>input_sequence_63444
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----------------------------------------------------ATGAAGGATCATCATCCGCCTGCATCCC
CATTAGGATCAGGGGAACGTTCCCCGTTTAAAGATCTGACAAATACGCCTACTCATGTGAATGCAAATCAAGCGGGTGAA
AAACTGCAAGAACAAACACCAAAAAGTGGTCAAAATTGGTTTGCACGAATGTCTAATGAGAAGAGAGCGGAATACAACCA
GAAGCGATGTATTGCCCGAGCACGAAGACACCTTCTCCACTACGATCTACTCACAGCGCCTACGGTTCAGAGGTAATGTT
ACACCGGACCCTGTTATGGGTCTTTCATCATTCGATCACTAAAATTGCTTTTGTTCACATTATTATATGACAGATGCATG
TTCACTGAAAGTACTCCTGTGAAGGTACTTTGTCCATCTATAGTGTGTCGATGTCAAAATTCAGTACCCTGATTAGAGTG
ACCTTATTTCCATATGCAGTTGCAGATTTCAGTGTG--A--TAGTTCCAGAGTGTACTTTGTATGATTTGTTCAAAATCT
GCACGTTTATTTCCATCTGCTTTGAAGGCTGCATATTCTACTAACTTCCTTTGTAGAAGCATGCTCATAGGAAGGTAAAT
AGGATTCTTGAGTTCGTCTTTTGTTTTTGTTGACTGTAATGTTAAAGCAGAACGATTGATGCTGCTGCAGTTCATCTACA
TTGATTCTTGATTTACCCTTCTTATTACCATTTGCTAACTTAACCACCTCT------CTCTCTCATGTTGTTTCTGAAGA
TGTTTTATGTGTCATGTCGACAAGGGTGTTTGATGGGAAATCTAGGAAGGCTGCATATGAGGTGAATCAAGGTAATATAT
ATGACATAGTGAAGGATAAACTCCTCTTCCTCATGTTGTTTCTGGATATGTTATTTTCC-GTCATATAAGAAAGCTAGGA
TTTATTTTGGCCATGTGATTTCCGTAAACATATACTGGAAATATTTCATACAAAGTTTCCCTCATATCAAACTATTGTTT
TTCTTCTAACAGGAAGCTGGTAG---------------------------------------------------------
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>chr5A_1_TraesCS5A01G304500
AGACAAAGCTAATACAATCTACTTTTACATTTTTGTTTCATGAAATGACTACACAATGATATAGAAGATAGCGTGTGTAC
AAAAATAATCATAATGTCAATGTGTCCGTAACATTAGGAAAGTCAATTTAGTACCTGGTATATGAGGCCCAGTATATGAT
CCTTCCACGCAAGACAAATTGATGCGTGTGATTCTTCTCTTTCTGTATAATCATATAGTTCATGGCCGAGAGTGGTCATT
TTAGTGCACGATGTTCTGCATACACCGCAATGCCAAAGTAGCATTGTTGTGGGATAGTAGCCATGGAACTAGCGGTAAAA
GGTGAATTATCATGATCCACGACAATGCCAAACGCAGCATTAAAAGGGTTACAGTCTGATTTTTGAGTTATTT-------
----TTAATATAGTTGACAAAATTCATTGTGTTGCTGAAATTGCCTTTTAAATGTTGTCTGGAGTCTGCACTTTCCCGCA
ATACCATGACGGACTGCTCAAGTGGCAAGAAAAATACCTTGTGAACTTTTCGAGGATGTTTTCAATGATCTACTAATATC
TGAAATTCAGGCAATCTCACTAAGATTATTCATATCTTCTTTATTTGCCTTCTCCCTAACAACAGATAGTTTATTTCTAC
TGGTTTAGACCATTGGCAGTCATCAACATTTGCTGCAGCTAAGGTCCTTTTTGTCACCTTTTTAGATGTACCTTTTTATA
CACAAAAACCTTTCTTGTTTCACTGAATCCAGGCAAGACTTGAGAGTTTACTTTTTGCACTGAACCCAAGCAAGACTTAA
CATTTTAGGGTTACTTGTTTGCAACATTTAAAAATTCAGCTTCTCAATATTAGATGAGAACTTAGCATACCTTCAGTTAA
GATCCATGTGTACTTTCTCCAACATTTAAGAATTCAG-TCACATCCCTTTGTATTAAATTTATCCAGAGGTGTAGCATCA
TTATGTGCTTGTACTGATTTAAAATGTTCCCTATTTTCTTGACATGCCACGGATGAAGGATCATCATCCGCCTGCATCCC
CATTAGGATCAGGGGAACGTTCCCCGTTTAAAGATCTGACAAATACGCCTACTCATGTGAATGCAAATCAAGCGGGTGAA
AAACTGCAAGAACAAACACCAAAAAGTGGTCAAAATTGGTTTGCACGAATGTCTAATGAGAAGAGAGCGGAATACAACCA
GAAGCGATGTATTGCCCGAGCACGAAGACACCTTCTCCACTACGATCTACTCACAGCGCCTACGGTTCAGAGGTAATGTT
ACACCGGACCCTGTTATGGGTCTTTCATCATTCGATCACTAAAATTGCTTTTGTTCACATTATTATATGACAGATGCATG
TTCACTGAAAGTACTCCTGTGAAGGTACTTTGTCCATCTATAGTGTGTCGATGTCAAAATTCAGTACCCTGATTAGAGTG
ACCTTATTTCCATATGCAGTTGCAGATTTCAGTGTG--A--TAGTTCCAGAGTGTACTTTGTATGATTTGTTCAAAATCT
GCACGTTTATTTCCATCTGCTTTGAAGGCTGCATATTCTACTAACTTCCTTTGTAGAAGCATGCTCATAGGAAGGTAAAT
AGGATTCTTGAGTTCGTCTTTTGTTTTTGTTGACTGTAATGTTAAAGCAGAACGATTGATGCTGCTGCAGTTCATCTACA
TTGATTCTTGATTTACCCTTCTTATTACCATTTGCTAACTTAACCACCTCT------CTCTCTCATGTTGTTTCTGAAGA
TGTTTTATGTGTCATGTCGACAAGGGTGTTTGATGGGAAATCTAGGAAGGCTGCATATGAGGTGAATCAAGGTAATATAT
ATGACATAGTGAAGGATAAACTCCTCTTCCTCATGTTGTTTCTGGATATGTTATTTTCC-GTCATATAAGAAAGCTAGGA
TTTATTTTGGCCATGTGATTTCCGTAAACATATACTGGAAATATTTCATACAAAGTTTCCCTCATATCAAACTATTGTTT
TTCTTCTAACAGGAAGCTGGTAGAATATGCAGCCTTCAAAGCAGATGTTTGTAAATTTTATGCCAGGTGAGCCGCTTTCA
TTTTAATGCTTGAGTGCATTTCTCTGAGCTTTGAAGTCCTAATAGTGGCGGCGGTAGGAACCCAGCCCCTTCTCCCTTGC
CTGCTCCGGCAATGATGGAGGCGAAGAGGAGAAGCGCCAATAGGATAGGTCGCTATGAGCGTGTGAGGACAAGTGGTAAC
GCTCTGCGCCCTCTGCTGGGGCGGCAGCGCCACCGTTGCCACGTGCCTCGGCTTCTCCATCGGATGGAAGGTTACATCAC
CCCCCTTCTGCCACTCTTGCGTTCTTTGGTGATTTCTATGTATTCAATATTAACCGTTCTCGGATTTTGTTGCATTTCTG
AAAAGCTATGAGAAGAAATAATTAATTTGCGCTTAATTACTGTAGTGGGGTAAGGGATATTCAGAATTTGTGGTCATATT
TGTAGAACAACATCAGGGATAATTAATGTGAAAAGGGGATATGAATGGTTGTGGGTTCGGCCGGGGAGGCGACGGCGGCG
GGAAAAAGCGGCGCGTCATCAGATAGCAGTGACTACAGGAAGAATACTGTTGTGATGATCATATACATATATATGTATTC
CAGTTCGTTGCTCGGTTAGTATTGATTTCTTATCACTTCCTTTTTCTTGTAGTCAAGTTTTGAAAGCATGCTTTGATGAT
AACTTCATCCGT-ATACTCTGCCGCTGGTTTCAAGTCATAAGCAGATGGAGATCATCAGTGCATCTTCTCTTACGCAACT
GCTACTGCAATCGACTCCTTTGCAAGCGCTGGTAAGATCTTTCTACACAGCTTAGCTACATCTCTCTTCTTAAATTTACT
AGGATTTTTTTAGTTGCTTTTCCTCTAATAAGATGCATCATACTTATTATTGAATAGTTTATAAA--ATATATATTCTTG
CTGCACATTTTGTATCAACTGATAACTTTGAAACTTTTCTTCTCTCATTAGATCATGCTTACTATT
>chr1A_1
AGACAAAGCTAATACAATCTACGTCTACATTTTTGTTTCATGAAATGACTACACAATGATATAGGAAATAGCGTGTGTAC
AAAAACAATCATAACGTCAACGTGTCCATAACATTAGGAAAGTCAATTTAGTACCTGGTATATGAGGCCCAGTATATGAT
CCTTCCACGCAAGACAAATTGATGCGTGTGATTCTTCTCTTTCTGTATAATCATATAGTTCATGGCCGGGAGTGGTCGTT
TTAGTGCACGATGTTCTGCATACACCGCAATGCCAAAGTAGCATTGTTGTGGGATAATAGCCATGGAACTAGTGGTAAAA
GGTGAATTATCATGATCCACGACAATGCCAAACGCAGCATTAAAAGGTTTATAGTCTGATTTTTGAGTTATTTTTAATAA
GCTCTTAATATAGTTGACAAAATTCATTGTGTTGCTGAAATTGCCTTTTAAATGTTGTCTGGAATCTGCACTTTCCCGCA
ATACCACGACGGACTGCTCAAGTGGCAAGAAAAATACCTTGTGAACTTTTCGAGGATGTTTTCAATGATCTACTAATATC
TGAAATTCAGGTAATCTCACTAAGATTATTCATATGTTCTTTATTTGCCTTCTCCCTAACAACAGATAGTTTATTTCTAC
TGGTTTAGACCATTGGCATTCATCAACATTTGCTGCAGCTAAGGTCCTTTTTGTCACCTTTTTAGATGTACCTTTTTATA
CACAAAAACCTTTCTTGTTTCACTGAATTCAGGCAAGACTTGAGAGTTTACTTTTTGCACTAAATCCAAACAAGACTTCA
GATTTTAGGGTTACTTGTTTGCAAAATTTAAAAATTCAGCTTCTCAATATTAGATGAGAACTTAGCATACCTTCAGTTAA
GATCCATGTGTACTTTCTCCAACATTTAAGAATTCAG-TCACATCCCTTTGTATTAAATTTATCCAGAGGTGTAGCATCA
TTATGTGCTTGTACTGATTTAAAATGTTCCCTATTTTTTTGACATGCCACGGATGAAGGATCATCATCCGCCTGCATCCC
CATTAGGATCAGGGGAACGTTCCCCGTTTAAAGGTCTGACAAATACGCATACTCATGTGAATGCAAATCAAGCGGGTGAA
AAACTGCAAGAACAAATACCAAAAAGTGGTCAAAATTGGTTTGCACGAATGTCTGATGAGAAGAGAGCGGAATACAACCA
GAAGCGATGTATTGCCCGAGCACGAAGACACCTTCTCCACTACGATCTACTCACAGCGCCTACGGTTCAGAGGTAATGTT
GCACCGGACCCTGTTATGGGTCTTTCATCATTTGATCACTAAAATTGCTTTTGTTCACATTATTATACGACAGATGCATG
TTCACTGAAAGTACTCCTGTGAAGGTACTTTGTCCATTTATGGCGTGTCGATATCAAAATTCAGTACCCTGATTAGAGTG
ACCTTATTTCCATATGCAGTTGCAGATTGCAGTGTGACA--TAGTTCCAGAATGTATTTTGTATGATTTGTTCAAAATAT
GCATGTTTATTTCCATCTGCTTTGAAGGCTGCATATTCTACTAACTTCCTGTGTAGAAGCATGCTCATAGGAAGGTAAAT
AGGATTCTTGAGTTCGTCTTTTGTTTTTGTTGACTGTAATGTTAAAGCAGAACGATTGATGCTGCTGCAGTTCATCTACA
TTGATTCTTGATTTACCCTTCTTATTACCATTTGCTAACTTAACCACCTCT----CTCTCTCTCATGTTGTTTCTGAAGA
TAGTTTATGTGTCATGTCGACAAGGGTGTTTGATGGGAAATCTAGGAAGGCTGCATATGAGGTGAATCAAGGTAATATAT
ATGACATAGTGAAGGATAAACTCCTCTCCCTCATGTTGTTTCTGGATATGTTATTTTTTGGTCATGTAAGAAAGTAAGA-
-TTTTTTTGGGCACGTGATTACCGTAAACATATACTGGAAATATTTCATACAAAGTTTCCCTCATATCAAACTATTGTTT
TTCTTCTAACAGGAAGTTGGTAGAATATGCAGCCTTCAAAGCAGATGTTTGTGAATTTTATGCCAGGTGAGCCTCTTTCA
TTTTAATGCTTGAGTGCATTTCTCTGAGCTTTTAAGTCCTAATGGTGGCGGCGGTAGGAACCCAGCCCCTTCTCCCTTGC
CTGCTCCGGCAATGATGGAGGCGAAGAGGAGAAGCGCCAATAGGATAGGTCGCTATGAGCGTGTGAGGACAAGTGGTAAC
GCTCTGCGCCCTCTGCTGGGGCGGCAGCGCCACCCTTGCCACGTGCCTCGGCTTCTCTGTCGGATTGAAGGTTACATCAC
CCCCCTTCTGCCACTCTTGCGTTCTTTGGTGATTTCTATGTATTCAATATTAACCGCTCTTGGATTTTGTTGTATTTCTG
AAAAGCTATGAGAAGAAATGATTGATTTGCGCTTAATTACTGTAGTGGGGGAAGGGATATTCAGAATTTGTGGTCATCTT
TGTAAAACAACATCAGGGATAATTAATGTGAAAAGGGGATATGAATGGTTGTGGGTTCGGCCGGGGAGGCGACGGCGGCG
GCAAGAAGCGCCGCATCGTCAGATAGCAGTGACTGCCGGAAGAATACTGTTGTGATGATTATATACATATATATGTATTC
CAGTTCGTTGCTTAGTTAGTATTAATTTCTTATCACTTCCTTTTTCTTGTAGTCAAGTTCTGAAACCATGCTTTGATGAT
AACTTCATCCGT-ATACTCTGCCGCTGGTTTCAAGTCATGAGCAGATGGAAATCATCAGTGCATCATCTCTTACACAACT
GCTACTGCAATTGACTCCTTTGCAAGCACTGGTAAGATCTTTCTACACAGCTTAGCTACATCTCTCTTCTTAAATTTACC
AGGATTTTTTT-GTTGCTTTTCCTCTAATAAGATGCATCATACTTACTGTTGAATAGTTTATCAA--ATATATATTCTTG
CTGCACATTCTGTATCAACTGATAACTTTGAAACTTTTCTTCTCTCATTAGATCATGCTTACTATT
>chr7B_1
AGACAAAGCTAATACAATCTACTTCTACATTTTTGTTTCATGAAATGACTACACAATGATATAGAAGATAGTGTGTGTAC
AAAAATAATCATAACGTCAATGTGTCCGTAACATTAGGAAAGTCAATTTAGTACCTGGTATATGAGGCCCAGTATATGAT
CCTTCCACGCAAGACAAATTGATGCGTGTGATTCTTCTCTTTCTGTATAATCATATAGTTCATGGCCGAGAGTGGTCATC
TTAGTGCATGATGTTCTGCATACACCGCAATGCCAAAGTAGCATTGTTGTGGGATAATAGCCATGGAACTAGCAGTAAAA
GGTGAATTATCATGATCCACGACAATGCCAAACGCAGCATTAAAAGGGTTACAGTCTGATTTTTGAGTTATTTTTAATAA
GCTCTTAATATAGTTGACAAAATTCATTGTGTTGTTGAAATTGCCTTTTAAATGTTGTCTGGAATCTGCACTTTCCCGCA
ATGCCACAACGGACTGCTCAAGTGGCAAGAAAAATACCTT-TGAACTTTTCGAGGATGTTTTCAATGATCTACTAATATC
TGAAATTCAGGCAATCTCACTAAGATTATTCATATGTTCTTTATTTGCCTTCTCCCTAACAACAGATAGTTTATTTCTAC
TAGTTTAGACAATTGGCAGTCATCGACATTTCCTGCAGCTAAGGTCCTTTTTGTCACCTTTT-AGATGTACCTTTTTATA
CACAAAAACCTTTCTTGTTTCACTGAATCCAGGCAAGACTTGAGAGTTTACTTTTTGCACTGAATCCAAGCAAGACTTGA
GATTTTAGGGTTACTTGTTTGCAACATTTAAAAATTCAGCTTCTCAATATTAGATGAGAACTTAGCATACCTTCAGTTAA
GATCCATGTGTACTTTCTCCAACATTTAAGAATTCAG-TCACATCCCTTTGTATTAAATTTATCCAAAGGTGTAGCATCA
TTATGTGCTTGTACTGATTTAAAATGTTCCCTATTTTTTTGACATACCACGGATGAAGGATCATCATCCGCCTGCATCCC
CATTAGGATCAGGGGAACGTTCCCCGTTTAAAGATCTGACAAATACGCCTACTCATGTGAATGCAAATCAAGCGGGTGAA
AAATTGCAAGAACAAACACCAAAAAGTGGTCAAAATTGGTTTGCACGAATGACCGATGAGAAGAGAGCGGAATACAACAA
GAAGCGATGTATTGCCCGAGCACGAAGACACCTTCTCCACTACGGTCTACTCACAGCGCCTACGGTTCAGAGGTAATGTT
ACACCGGACCCTGTTATGGGTCTTTCATCATTCGATCACTAAAATTGCTTTTGTTCACTTTATTATACGACAAATGCATG
TTCACTGAAAGTACTCCTGTGAAGGTACTTTGTCCATTTATGGTGTGTCGATGTCAAAATTCGGTACTCTGATTAGAGTG
ACCTTATTTCCATATGCAGTTGTAGATTTCAGTGTG--ACATAGTTCCAGAGTGTACTTTGCATGATTTGTTCAAAATCT
GCATGTTTATTTCCATCTGCTTTGAAGGCTGCATATTCTACTAACTTCCTATGTAGAAGCATGCTCATAGGAAGGTAAAT
AGGATTCTTGAGTTCGTCTTTTGTTTTTGTTGACTGTAATGTTAAAGCAGAACGATTGATGCTGCTGCAGTTCATCTACA
TTGATTCTTGATTTACCCTTCTTATTACCATTTGCTAACTTAACCACCTCTCTCTCTCTCTCTCATGTTGTTTCTGAAGA
TGTTTTATGTGTCATGTCGACAAGGGTGTTTGACGGGAAATCTAGGAAGGCTGCATATGAGGTGAATCAAGGTAATATAT
ATGACATAGTGAAGGATAAACTCCTCTCCCTCATGTTGTTTCTGGATATGTTATT---C-GTCGTGTAAGAAAGCTAAGA
TTTATTTTGGCCACGTGATTTCCGTAAACATATACTGGAAATATTTCATACAAAGTTTCCCTCATATCAAACTATTGTTT
TTCTTCTAACAGGAAGTTGGTAGAATATGCAGCCTTCAAAGCAGATGTTTGTGAATTTTATGCCAGGTGAGCCTCTTTCA
TTTTAATGCTTGAGTGCTTTTCTCTGAACTTTTAAGTCCTAATGGTGGCGGCGGTAGGAACCCAGCCCCTTCTCCCTTGC
CTGCTCCAGCAATGATGGAGGCGAAGAGGAGGAGCGCCAATAAGATAGGTCGCTATGAGCGTGTGAGGAGAAGTGGTAAC
GCTCTGCGCCCTCTGCTGGGGCGGCAGCGCCACCGTTGCCACGTGCCTCGGCTTCTCCATCGGATGGAAGGTTACATCAC
CCCCCTTCTGCCACTCTTGTGTTCTTTGGTGATTTCTATGTATTCAATATTAACCGTTCTCGGATTTTGTTGTATTTCTA
AAAAGTTATGAGAAGAAATAATTGATTTGCGCTTAATTACTGTAGTGGGGGAAGGGATATTCAGAATTTGTGGTCATCTT
TGTAGAACAACATCAGGGATAATTAATGTGAAAAGGGGATATGAATGGTTGTGGGTTCGGCCGGGGAGGCGGCGGCGGCG
GGAAGAAGCGGCGCATCGTCAGATAGCAATGACTACAGGAAGAATACTGTTGCTC-------------------------
-------------AGTTAGTATGGATTTCTTATCACTTCCTTTTTCTTGTAGTCAAGTTATGAAACCATGCTTTGATGAT
AACTTCATCCGTAATACTCTGCCGCTGGTTTCAAGTCATGAGCAGATGGAGATCATCAGTGCATCATCTCTTACGCAACT
GCTACTGTAATCGAGTCCTTTGCAAGCGCTGGTAAGATCTTTCTACACAGCTTAGTTACATCTCTCTTCTTAAATTTACC
AGGATTTTTTTAGTTGCTTTTCCTCTAATAAGATGCATCATACTTACTGTTGAATAGTTTATCAAATATATATATTCTTG
CTGCACATTTTGTATCAACTGATAACTTTGAAACTTTTCTTCTCTCATTAGATCATCCTTACTATT
>chr3A_120
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---------------------------------------AAGACAATTCTGTACTTCATATATGAGGCCAAGTATATGAT
CCTTCCACACAGGAG-AATTGATGCTTGTGATTCTTTTCTTTCTGTATCGTCCTACAGTTCATGACCGAGAGTGGTTGTT
TTAGTGCATGATGTTCTGCATACACCCCAATGCAAAACTAGCATTGTTGTGGGATAATAGCCATGGAACTAGCGGTAAAA
GGTGAATTATCATTATCCACCGCAATGCCAAACGCAGCATTAAAAAGTTCAGAACAGATAGT------------------
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----------------------------TTCATATGTTCTTTTTTTGCCTTCTCCCTAACAACAGATAGTTCATTTCTAC
AGGTTCAGAACATTGGCAGGCATCAGCATTTGCTACAGCTAA-GTCCTTTTTGTCACCTTTT-AGATGTAC-TTTTTATA
GGCAAAAACCTTACTTGTTT-------------------------------------CACTGAATCCAAGCAAGACTTGA
GATTTTAGGGTTACTTGTTTGCAACATTTAAGAATTCAGCTTTTCAATATTAGAT---------GCATACCTTCATTTAA
GATCCCTATGTAGTTTCTCCAACATTTAAGGATTCAGTTCACATCCCTTCGTATTAAATTTATC-AAGGGTGTAGCATCA
TTTTGTGCTTGTACTGACTTAAGAT-------------------------------------------------------
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>SNPs
------------------------S-------------------------------------------------------
--------------S-----------------------------------------------------------------
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--------------------------------------------------------S-----------------------
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---------------------------------------------------------------S----------------
------S-------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
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----------------------------------------------------------------S-------------S-
S-------------------------------------------------------------------------------
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-------------------------------------S------------------------------------------
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------------------------------------------------------S-------------------------
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-------------------------------------------------------------------S------------
-------------------------------------S---S--------------------------------------
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---S----------------------------------------------S-----------------------------
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---------------------------S-----------------------------S-------S--------------
-------------S------------------------------------------------------------------
----------------S-----------------------------------S--------------------S------
--------------------------------S----------S------------------------------------
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------------------------------------------------------------------------S-------
-----------------------S--------------------------S--------------------------S--
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----S---------S--S-----------------------------------------S--------------------
------------SS---------------------------------------------S-----S--------------
---------------------------------------S-------------------------S--------------
-------------------------------------------------------------------------------S
----------------------------------------------S-S-------------S-----------------
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>forward_487
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-------------------------------------------------------------------GCACTTTCCCGCA
ATACCAT-------------------------------------------------------------------------
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>reverse_2113
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--------------------------------GAAGTCCTAATAGTGGCGGC----------------------------
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