>input_sequence_63403
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----------------------------------------ATGGCTAAAGGCGGCAAGGCCAAAAAAGGCCCGGCGAGCG
GCGGTCAGCCACCGCCTCAGATAAGCCACCTTGTTCTGTTTCAAGGTGAGGCCTACGAGCTCCTGTCAAGCTACACAACA
ACGCATCCTGCCCGTGTGGACACCGACCAACCGGTCGGCCAGTCAGCAGTCCCCGCCAAGGAACCAGAGCAGCTCGGCCC
CTCGACGCGACGCCTCGTCTTTTCTCTGGCGGATGCTCTAGACGACCTGGTTAACTCCGCCATCTGCTTGGAGAAGCTCG
AGGACACTCGAGTCGCCGTTACGCCTGATGGCCGGATAAAGTTTGTCGAAGCCATTTTCGTGGAGAGAAAGGATCTGCCC
AGCCTAAGGGAGTTCAAGATCAGGGTGGCAGAGAATTACAACGACCTCGCCGGCATAATCACCCGCTACTTGTCTCCCGT
GTCGCACTGCATCCCGGCGGAGGTCACGCATCTGCTCTACTTGATGAGGAACAGAGCGTGGGAGATGAGGTATCTGATCA
CCTACCACTCTGCCACAGTGCCTCTGGGGAACCGGTCGGACCTCTTTCTCATAATGCATAGCTATGTGTGGGAGGTGCTG
AGAAAGACTGACCCTGGGGGGTATGAGTATGTCATGGCAAGTCTTGAGTATGATCCTGATTGGAGGAATGCGGTCGTTAA
TAACGAGCATTTGCAGAAGTACTACTATGCAGACGGAGGCGGGTTATATGAGAGCAATGCACAGCTGCAGGGA-------
-----------GACGAGCATCGCCAAGTGATGAGGTTCAATCATGATGGCCAGAGTCACCCTCTCGAGCATGCCGCCGAC
TCATCAGCACCAAGTGGGATGCTTTACAATCCGGTGCAATTGGGCCACATGTATCACGCCAACTTCGCACGGCTTACATA
CTCGATGCAAGCAGCCCTGCATGCCATTGATCGCCTCAGGTGTGTTGGGATCAAGTCTCTCTTCTCCAACGATTC-----
-AAAGGAGTATCAAGAGATACGGTAG------------------------------------------------------
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>chr6D_1_TraesCS6D01G207500
AGGGAAAAAATACGCGTTTTCTTTTTTTTTCTTTCGCGAGAATCACGGTTTTGCTTTTGTCAGAGGCACGGTTGTGCTTT
CGCGAGAGTCACGGGCGTGCCTCTTTCAGAAAGGGAAAAAAACGTGTTTTTTGTTTTTTTCTTTCCACGAGAGTCACGGT
TTTGCTTTCACGAGAGGCATGGTTGTGATTTCGCGAGAGGCACGGGCGTGCCTCTTTCGGAAAGGGAAAAAACTGTGCTC
CCGGTTTGGTTCTTTCGTCCGGTTTTTTCGTCCGGTTTTTTTCGTGAAAAAAAAGTTCGTCAAAACCTATCAACATGGTA
TCTAGTTTTGAAGATCTCGACGCGAGGAATCCAATGGTGAAAACGGTTTGAGATTTGGACGCACGGTTTAAGAGATAAAA
CGTTTTGAATAAACGAATCTACGGAAAAAGGGAAAACTCCCAGGTTGCGACAAGTGACGTGCTGCATGTGTTCTTTGCAA
TGAGTACTTCTTAATTAGTGATTTCGATCTTCTGTGGTAGTACAACTCTATTTATTTATTTATTTTTGAGAAACTCCTGT
TGTACAACTGGACTGGGCGCCTTCTCTCGTGGGCAAGCAAAAAGGCCCAAGCAACCAGAGAGCTCAGTTGGGCCGAGAAA
TTTAACGGGTGGTGGAGGTCGGAAAAAACAGGCAGATCTGACCCACAAATGCAGAGTTTCTAGCACGCAGATCGCGCCGA
TAGATCGTTCATACAGGATCTGAATCCGAGTAGAAGACTGCCTTCGCCCCGGAGAGGGATACTAATTTGGGATGTCCGAT
CCGGTTCCCAATCAGACTTCGCCCCGGAGAGAGAAACAGCCAATCGCCCAATCCCACTATATATTTCTGATCCGGTGGTG
CCTCTTCCGGATCCCCAAAAACACCCGGGGGGCGGCGTGAAGACAGTCGAAGGCCCCGGCCGGCGACGACGCGAAGGCCC
CGGCGGCGAGGCAAGGGCACAAGGCCCGGTTTCCAACTTGATGGCTAAAGGCGGCAAGGCCAAAAAAGGCCCGGCGAGCG
GCGGTCAGCCACCGCCTCAGATAAGCCACCTTGTTCTGTTTCAAGGTGAGGCCTACGAGCTCCTGTCAAGCTACACAACA
ACGCATCCTGCCCGTGTGGACACCGACCAACCGGTCGGCCAGTCAGCAGTCCCCGCCAAGGAACCAGAGCAGCTCGGCCC
CTCGACGCGACGCCTCGTCTTTTCTCTGGCGGATGCTCTAGACGACCTGGTTAACTCCGCCATCTGCTTGGAGAAGCTCG
AGGACACTCGAGTCGCCGTTACGCCTGATGGCCGGATAAAGTTTGTCGAAGCCATTTTCGTGGAGAGAAAGGATCTGCCC
AGCCTAAGGGAGTTCAAGATCAGGGTGGCAGAGAATTACAACGACCTCGCCGGCATAATCACCCGCTACTTGTCTCCCGT
GTCGCACTGCATCCCGGCGGAGGTCACGCATCTGCTCTACTTGATGAGGAACAGAGCGTGGGAGATGAGGTATCTGATCA
CCTACCACTCTGCCACAGTGCCTCTGGGGAACCGGTCGGACCTCTTTCTCATAATGCATAGCTATGTGTGGGAGGTGCTG
AGAAAGACTGACCCTGGGGGGTATGAGTATGTCATGGCAAGTCTTGAGTATGATCCTGATTGGAGGAATGCGGTCGTTAA
TAACGAGCATTTGCAGAAGTACTACTATGCAGACGGAGGCGGGTTATATGAGAGCAATGCACAGCTGCAGGGA-------
-----------GACGAGCATCGCCAAGTGATGAGGTTCAATCATGATGGCCAGAGTCACCCTCTCGAGCATGCCGCCGAC
TCATCAGCACCAAGTGGGATGCTTTACAATCCGGTGCAATTGGGCCACATGTATCACGCCAACTTCGCACGGCTTACATA
CTCGATGCAAGCAGCCCTGCATGCCATTGATCGCCTCAGGTGTGTTGGGATCAAGTCTCTCTTCTCCAACGATTC-----
-AAAGGAGTATCAAGAGATACGGTAGAGGGTGTTTTGCTGATGATGGATGTAGATGCTACATCGTCCGTA--GTAGCAAG
TAACTCTCACAATCTGTAAATGTTGTGATGCTTTTGGTTTTAGTTTGTTAATTGCTACTAGTACGGATGTTGGCGACTGT
CCTTTATTAACTAATTTGGTTGGCTTTTACTCTCGGAGTGCGTCCGTTTCTGCTGCCTTCAAATGCTTATTTAATCTTCT
AATGACGGGCTTGAATTGCTAGTTCTTTGGGTCTAAGAATGATGTGGGTTGATGGGT-----------------------
-------------ACATCTGATGAGCCTTAATGCGTTTGCTGGCGAATAATTTCCTTTTTCATATGGTTGGCCTTTAGTT
CAAACTCACTACAGAATAACAAGATGATCTGCTAACAGTTAAATCGAGAGATGAAGTCCCTCTGAAATGCCATGCTGGTT
ATCTCGACTCAACATTTCCAGGAATTACTTGATGACAGATGTTTTTTCCATGGTAATGTGAAT----ACAGATCAGGCTA
AAAACCAACCAACCAACTGATAATCTTGGCGGACATGACAAAATATTACTTAGTTAGTTAACAACTCTGCAAGACTGCAA
TGTTAGTACCCATTACAAAAGAACTAGTTAGTTTGGCTCAAAAAAAAAAACTAGTTACCAATTCCCCAGTCCACAGGGAC
AGTACCGGTGTCTATTTTTTTCGATAAAAGAAATATATTAATATCGTGAAGATATCAATTACACCTGGCGTCATGCACAC
AACCAAAAGAAGAAGAAGAAGCTAAAAAAAGAAAAGACCCGTTACAGAATTCCAGTCCATACAGTAACAGTACAACCACC
ACCAAAACAACACCTGAAGTCCAAGTTCTCCAAAAATGACGTCACCCCGAAGATAGTCCCCGCTCTCAAACCAATGCCTT
CAAAAAGACCGTTGCCAGGCACAACCAATTAAGGCCAGACCTTGGATTTTCACCCTAAGAGGTAAGACTTTGAACTGCAC
CTGTGCTGCCGCCCCCACTTACATACCG
>chr6A_858
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---------------------------------------------------------TATATATATCTGATCCG---GTG
CCTCTTCCGGATCCCAAAACACACCCGGCGGGCGGCGTGAAGACAGTCGAAGGCCCCGGCCAGCGGCGACGCCAAGTCCC
CGGCGGCGAGG--------CAAGGCCCGGTTTCCAACTAGATGGCTAAAGGCGGCAAGGCCAAAAAAGGCCCGGCGAGCG
GCGGTCAGCCACCGCGTCAGATCAGCCACCTTGTTCTGTTTCAAGGCGAGGCCTACGAGCTCCTGTCAAGCTACACAACA
ACGCATCCTGCCCGTGTAGACACCGACCAACCGGTCGGCCAGTCGGCAGTCCCCGCCAAGGAACCAGAGCAGCTCGGCCC
CTCGACACGCCGCCTCGTCTTTTCTCTGGCGGATGCTCTAGACGACCTGGTCAACTCCGCCATCTGCTTAGAGAAGCTCG
AGGACACTCAAGTCGCCGTCACGCCCGATGGCCGGATAAAGTTTGTCAACGCCGTTTTCGTGGAGAGAAAGGATCT----
-----AAGTGAGTTCAAGATCACGGTGGCAGAGAATTACAACGACCTCGCCGGCATAATCACCCGCTACTTGTCTCCCGT
GTCGCATTGCATCCCGGCGGAGGTCACGCATCTGCTCTACCTGATGAGGAACAGAGCGTGGGAGATGAGGTATCTGATCA
CCTACCACTCTGCCACAGTGCCTCTGGGGAACCGGTCGGACCTCTTTCTCATAATACATAGCTATGTGTGGGAGGTGCTC
AGGAAGACTGACCCTGGGGGGTATGAGTATGTCATGGCAAGTCTTGAGTATGATCCTGATTGGAGGAATGCGGTCGTTAA
CAACGAGCATCTGCAGAAGTACTA---TGCAGGCGGAGGCGCGTTGTATGAGAGCAATGCGCAGCTGCGGGGAAGCGTGC
GCGGCGCCATGGACGAGCATCGCCAAGTGATGAGGTTCAATCATGATGGCCAGAGTCACCCTCTCGAGCATGCCGCCGAC
TCATCAGCACCAAACGGGATGCGTTACAATCTGATGCAACTGGGCCACATGTATCACGCCAACTTCGCACGGCTTGCGTA
CTCGATGCAAGCAGCCCTGCATGCCATTGATCGCCTCAGGTGTGTTGGGATCAAGTCTCTCTTCTTCTCGAACAATTCAG
AAAAGGAGTATCAAGAGATACGGTAGAGGGTGTCGAGCTGATGATGGATGGAGGTGCTACATCGTTTCGTCTGTAGCAAG
TAACTCTCACAGTCTGTAA-TGTTGTGATGCTCTTGGTTTTAGTTTGTCAATTGCTACTGGTACGGATGTTGGCGACTGT
CCTTTATTAACTAATTTGGTTGGCTTTTACTCTCGGAGTGCGTCCATTTCTGCTGCCTTGAAATGCTTATTTAATCTTGT
AATGATGGGCTTGAATTGCTAGTTCTTTGGGTCTAAGAATGATGTGCGTTTCACCCGCAAAAAAAAAAAGAATGATGTGC
GTTGATGGTTGTGACGTCTGATTAGCCTTAATGCGTTTGCTGGCGAATAGTTTCCTTTTTCATATGGTTGGCTTTTAGTT
CAAACTCACTACAAAATGACAAGATGATCTGCTAACAGTCAAATCGAGAGATGAAGGTCCTCTGAAATGCCATGCTGGTT
ATCTGGACTCAATATTTCCAGGAATTACTTGACGACAGATATTTTTTCCATGGTTATGTGAATACAGACAGATCAGGCTA
AAAATCAACCAACCCACTGATAATCTTGGCGGACATGACAAAATATTA--------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S---------SSS---
---------------S---S--------S--------------------------------S---S------S---S---
-----------SSSSSSSS-------------------S-----------------------------------------
---------------S------S-----------------------S---------------------------------
-----------------S--------------------------S-----------------------------------
------S--S-----------------------------------------S-----------------S----------
---------S---------S-----S---------------------S-S---S----------------------SSSS
SSSSS---S-------------S---------------------------------------------------------
------S---------------------------------S---------------------------------------
-------------------------------------------------------S-----------------------S
--S-----------------------------------------------------------------------------
S---------S-------------SSS-----S--------S---S--------------S-------S-----------
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-------------SS-------S--------S-S-----S-----------------------------------S-S--
-----------------------------------------------------------------S-SSSS-SSS-----
---------------------------------SSS--------------S--S-----------SSSSS----------
-----------S-------S------------S---------------S----------S--------------------
---------------------------------------------S-------------S------------------S-
-----S----------------------------------------S---SSSSSSS-----------------------
---------------S------S--------------------------S----------------------S-------
-------------S---S---------------------S----------------SS----------------------
----S-------S-------------------S-------S-------------S-------------------------
----S---------S---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_709
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-------------------------------------------------TGCAGAGTTTCTAGCACGCA-----------
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>reverse_2140
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-----------------------------------------------------------AGTACGGATGTTGGCGACTG-
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