>input_sequence_63424
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---------------------------------------------------------ATGGGCAGCAGGCTTGACGCGCA
CACGCTCAAGGACGAGGTGGCGAGCATGGACCGCCGCCCGCTCCTCGACCTCGGCCACCCGCTCCTCAACCGCGTCGCCG
ACAGCTTCATCCGCGCCGCCGGAGTACGCGCCCTTTTTTTGATCTCCACCCACCGTGCACGCGTGCTCTGCTCCATCGTT
TCTCTCCTGCTCCGTCGTGCGATAA---CTGATCTGACTGCTCCGGGCTGGTATGATGGCAGGTCGGAGCGGCGAGGGCG
GTGTCGCGGGAGGCCTACTTCGTCGCAGTCGAAGGGATGTGGGGAGACTCGACGGGGCTGGACAGCACCGCCAAGAGGAG
CCATTTCTCCAGCGCCAGAGGTGATACCTCTTTCCT---GGACAGTACTACCTCTTTTCTCTCTGTTTTCGTTAAGCCCG
AGCTGATGAACTCGACTCTCCACAGGGGATGACGGCCAGAAGTCGCTCGACGCAGTGGTAAGCG----------------
-AGGCTCAAATCATCTGTTTCGACAGCTAGTTCTTCTCCCTCTGACCACTAGCTCGCACCTTGGTTTGCAGGTTAAATCG
GCAAGCAAGGAGGCCATCCAGTGGGGTCAGTATTCATTTCAGCGTT--------AACTAATTATTGTAGCTCAAAAAT--
---CATTTTAGCACAGCTTGTAATATGTATTGTTCTTATGGCAGGATTGGCAGCCGGAGTCTACTCTGGGATAACGTACG
GTCTGAGAGAGGCAAGAGGACACCATGACTGGGTTGGTTTCTCGATCTCC-AGACTAATTTTCTACTTGCTGTTTCAGAT
CAGCTAGGTTCAGAATTAACTGGCTGCTTAACTAACTTGTGTTTGTTGACCTGATGCTGCTGCTGCTGCAGAAGAACAGC
GCGATAGCAGGGGCGATTGCGGGAGCGGCAGTCGCGCTGACCGGGGACAACGGGCACTCCGACCACGTCGTCCATTTCGC
CATCACCGGAGCCGCACTGTCGAGCGCGGCGACCATGCTCTCCGGCATATTCTAA-------------------------
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>chr5B_1_TraesCS5B01G046000
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGATCATGGGGAGAAAAACAGATCGATAGCGGCGGCGAGGAAAGAAGAAC
GAGCGAGGAAGAGGATATGCTGATCTGGCCCGGGATTGATTACCATACGTGAATTTATTGCGTGATGTGTTACCAAAGAT
AAGATTGATTACCGCAAGTGAATTGATTCTGTTACCAAAAGATTACTATACGTGAATTTATTGCGTGATGTGTTACCAAA
GAAGAGATTGATTACCACAGGGTGAATTGATTGTGTTACCAAAAGGTTTGGTTTTCCGATCAGAAGAAAATTATTGTAAA
TAAAAAACCGGGGAGGAAACCAGTGGAGCGGGAGGTAATCGGTGGAGAGGTGGGATATCGTAAGGGATGACGAAGGGTGG
GACGACGTAATACGGGAGAGGGAACCTTAAGTTTTTTTAAGGTAGTAGAGAAAATATTGTTGAAATCCAAGAACATTTTT
AAATTCCTAAACATCTTTTAATGATCCCAGGGTTTTTTGGAAATTTGAAACATTTTTAGGAAAACGTTAGAATAAACAAA
ATAAAATGTGACACGAAGAAAGCCTCTCGCGAGAATTCGGCTTGCCCACTGACACTCACTTCAGGCGTCGCTGCACAGCA
CTGGTCGACGCCAAACAGGATGCCTCGTAGTTTGCCTCGGAGGTCCCTTG----------GTGTGGTGACCCCCTCTGCT
CGGCCCAACGTTGTCCTGCCACGCGCCCCTCAACCTCCAAGCGCATGGAGAACCTTCAGGAACACTCTGCCGCCTGCGCC
ATGGGCGCGCACAGCCCGCCACGAGGAGCGGCACGGACACGTTGCCGCGCGGCACCCCACACGTGTACCCACGCGCGCCT
CCCCCGCTCCGTTCATAAAACCGAGGCCCTCGGCTCCACCGCTCGGCACTTCTCTATCGTATCGCC-------AGTCCAG
CACGCAGTCCACAGCAAGCGAGCAAAGAGAAGAGAGAAGACCAGCTGCGAGGAGGAGATGGGCAGCAGGCTTGACGCGCA
CACGCTCAAGGACGAGGTGGCGAGCATGGACCGCCGCCCGCTCCTCGACCTCGGCCACCCGCTCCTCAACCGCGTCGCCG
ACAGCTTCATCCGCGCCGCCGGAGTACGCGCCCTTTTTTTGATCTCCACCCACCGTGCACGCGTGCTCTGCTCCATCGTT
TCTCTCCTGCTCCGTCGTGCGATAA---CTGATCTGACTGCTCCGGGCTGGTATGATGGCAGGTCGGAGCGGCGAGGGCG
GTGTCGCGGGAGGCCTACTTCGTCGCAGTCGAAGGGATGTGGGGAGACTCGACGGGGCTGGACAGCACCGCCAAGAGGAG
CCATTTCTCCAGCGCCAGAGGTGATACCTCTTTCCT---GGACAGTACTACCTCTTTTCTCTCTGTTTTCGTTAAGCCCG
AGCTGATGAACTCGACTCTCCACAGGGGATGACGGCCAGAAGTCGCTCGACGCAGTGGTAAGCG----------------
-AGGCTCAAATCATCTGTTTCGACAGCTAGTTCTTCTCCCTCTGACCACTAGCTCGCACCTTGGTTTGCAGGTTAAATCG
GCAAGCAAGGAGGCCATCCAGTGGGGTCAGTATTCATTTCAGCGTT--------AACTAATTATTGTAGCTCAAAAAT--
---CATTTTAGCACAGCTTGTAATATGTATTGTTCTTATGGCAGGATTGGCAGCCGGAGTCTACTCTGGGATAACGTACG
GTCTGAGAGAGGCAAGAGGACACCATGACTGGGTTGGTTTCTCGATCTCC-AGACTAATTTTCTACTTGCTGTTTCAGAT
CAGCTAGGTTCAGAATTAACTGGCTGCTTAACTAACTTGTGTTTGTTGACCTGATGCTGCTGCTGCTGCAGAAGAACAGC
GCGATAGCAGGGGCGATTGCGGGAGCGGCAGTCGCGCTGACCGGGGACAACGGGCACTCCGACCACGTCGTCCATTTCGC
CATCACCGGAGCCGCACTGTCGAGCGCGGCGACCATGCTCTCCGGCATATTCTAAGCGGCGGAACGTGGGGCTAGGGCTA
TGAAATTTGGAGCAACTCTTGAAATGTGGTACTGTATTTCCCTTAATTTCTCCATGTACCTTTGACAGTTTGTGCACTCT
GTCCCATCTGCTAGCTAGCCCTGGAACCAAGCAAGTCCGAATTTCGTTAGAATTTCTGCTGTAATGTTTGCTCCTTTTGT
TCTATATGTTCTATTCGTGGCACTATGCTCACGAGTTTGAGACCTCGAATCCTCTATGACCACATGGATGTCTAGATGAG
GATAAGAGTTGCCGGAGTAATGTTCTGCCGGGAGATGCAATGTTGTGTCTGAGAAGCCTGCATGAGCAAGGGCACACTAT
GTTGTAGCAGAG---TTATGCAATTTTTGTTTCCGGTGGTTAAACCTGAACATGCAGTGCCTCTTCAGGCCCAAAAATCT
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---------------------ATCTTCAACGGATAATGTAGAACTAACTAACATGTACATCTCCAAAAACCAAAAACCCA
TCACAACAGATAATGTAAAACTAATGTAAAACCCATCTCCGATAGATAATGTATAGATGCATAACAGTGTTCAAAAAAAA
TGTAAAAAAAATGTATAGGTGCATAACCCGATAATGTAGATGCATAAAACATCTTCAAGAGGTCCAAAACCCATCTTCAA
CAGATAATGTAAAACCCACCTATCTCCAATCTC----------------------------------------CAACAGA
TAATGACGATACATAACCCATCTTCAACAGATAAAACCCAACTGATAATGTAGATGCAAACCTTCTTACATCTTTACATC
TCCATGATGGAGGATGCAAACCTTTCTACATCTTTACGGTTCAAAGCTAACAAATAGATCTCATGTTGGCACTCAATGGC
TAAGATCTCCATGATGGAGGATATAAAACACAACACCTGGGGATGCAAATATCCATTTACGGGAGATGTAAAATCGGCGG
TCGCGTGTCAATTGCAATTGCCTAATTGTGTTCATTTGGCCGCCCGTTGACGGCCATGCCGTCGCCGATGACTGTTGAC
>chr5A_639
CACTGGTCT-----------------------------------------------------------------------
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------GACGCCAAACAGGAGGTCTCGTAGTTTGCCTCAGGGAAAAGGAGGTCTCTCGTAGTGCGGTGACCCCCTCAGCT
CGGCCCAACGTTCTCCTGCCACGCGCCCCTCTACCTCGTAGCGCATGGAGAATCTTCCCGAACGCTCTGCCGCCTGCGCC
ATGGGCGCGCACAGCCCGCCACGAGGAGCGGCACGGACACGTCGCCGCGCGGCGCCCCACGCGTGTACCCGCGCGCGCCT
CCCCGGCCCCGTTCATAAAACCGAGGCCGTCGACTCCACCGCTCGGCACCTCTCTATCGCATCGCC-------AGTGCAG
CACGCAGTCCATAGCAAGC-----AAGAGAAGAGAGAAGACCGGCTGTGAGGGAGAGATGGGCAGCAGGCTTGACGCGCG
CACGCTCAAGGACGAGGTGGCGAGCATGGACCGGCGCCCGCTCCTCGACCTCGGCCACCCGCTGCTCAACCGCGTCGCCG
ACAGCTTCATCCGCGCCGCCGGAGTACGTGCCTTTTTTT----CTCCAACCACCGTACACGCGTGCTCTGCTCCATCGTT
TTTCTCCTGCTCGTCTCGTGTTTAA---CCGATCTGACTGCTCCGGGCTGGTATGATGGCAGGTCGGAGCGGCGAGGGCT
GTGTCGCGGGAGGCATACTTCGTCGCCGTCGAAGGGATGGGAGGAGACTCGACGGGGCTGGACAGCACCGCCAAGAGGAG
CCATTTCTCGAGCGCCAGAGGTAATACCTCTTTTCTCCTGGACAG---TACCTCTTTTCTCTCTGTTTCCGTTAAGCCTG
AGCTGATGAACTCGACTCTCCACAGGGGATGACGGCCAGAAGTCGCTCGATGCAGTGGTAAGCTGCAAGGCTTGCTTTTC
AAGGCTCAAATTATCTGTTTCGATAGCTGGTTCTTCTCCCTCTGACCACTAGCTCGCACCTTGATTTGCAGGTTAAATCG
GCAAGCAAGGAGGCCATCCAGTGGGGTTAGTATTCATTTTGGCACCAAGCCACCAACTAACTATTTTAGCTCGGAACATA
TTCTTTTATAGCACACCTTATAATATGTATCGTTCTTCCGGTAGGATTGGCAGCCGGAGTCTACTCTGGGATAACGTACG
GCCTGAGAGAGGCCAGAGGACACCATGACTGGGTTGGTTTCTCGATCTCC-AAATTATTTTTCTACCTGCTGTTTCAGAT
CAGCTTT----AGAATTAACTGGCTGCTTAACTAACTTGTGCTTGTTAACCTGA---TGGTGCTGCTGCAGAAGAACAGC
GCGATAGCAGGGGCGATCGCCGGAGCGGCAGTCGCCCTGACCGGGGACAACGGGCACTCCGACCACGTCGTTCATTTCGC
CATCACCGGAGCCGCACTGTCGAGCGCGGCGACCATGCTCTCCGGCATATTCTAAGCAGCGGAACGTGGGGCGAGGGCTA
AGAAATTTGGAGCAACACTTGAAACGTAGTACTGTATTTCCCTTAATTTCTCCATGTACCTTTGACAGTTTGTGCGCTCT
GTCCCATCTGCTAGCTAGTCCTGCCACCAAGCAAGTCCGAATTTCGTTAGAATTTCTCATGTAATGTTTGTTCCCTTTGC
TCTATGTGTTCTATTTATGGCACTATGCTCACGAGTTTGAGACCTCGAATCCTCTATGACCGTATGGATGTCTAGATGAG
GATA-GAGTTGCTGGAGTAGTGTTCTGCCGTGAGATGCAATGTTGTGTCTGAGAAGCCTGCATGAGCAAGGGCACGCTAT
GTTGCGGAGCAGAGTTTATGCAATTTTTGTTTCCGGAGGTTAAACGTGAACAGGTGGTGCCTCTTCTGGCCCAAAAACCC
ACACTATGTTGCGTAGCAGAGTTTATGCAATTTTTGTTTCCGGAGGTTAAGCGTGAACATAGTGTGGAGTTTATGCAATT
TTTGTTTCAGGCCCAAAATTCATCTTCAACCGATAATGTAGAACTAACT----TGCACTTCTCCAAGACCAAAAAACCAA
TCTTCAACAGA----------TAATGTAAAACCCATCTTCAACAGATAATGTAAATGCGT--------------------
-------------------------------------------------------------------AACCCATCTTCAA
CAGATAATGTAAAACATACATGCACCCAATGTAAAACCCATCTTGATCATGCACCCAATGTAAAATCCATCTTCAACAGA
TAATGTAGATGTGTAACCCATCTTCAACAGATAATGTAAAAC--------------------------------------
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>chr5D_696
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-----------------------------------------------------------------GTGACCCCCTCGCCT
CGGCCCAACGTTCTGCTGCCACGCGCCCCTCTACCTCCAAGCGCATGGAGAACCTTCAGGAACACTCTGCCGCCTGCCCC
ATGGGCGCGCACAGCCCGCCACGAGGAGCGGCACGGACACGTTGCCGCGCGGCACCCCACACGTGTACCCACGCGCGCCT
CCCCCGCTCCGTTCATAAAACCGAGGCCCTCGGCTCCACCGCTCGGCACTTCTCTATCGTATCGCAGACTCGTAGTCCAG
TACGCAGTACATAGCAAGC-----AAGAGAAGAGAGCAGACCAGCTACGTGGGAGAGATGGGCAGCAGGCTTGACGCGCG
CACGCTCAAGGACGAGGTGGCGAGCATGGACCGGCGCCCGCTCCTCGACCTCGGCCACCCGCTCCTCAACCGCGTCGCCG
ACAGCTTCATCCGCGCCGCCGGAGTACGTGCCTTTTTTT--ATCTCCACCCAACGTGCACGCATGCTCTGCTCCATTGTT
TGCGAATGAGCTCCGTGTTTTAGTTCATCTGATCTGACTGCTCCGGGCTGGTATGATGGCAGGTCGGAGCGGCGAGGGCG
GTGTCGCGGGAGGCCTACTTCGTCGCCGTCGAAGGGATGGGAGGAGACTCGACGGGGCTGGACAGCACCGCCAAGAGGAG
CCATTTCTCCAGCGCCAGAGGTGATACCTCTTTTCT---GGACAG---TAGCTCTTTTCTC--TGTTTACGTTGAGCCTG
AGCTGATGAAATCGACTCTCCACAGGGGATGACGGCCAGAAGTCGCTCGACGCAGTGGTAAGCTACCAGGCTTGCTTTTC
AAGGCTCAAATTATCTGTTCCGATAGCTAGTTCTTCTCCCTCTGACCACTAGCTCGCACCTTGATTTGCAGGTTAAATCG
GCAAGCAAGGAGGCCATTCAGTGGGGTTAGTATTCATTTCAGCGTT--------AACTAATTATTTCATCTCAAACAT--
---TTTTTTAGCACAGCTTCTAATATGTGTTGTTCTTCCGGCAGGATTGGCAGCCGGAGTGTACTCTGGGATAACGTACG
GTCTGAGAGAGGCCAGAGGACACCATGACTGGGTTGGTTTCTCGATCTTCTAAATTATTTTTCTGCTTGCTGTTTTAGAT
CAGCTAGCTTCGGAATTAACTGGCTGC-TAACTAACTTGTGCTTGTTAACCT-----TGATGCTGCTGCAGAAGAACAGT
GCGATAGCAGGGGCGATCGCCGGAGCGGCAGTCGCGCTGACCGGGGACAACGGGCACTCCGACCACGTCGTCCATTTCGC
CATCACCGGAGCCGCACTGTCGAGCGCGGCGACCATGCTCTCAGGCATATTCTAAGCCACGGGGTGTGGGGCTAGGGCTA
AGAAATTTGGAGCAACTCTTGAAATGTCGTACTGTATTTCCCTTAATTTCTCCATGTACCTTTGACAGTTTGTGCACTCT
GTCCCATCTGCTAGCTAGTCCTGGCACCAAGCAAGCCCGAATTTCGTTAGAATTTCGGCTGTAATGTTTGTTCCCTTTGC
TCTATGTGTTCTATTTATGGCACTATGCTCACGAGTTTGAGACCTCGAATCCTCTATGACCACATGGATGTCTAGATGAG
GATA-GAGTTGCTGGAGTAGTGTT--------------------------------------------------------
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>SNPs
S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------------S-S---------------S-S-SSSSSSS--------------S------------S---
------------S------------------S------------------------------------------------
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-----------S-------SSSSS----------------------------SS-------------------------S
---------------------------------S----------------------------------------------
----------------------------S---S------SS---------------------------------------
-S-----------SSS--SSS-----------------------------------------------------------
--------------------------S------------S-S--------------------------------------
---------------------------------S-----------SSS--------------------S---------S-
---------------------------------------------------------------S----------------
-----------S-----------S---------------------------------------S----------------
---------------------------S-------------------------------------S--------------
---SS--------------S-----------------SS-----------------------------------------
-------------S--------------------------------------S-S--S----------------------
-------S---------------------------------S-----S------SSS--S--------------------
-----------------S--S-----------------------------------------------------------
---------------------------------------------------------S----------------------
S--------------------------S----------------------------------------------------
------------------S-----S---------------------------------------------S---S----S
-----S---------SS---------------------------------------------------------------
----S-------S------S----------S--------------------------------------------S----
----SS-SSS--------------------------S--------S------S-SS----------S----------S-S
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------------------------------S------------------SSSS--S--S-------S-S-S-------S-
--SSS-SSSSSSSSSSSSSSS-----------------S-S-S----------S-SSS-SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
---------------SS--S-SSSS-----S-S-----------------------------------------------
-----SS---SSS---------------------SSSSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_629
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-------------------------------------------------TGACACTCACTTCAGGCGTC-----------
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>reverse_2257
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----------------GTGGCACTATGCTCACGAGT--------------------------------------------
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