT
ATGATGATTGAATCGAATTGTCACTTGCCAATCAAAAAAAAAAATAGGACACATGGATGAAGGTGGGCAGAACGTGGTCC
GTC-GGCAGGAAAAGGAATATTAGGTTCTTTTTAGACAGCAGAGATTCCAGTTGATGGTCATGCCTCGATGAATGCACAT
GGTAGTTAATTTTGTCGTTGGGGAAGGTGCCAGGTAAGTTCCTCGTTGAGCTACGACATTTCTGATATGGAGTAGTACTA
CTCTATTTAAAAGTATAAATACCCATACTACAAGCGGCTAATTTAGAGGCAGTCATCATAGATCTAGACTTCCTTCTGAG
CTTTGACAGAAGCACTGATCAACCAACTGTCCTGTAGGTAGCTGGTGAGAAATGGCACTTGCTCCGCGCTCGGCTCTGCC
TCTGCGCTCCCTGGTGTGGCTAAGGATCATGTCGCACAGCAAGCCATATCTGATCTCTTTCTCCTCCTCGTCCTCCTCCG
ACGATGCCATTCTGCTGGCAGCTCGAGGAACTGCCACTCCAGTTGCTCGTGCCGTTCAGCCTCCAACCGCTCCAGGTAGC
TAGTAGCTTGCTGCCAACCCACTCAATTAGTTAGTACTGTACTTTCTGCACACACGCATGAAATTTGTGTTGTCATTTGA
TATCTGCTAATTGTTACAACTACTCTCTGTCAGGTTCGAGTTGTGGCGGGTCCGTTACTCCGGAGCAAAAAGTTCTTCAC
CCACTTCCATCTAGCACACCTAAATTTCCAATCCACAAGCCTTCTCGTCCCGCCCTCCAATATCCTGACCAGCCATGCAA
CATACTTCAGCCTCTGAAAGACAAACCTTTGCCGGCAAAACATGGTGATCACAAAGTTCCCCAAAGCCCCAAGTTTAGCC
ACTTCCCGAACCAGTCGATTGCTGAGCCTGTTGGCAAGTCTTTGACGCCCCTGGAAGATCCTAGACACTCTGTCCCTGGT
GATTCATGTATCACACTTCAACCTGTAACTCACAAGTATTCACCGAAAGCACGTCCTAATCACAAAGTTCGTGAAGATCC
TGATATTCGAGATCGCCGAATTCCCAAGGACAGGTCACTCCACGAGCCACCGCACCCAACTCCTGCCCCTTTCATCAACG
AGCATGCTTACAAGTCTCCGCCGAAACCATATCCTGATCACAAAGTTTGTGAAAATCTTGATATTCGAGTTCGCCAAATT
CCCAAGGATGGCTCTTTCCGCGAGCCGCCACACCCAAGTCCTGACCCTTTCGTCAACGAGCATGCTTACAAGTCTTCACC
GAAACCACATCATGATCACAAAGTTTGCGAAGATCCTCCTATTCGAGTTAGCTCTATCCGCCCGCCGCCGCACCCAACTC
CTGACCCTTAGTCGATGAGCACGCTTACAAGTCTTCGCCGAAAGAACATCATGATCACAATGTTTGCGAAGATCCTGATA
TCCGAGTTCGCCCAATTCCCAAAGATAGCTCATTCCACAAGCCGCCGCACCCAACTCCAGACCCTATCATCGACGACCAC
GACAAAGTTTGAACACCCCATCGATGAGTCTTGGACGGGAATTGCCAGTTATTCAGGCCCTACGAGCAAAGGCTTGCAGT
GGTGAGCTAGGATAAAAATCTCGGCAGTTACTGTCACGTTACCGCCGCAATGACCATGTAATCTCAATGTTGCCATATTT
TTTTTTCTTCCGAAAAGGAGGAATACCCCCGGCCTCTACATCAATGTAACATCAATGCTGTCACATGCAGTGATATTTTG
TAATGTTCCAATCAACTTTATCAAATAAAGGTGTACGTTAGATTTTCGTTTGATGAAAAAGGATCCTC-GCTTTATATTA
TAAAGCAACAGCGACGACACAAACAAACGGTAGCAAGGTTCCGTCCAACGGACCGCAGCAAACACACACAAAGAAGTACG
AGAGACAAAAGTCTTGTTGGGGGATCAGCACAACAGGCCTCAAAAGCAGAAACGAAATCTAATCTGGCTCCAGAGGAGGC
GACGGAAGCGGTGATGGGAGCGATGGCGCTAGCCGGGAAGC-----------------------------GGAGGAGCGG
AGCTCGGTGATCATCCTGTCA-----------------------------------------------------------
---------------------------------------------------------ATGTAGATGCGGTCTTTGCGTTT
GCTAAGCGGCCTCTAGAGTTATAGAAATCCACA-------------------------CAATTTGTAAATGGTGTCAGTC
ACACGCAGTGGGGAT----------AATATGCTCAATCACTAGCTTATTACGAACATTCCATAGTGTCCACAAA-AGAGA
CCCCACCAACACCCATAAGGAGGGTCGCTCAGTAGTAGGAATTGTGAGCACCTCCGCAAACATATCTCGGAGGTTGTCAT
GGCACCAACCGGCACCCACAGTCTCTCACGAAGGCAACTCCACAAAAATCTCGCCGAGGGGCACACAAAGAAG
>chr1B_430
AGATAA--------------------------------------------------------------------------
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-----------------------------------ATGGCGACGGTTTGCGACGTGGTTTTCGGGCAGGTGATTTCTGAT
GCGATTTTAAGGGAAGGTGTGACGCCCATTGACACATGTAATTATGGTGATTGCGATTCTTTAAGGGAAGATATGACTCC
CATTGGCGCATATAATTATGGTGATTGTGATTTTT---AAGGGAAGGTGTGACGCCCGTGCTTCATTGGGTCATGTAATT
ATGATGATTGAATCGAATCGTCACTTGCCAATCGAGAAAAAAGGTAGAGTGGATGGACGAAGGTGGGCAGAACGCGGTAT
GTCTGGCAGGAAAACGAACCTTAGGTTCTTTTTAGATAGTAGAGAGTGCCATCGGTAGGTACATCGGCTGCTTAGCAAAG
CTAGGACCTGTCCATCCTTCATGTTCCT----------------------------------------------------
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-------------------------ATCTTGGCGCAGAGTACGTTGATGATGTGGCCGAACAGATGGACTGCACGGATGC
TGT--------------GAAGAACGAGCAACGACCTCACCAAG-------------------------------GCTAGC
CAGCAGCATGTTGACACATGACCTAGTCTAGAAGG---------------------------------------------
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---------------------------------------------------------------AAAGATCGAGCAGATGC
ATTTACGTCATGGCAT----------------------------------------------------------------
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-------------------------------GCATAAACAGGGAGGGAAGATCAATCAAGTGAGCTACATGAAGCAACAA
TGAAAAATCCG--------ATCAAATAAAGG-------------------------------------------------
--AAACAACACTTCTAGAGATTCGCCATGCCGTCCAAGTGTGCAGTCGAGGCGT--------------------------
------------------------------------------------------------------------------GA
GGCGGCGACAACGGCTACATCGGTGGCAGCATCCAGGCCGTGTCGTTCTGGCGCGTAAGGCTTCGTTTCTGCAGCATCGG
AGGTGGCGGATCAATTGCGACGTGATTTTCGGACATGTGATTTCTGATGAGATTTTAAGGGAAGGTTTGGGGCCCATTGA
CGCATGTAATTATGGAGATTGCGATTCTTTAAGGGAAGGTGTGACTCCCATTGGCGCATGTAATTATAGTGATTGCGATT
TTTAAGGGAAGGTATGACGCCCGTGCTCCATTGGGTCATGTAATTATGATGATTGAATCAAATCGTCATTTGCCAATCAG
GAAAAAAAGGTGGAGTGGATGGACGAAGATGGACAGTCAGAACGCGGTCCGTCTGGC-----------------------
------------------------------------AGGAAATGGAACGTTACGTTCTTTTTAGATAGCAGAGAT-----
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>chr5B_2438
TTCGATGA------------------------------------------------------------------------
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-------------------------------------------------------AAAAGGGTTCCCC-GCTTTATATTA
TAAAACAACGGCCACGACAAAAGCATACGGTAGCAAGGTTCCATGCAGCGGGCCACAACAAACACACACAAAGTAGTTTG
AGAGACAAAAGTCTTGCTGGGGGATCAACACAAGAAGCCCCAAAAGCATAAACAAAATCTAGCCTGACTCCAGTGGAGGC
GGCGGAAGTAGCGGTGGGAGCGGTGGCGTGAGCCGGGATGC-----------------------------GGAGGAGCGG
AGCACGGCGATCGTCCTGTCA-----------------------------------------------------------
---------------------------------------------------------ATGTAGATGTGGTCCTGGTGCTT
GCTAAGTGGCCTCCAGAGCTGTAGAAAGCCACA-------------------------CAATTTGTAAATGGCGCCAGTC
ATATGCAGCGGG-AT----------AATATGCCCAGTCACCAACTTATTATGGACATTCCATAATGTCCAT-AA-AGCGA
CCCCACCAACACCCATAAGGAGGGTCGCTCAATACTAGGAAATGTGAGCACCTCCGCAAACATATCTAGGATGTTGTCAT
GGCACCAACTGCCACCCACCGTCTC--ACGAAGGCAGCTCCAGAAAAATCTCACCGAGGGGCACACAAAGAAG
>chr5D_2441
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---------------------------------------------------GATGAAAAGGGTTCCCCTGCTTTATATTA
TAAAGCAACGGCCACGACAAAAGCAT--GGTAGCAAGGTTACGTCCAGCGGACCACAGCAAACACACACAAAGTAGTACG
AGGGACAAAAGTCTTGCTGGCGGATCAGCACAAGAAGCCCCAAAAGCATAAACGAAATCTAGGCTGGCTCTGGTGGAGGC
GGCGGAAGTAGCGGTGGGAGCGGTGGCGTGAGCCAGGATGC-----------------------------GGAGGAGCGG
AGCGCGGCGATTGTCCTGTCG-----------------------------------------------------------
---------------------------------------------------------ATGTAGATGCGGTCCTGGCGCTT
GCTAAGCGGCCTCCAGAGCTGTAGAAAGCCACA-------------------------CAATTTGTAAATTGCGTCAGTC
ACATGCAGCGGG-AT----------AATATGCCCAGTCACCCGCTTATTACAGACATTCCATAATGTCCAT-AAGAGCGA
CCCCACCAACACCCATAAGGAGGGTCGCTCAATACTAGGAAATGTGAGCACCTCCGCAAACATATCTGGGATGTTGTCAT
CGCACCAACCGCCACCCACCGTCTC--ACGAAGGCAGCTCCACAAAAATCTTGCCGAGGGGCACACAAAGAAG
>SNPs
-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---------------S-----S---------S--SS--S
---------S-----------SS------SSSSS----S--------S-----S----S------SS--SS-S----SS-
------S----S--------S-----SS------SSSS---------------S--------------------------
------------------S--------------S-S------SS---SSSSS-----S----------------S---SS
--------------S---SS----------------S--S-----S-S-SS-S-S-S-SS-SSS-SSSSSSSSS---S-S
SSSS-SSSSS-SSS--S--SSS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS---S--S----S--S-S-SSSSSSS--SSSS-SSS-SSS-SSS-SS-SSSSSSSS
SSSSSSSSSSSSSSSSS-S--SS----S---SS--S-S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S----
S--S---S--S--S--SSSS--SS-S-SSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---S-S----S-
SSS--SSSS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-SS---SSS-S-S--S------SSS--S-SS-S--SSS-SSSSSSS
-S-SSSSS-SSSSSSSSSS------------SSSSSSSSSSSSSSSSSSSS--------S--S---S-------------
------------S------S--S--S---------------------S------S------------------S------
----------------S----------------S-S---S--------S------------SS----------S------
-S-------S-S-S--------S-----SS--------S-----------------------------------------
-------S------------------------------------------------------------------------
-----------------------------------------------------------------------S-----S--
-------------S----S-S------S--------------------------------------------S-------
---S----S-----------------------S--S----S-----------S----------S------SS-----S--
-------------------------------S--S------S-------------------------S---S--------
-----------S-------S-----SS---------S------------------------------------
>forward_121
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---------------------TAGAGATTCGCCATGCCGTC---------------------------------------
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>reverse_1493
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----------------------------------------------------AAAGTTCCCCAAAGCCCCAA--------
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>forward_1220
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TAGTAGCTTGCTGCCAACCC------------------------------------------------------------
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>reverse_2212
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---------------------------------------------------TTCAGGCCCTACGAGCAAAG---------
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