>input_sequence_63421
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-------------------------------------------------ACGATCACACAGTATAGACCTTTAGACTTTC
GGGCCAGAGAGTGTAGGAGAGTCTACTTTGCACTTGGAGCGTGTGCAATCGACAGCGGCTGATCGACAGCAGCACGAACA
TGGGGAGGCCGTCTTCCACGGAGAAGCTGGTGTGCGTGGCCCTGGCGGCGCTGGCCGTGCTGTCGCCGCTGTACATGGAC
CGGGAGTTGGAGGCGGAGGAGGAGGAAGAGGAGGAGGGCTGGGGCCTGCTGCTGCCGTCCGCGCTGTGGCTGCCGGCGCT
GCTGGTGCTGCTCATCCTGGCTATCAACGTGGCGTGCTTCGTCGACCGGAGGGTCGTCAGGTTCGACCCCTACTGGATCC
ACCGCGTCGGGGGCTCCTCCTGCGGCCTCATGGCCACGCTGCTGCTGCTCGGCTTCGTCCTCAAGTGCAAGGCCTCCTTC
TAGTTCTAGGCTAGGCTCCCCGAGCGAGCCACCCGGCCTGCTGTGGCTATGGGTCGTCTCCGTCTCTCCATTTTCTTTCA
TTTTCAGATGATGATGAATCGATCGCATGGAGCAGCTCCTGTCTCATTAGCCAGTGCTCTTCTCTGCTCCTTTATTTTGA
CTGAATCGTGTTCTTGAGCGCACCGCTATGCAGTGTATAGTGTTTCTGGTGCTAGCAAAAGGAATTCAGTGATGTCCATG
GTTACGGAGAGGTTTGAGCTCTTTCTGACTGTCCATTTGTGCTGGATTTGTATATATTTTT-------------------
--------------------------------------------------------------------------TCATCA
TTAATTCCTCACTAAAACACATCGCAACTCGGTTTAGAAAAGAAAGAAAAAACAGTTCGAGCAAAGATAATATTTGGTCA
ACATGTTTAAGATTTGGTCACCTACAAATTGAAT-AGTTCTTGAAGTGTTTACGGTCTTGCTCAAACATTTCTCGGTAAC
CCGCCTGGTTTGATCCCTTTGTGGTTATGTTGGCTTTG-----TTTTTTAGTTTCGAGAAGAGGATTGTGCTGGATTTGT
CAATCCTACAACTTGATTTCTCCAATAAA---------------------------------------------------
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>chr4D_1_TraesCS4D01G291600
ATGGTCGGGGTGGGCGGCGCAGGGCCGACGCAGGCGGAGCCAGGGCTTCGGGGCAAGGCACACCGTGGCCGGAGACGTGC
TCTGCCGGGATGGGAGAAAAAAAATGAGCTACAGTGGACTACAGTTTTATTTACAGGGTCTCCTCTGTCCGGGACAATTT
CGCACTGTCAAATGGTTTACAGTGCCCTTTATACGTGTTTTTAAGGGTCAATTTTTAAGGCGTCTGCTAGAGATGCTCTA
AGTCATGAAACCTCTATCTATAAGTGGAACGACATGACTGGACGCCATCCATACTAGCGTCCAGACCTGGACGCTGTTAG
CAACAGAGTCCATCCTGGATGCTGTTATTTATGGCGTCCTTCCTATTTTTATAATTTTCACGGGCCGTGTACCAGTTTTG
GAATTATAGAATTATCATTTACTATTAATAAAAAAATCGGCTCCATGTACTAAGGATTTCTTGCCTCTTAACTGTAACTT
TATAATCCTAGAACAAAACACTTTTATCCTCGCAAAAACAAAGAAAAAAATAAAGCGAAATC----TTATACTTTAGCTT
ATGCTAAGAACACGTGTAAGAGGACTCATTGTGCCGTACAGGTACAGCAAAAAGTTGTAGAGCCACGTTGCTGCATGGGC
GCATGCAGCTTCAAGCACAAGCCCGGCCGGTTCGATCCTACGCGCGCGTCCGTAACCGCGCAATATTCGGGTTGTCGAGC
TCGAGCAGTTTGTCTCGGCATCCGATTCTCTTCCGTGCTCACCAGCTACGAAGGTGAAGAAAGAATCTCCCCTTTGCGGG
CGGCTTTACATCACCCTAC-----------------CGATCAGTGGATAATAATGCATAGATCTGAATATGTTCCTTT--
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------------------------------------------------------------------TTTACGTGGTAGGA
ATCGATCGATAGTCAAAAAGGATTTGCCGATCAAAAGCATAGATATCGGTAGGTGCTCGTGCGCTTGCTTCTCAAGATTG
GCCCAGCTAGCCAAACGCAGAATAAAAGAGAGAAATTCTGGAGAGCACCACGATCACACAGTATAGACCTTTAGACTTTC
GGGCCAGAGAGTGTAGGAGAGTCTACTTTGCACTTGGAGCGTGTGCAATCGACAGCGGCTGATCGACAGCAGCACGAACA
TGGGGAGGCCGTCTTCCACGGAGAAGCTGGTGTGCGTGGCCCTGGCGGCGCTGGCCGTGCTGTCGCCGCTGTACATGGAC
CGGGAGTTGGAGGCGGAGGAGGAGGAAGAGGAGGAGGGCTGGGGCCTGCTGCTGCCGTCCGCGCTGTGGCTGCCGGCGCT
GCTGGTGCTGCTCATCCTGGCTATCAACGTGGCGTGCTTCGTCGACCGGAGGGTCGTCAGGTTCGACCCCTACTGGATCC
ACCGCGTCGGGGGCTCCTCCTGCGGCCTCATGGCCACGCTGCTGCTGCTCGGCTTCGTCCTCAAGTGCAAGGCCTCCTTC
TAGTTCTAGGCTAGGCTCCCCGAGCGAGCCACCCGGCCTGCTGTGGCTATGGGTCGTCTCCGTCTCTCCATTTTCTTTCA
TTTTCAGATGATGATGAATCGATCGCATGGAGCAGCTCCTGTCTCATTAGCCAGTGCTCTTCTCTGCTCCTTTATTTTGA
CTGAATCGTGTTCTTGAGCGCACCGCTATGCAGTGTATAGTGTTTCTGGTGCTAGCAAAAGGAATTCAGTGATGTCCATG
GTTACGGAGAGGTTTGAGCTCTTTCTGACTGTCCATTTGTGCTGGATTTGTATATATTTTT-------------------
--------------------------------------------------------------------------TCATCA
TTAATTCCTCACTAAAACACATCGCAACTCGGTTTAGAAAAGAAAGAAAAAACAGTTCGAGCAAAGATAATATTTGGTCA
ACATGTTTAAGATTTGGTCACCTACAAATTGAAT-AGTTCTTGAAGTGTTTACGGTCTTGCTCAAACATTTCTCGGTAAC
CCGCCTGGTTTGATCCCTTTGTGGTTATGTTGGCTTTG-----TTTTTTAGTTTCGAGAAGAGGATTGTGCTGGATTTGT
CAATCCTACAACTTGATTTCTCCAATAAACTTCTACCTCTTTTATTGCTTTGATTTCGGATACATTTTTCATCGCTAATT
CAATACACAAAAACTTTCCAACCGAAAAGAATATCACCTTTTGATCTTGTGTAAGAAAGCATT---TTTTTCGAGAGAGG
CAAAAGAAAAGAAGTGGTTGTTTATATTAACAACTAAGAATCGATAATATCACACCAG----------------------
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----------------------------------------------------------------------------AATC
TCTTTGAACATTGGCACTCAATTGTGGGACCAATCACCAACCGCGAAATACAAACTATCATCCC----------------
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------------------TCCATAGCCTGTTCTAAAGCCCAAGATTAACACCATTTATCGATGTGTCATGTTTCTTATCG
GACAATGGGGTGACCGCACACCTAAACAAACTTT--ACGACGCTCGTGTGAGTCAGAAATTCCCAGGGGAACCGACTGAG
TTGGCCACACGATTGCTTCGTGATTCGTAAACTCGTATATGTGACTAGTATTTAGTTTATGTTCATGGGGTCCATGCATA
GCAGTTTTGGCCACTCCACCCATCCCAGCTCTCATGCATTTCTTTCCACTTTCAAATTTATATCTATTTATCTTCTGAAC
CGAAATTCCAGTTTATGCTTCATTTGCATATTCATGTTCCATGCGACGAGGACTTTCAAAT-AAGACCACTCTTGATTAT
AATTTGACAACATTTAAATTTTTACCAAGTTTCAAACAGTAAAACTTAATTGTCGTAATATTAAGTTTTTACCAACTTTC
ATCAACATTTACAAAGATCCATTTGCTTTTAGGTTTAGGTTCTAGGGCTTAGAGTTTAGGGCTTCGAGTTTAGAGTGCAG
GGTTTGATCCCTAAAAAACAGAGTGCAGGGTTTCATATTTAGTACTTGAAACTTGTTGAATTTATCCTTCGTTTTATCAA
GCTTTAATAGTTAAAACTTGGCGGGCTTAAGTTTTAGGGCTAAGGGTGCTGGTGCAGACTTTAGATTTTAGTATCCGAAA
CTTGTTGAAATTATTGTTCGTCTTTACCATATTTTAATAGTTGAAAC
>chr4B_438
CGGCCTT-------------------------------------------------------------------------
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-------------------------------------------CATGTAATGAGGATATTTGACTCTTG-ACTGTAACTC
TATAATTCTCGAATAAAACACTTTTATCCCGGC--AAAACAAACAAAAATGAGAGCCAAATCTTGA-TATAGTTTAGCTT
ATGCTAAGAACACGTGTAAGAGGACTCATCGTGCCGTACAGGTACAGCAAAAAGTTGTAGAGCCATGTTGCTGCATGGGC
GC----AGCTTCAAGCACAAGCCCGGCTGGTTCGATCCTACGCGCGCGTCCGTAACCGCGCAATATTCGGGTTGTCGAGC
TCGAGCAGCTTGTCTCGGCATCCGATTCCA-----TGCTCACCAGCTACGAAGGTGAAGAAAGAATCTCCCCTTT----G
CGGCTTTACATAACAGCCCAGTACCGCCCACACCAACGATCAGTGGATAATAATGCACAAATCTGAATATGTTCCTTTAT
ATGATACGCTCCAGTGGCAAGGAAGCGCAGTGGCGTCTCCAGCAACCAGGGTTCGAGCCACGTCGGGGACAAATTTCTGG
TTTCTCACAAGGAATGCTTCTCCTATATCAATAAACCATGGGTGCTAGTGCCCATGAGTTTCATCCTTTATATGATACGG
ATCGATCGATAGTCAAAAAGG-TTTGCTGATCAAAAGCATAGATATCGGTAGGTGCTCGTGTGCTTGCCTCTCAAGATTG
GTCC----AGCCAAACACAGAATAAAAGAGAGAAATTCTGGAGAGCACCACGATCACATGGTAAAGACCTTTAGACTTTC
GGGCCAGAGAGTGCAGGAGAGTCTACTTTGCACTTGGAGCGTGTGCAATCGACAGCGGCTGATCGACAGCATCACGAGCA
TGGGGAGGCCGTCTTCCACGGAGAAGCTGGTGTGCGTGGCCCTGGCGGCGCTGGCCGTGCTGTCGCCGCTGTACATGGAC
CGGGAGTTGGAGGCGGAGGAGGAGGAGGAGGAGGAGGGATGGGGCCTGTTGTTGCCGTCGGCGCTGTGGCTGCCGGCGCT
GCTGGTGGTGCTCATCCTGGCCATCAACGTGGCGTGCTTCGTCGACCGGAGGGTCGTCAGGTTCGACCCCTACTGGATCC
ACCGCGTCGGGGGCTCCTCCTGCGGCCTCATGGCCACGCTGCTGCTGCTCGGCTTCGTCCTCAAGTGCAAGGCCTCCTTC
TAG--------------------GCGAGCCACACGGCCTGCTGTGGCTGTGGGTGGTCTCCGT--CTCCATTTTCTTTCA
TCTCA----GATGATGAATCGATCTCAT--AGCAGCTCCTGTCTGATTGGCCAGTTCTC-T-TCTGCTCCTTTTATCTTA
CTGAATCATGTTCTTGAGCGCACCGCTATGCAGTGTATAGTGTTTCTGGTGCTTGCAAAAGGAATTCAGTAATGTGCATG
GTTACAAAGAGGTTTGAGCTCTTTCTGACTGTCCATTTGTGCTGGATTTGTATATATTTTTCTCTCTCCCGGCAATACAG
GCTTGTGCAGGCTTTGCCATGCTGCCTTCTGCATGCTTATATAATATAGTAGCTTTGATTTAGAACACAATATTTCATCA
TTAATTACTCACTAATACACATGGCAACTCGGTTT-----AGAAAGAAAAAACAGT----------------------CA
ACATGCTTAAGATCTGGTCACCTACAAATTGAATTAGTTCTTGAAGTGTTTACGGTCTAGTTCAAACATTTCTCGGTAAT
CCCCCTGATCTGAGCCCTTTTTGGTTATGCTGGCCTTATTTATTTATTTAGTTTCGAGAAGAGGATTATGCTGGATTTGT
CAGTTCTACAACTTGATTTCTCAAATAAACTTCTACCTGTTTTATTGCTTTGATTTCGGATACATTTTTCATCACTAATT
CACCACACAAAAACTTTCAAGCCAAAATGAATATCACCATTTGATCTTGTGTAAGAAAGTATATAATTTTCCCACATAGG
CAAAAG-AAAGAACTGCTTGGTTATATTAACAACTAAGAATCCACAAGACAATGTCACGCCGGAATCTCTTTGAACAAAA
TTAATCGGCTTACCACATGAGATTGCGGAGTTTAGCTTCGACGGTAGGTCCGATGGTGTTCTTCTAAATAGTTTTCCGCC
TATGTGGCATATTTTGTAACAAATGATTGTAATAACCTTTTTAGTTAATTGATATATGGTGTGTGTTTCAAAAAGAAATC
TCTTTGAACATTGGCACTCAGTTGTGGAG-------CCAGCCGCAAATAACAATCTACTCCCTTCGTCCGGAAATACTTG
TCCTAGATATAGATGTATCTAGACTTATTTTAGTTATAGATACATCCATTTTCTTCATTTCTGGGACAAGTATTTCCGGA
CGAAGGGAGTATCAATCTTCGATAGCATGTTCTAAAGCACAAGATTAGGACCACTTTAGG--------------------
-----TGGGGTGATCGCCCACCTAAACAAACTTTTTACGATGCTCATGAGAGTGGGAAATTCACAGGGGCGCCAACTCAG
TTGGCCACACAATTGCTTTGGGATTCGGAAACTCGTA-ATGTGATTAGTCTATAATTTTTGTTCGTGGGTG-CATGCATG
GCAGCTTTTCGGG-------CATCCCACCTCTAATGTATTTCTTTTTACTTTGAATTTAGATCTATTCTATCTTATGAAC
CAAAATTCCAATGTATATATCATTTGCATATTCGTGTTCCTTGCAACGAGGATTTTCAAAACAAGACCACTCTTGATTAC
AATTTTGCAAATTTTAAACTTTTACCAAGTTTCAAACAATAAAAATTGCTACTACTAATATTAAGTTTTTACCAACTTTC
ATCAATTTTTATCAAGATCCAATTGCTTTTAGGGTT------TAGGGCTTAGGGCTTAGAGCTTTGAGTTTAGGTTGCAG
GGTT----------------------------------------------------------------------------
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>chr4A_473
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------------------------------------------------------------------------TGTAACTC
TATAATCCTCGAATAAAACACTTTTATCCTTGC--AAAACAAACAAAAAAGAAAGCGAAGCCTTAATTATACTTTAGCTT
ATGCTAAGAACACGTGTAAGAGGACTCATCGTGCCGTACAGGTACAGCAAAAAGTTGTAGAGCCACGTTGCTGCATGGGC
GC----CACTTCAAGCACAAGCCCGGCCGGTTCGATCCTACGCGCGCGTCCGTAACGGCGCAATATTCGGATTGTCGAGC
TCGAGCAGCTTGTCTCGGCATCCGATTCTCTTCCGTGCTCACCAGCTACGAAGGTGAAGAAAGAATCTCCCCTTTGCGGG
CGGCTTTACATCACCCTAC-----------------CGATCAGTGGATAATAATGCACAGATCTGAATATGTTCCTTT--
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------------------------------------------------------------------TTTACATGATAGGA
ATCGATCGATAGTCAAAAAGG-TTTGCTGATCAAAAGCATAGATATCGGTAGGTGCTCGCGCGCTTGCTTCTCAAGATTG
GCCCAGCTAGCCAAACACAGAATAAAAGAGAGAAATTCTGGAGAGCACCACGATCACATAGGATAGACCTTTAGACTTTC
CGTCCAGAGAGTGTAGGAGAGTCTACTTTGCACTTGGAGCGTGTGCAATCGACGCCGGCTGATCGACAGAGCGGAG---A
TGGGGAGGCCGTCTTCGACGGCGAAGCTGGTGTGCGTGGCCCTGGCGGCGCTGGCCGTGCTGTCGCCGCTGTACATGGAC
CGGGACCTCGAGGCGGAGGAGGAGGAGGAGGAGGAGGGCTGGGGCCTACTGCTGCCGTCGGCGCTGTGGCTGCCGGCGCT
GCTGGTGGTGCTCATCCTGGCCATCAACGTGGCGTGCTTCGTGGACCGGAGGGTCGTCAGGTTCGACCCCTACTGGATCC
ACCGCGTCGGGGGCTCCTCCTGCGGCCTCATGGCCACGCTGCTGCTGCTCGGCTTCGTCCTCAAGTGCAAG---------
--------GGCTAGGCTCCCCGAGCGAGCCACCCGGCCTGCTGTGGCTGTGGGTCGTCTCCGTCTCTCCATTTTCTTTCA
TCTCA----GATGAGGAATCGATCTCAT--AGCAGCTCC--TCTGATTGGCCAGTTCTC-TCTCTGCTCCTTTATCTTGA
CTGAATCGTGTTCTTGAGCGCACCGCTATGCAGTGTATAGTGTTTCTGGTGCTAGCAAAAGGAATTCCGTAATGTCCATG
GTTACAAAGAGGTCTGAGCTCTCTCTGACTGTCCATTTGTG---------------------------------------
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>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-S-----S-S-SS-SSS-SS---------S
---------S---S----------------S--SS---SS--SS------S-----------------------------
-----------------------------S--------------------------------------------------
--SSSS--------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
---------------------------------------------------------S----------------------
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-----------------------------------------------------------------------S--S-----
---------------------S-----S----------------------------------------------------
----------------S-----------------------------------------S---------------------
-----------------------------------------------------------------------S-----S--
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--------------------------S--------------------------------S--------------------
-------S-------------S----------------------------------------------------------
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---SSSSS----------------------------------------S-------------------------------
-S-SSSSSS---------------S---SS--------------S---S------S---S--------------------
----------------------------------------------------------------------S---------
-----SS-------------------------------------------------------------------------
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------S--------S------S------------SSSSS----------------SSSSSSSSSSSSSSSSSSSSSS--
-----S-------S--------------------------------------------S-S------------------S
--S----S-S---S------S--------S----S--S-------S---------------------S------------
--S-S-----------------S---------------S----------------------------------S------
--SS--------------S-S--S---S----------S--------------------S--S-------S-S-S-S---
------S------S--S---S---------------------S-S--S-SS-SSS--S----------------------
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--------------------S------SSSSSSSSS---S----S--SS----S---SSSS-SS----------------
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--------------------S-----S-----------S--------SS----S--SSS-SSSSSSSSSSSSSSSSSSSS
SSSSS--------S---S----------------------S----S--S----SS-------S------SS--S---S--
----------S-------S-S------S---------S------S----S-S--S---S-----S----SSS-------S
----S---SSSSSSSSSSSS-------S----S---S--------SS-----S--S--SSSSSSSS-S------S-----
-S--------S-S---SSS--------------S------S---S-------S-------S------------------S
-----SS---SS------S-------------------S-----S--SS-SS-SS-------------------------
-----SS----SS--------S-----------S--SSSSSS----------S-S----S----S--------SS-----
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_151
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---------------------------------------------------TACAGGGTCTCCTCTGTCCG---------
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>reverse_1604
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---TTCTAGGCTAGGCTCCCCG----------------------------------------------------------
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>forward_284
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------------------------TGGAACGACATGACTGGACG------------------------------------
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>reverse_2670
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-----------------------------CCAATCACCAACCGCGAAAT-------------------------------
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