>input_sequence_63375
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--------------------------------------------------------------------ACCTGTGGCGAT
AGCACAC----TGCGCATTTTGTTGCCTACTTGGTTCATGTGTTGTTAGGCCAGGGCTTCATGGGCGAGTTCCGTGTAGG
CGGACGACGTCGAGGAGGTGAAGACGTTGTCCCCGGCGCCGCCGACGCCGAGTCGATGGTGGCCAGCTTGGATTCCGGCG
CGTCCAGCGGATCGCTGTGCTCGTCGATCATGTCGAGCCTGACAGACGACGACGACGACGCAGAGTCCTCCCTGGTGGCG
GGTGATCCTACGCCGTCGCC---GCCGTCGGACGCAATGCGGCTGGACGGGGGAGGCGGCGGGCCTCTCTACGAGCTGTC
GCCGCTGCTGGCGCACCTTCCCGTCAGGTGCGTGGACCGACGTCCAAAC-CCACAGCATACTTGTTCCCAACCCAACCAA
ATCAAAACTGACAAAATAA--ACAATTAACTTCTCACAGGACAGGGCTGTCAAAGTACTACAAAGGGAAGTCCCAGTCCT
TCACATCTCTTTCCGACGTCAAATGCTTGCAAGATCTCGCAAAGAAGACCACCGCCCACACCGGCAGGAAGGCGAGCCGT
TCGTCGATTTCGC---TTCACGTTCCAGGGCCTCGCAGCAAGACGATAACGAAGAAGA------CGGCGCCGAGGGGCTC
ATCGGGCCGGGAGCCGTCAAGAGCATGGAGCA----GGGGCTTTCCGCACAGAAGCGGTAAACCACCTGCGTACCAGAGC
AAGAAAGAGCTGTGCAGCAGAGATTTCTGCTAGCTAAAGAAAGGCAATGCAAGGTTTTGTAACATGGGGCGAGATAATGT
TTCTGCTAGCTAAAGGCACCGGAGGCAGAAAGAGTACCCCCA-GATTCCATGTCTTCGTCTGCCAGTAGAGATTTCTGCA
ACTGAAGTTCT---TGGGAGCATGTTTTGCTTCTATTTTCATCCGTGACCAATATTAGTGATAACTGCATATGCTCGGT-
----GATTCTGAGGACAACTTGCTGAGACTGTCCTGACAACACAAACCCATTATTG---------TAATAAA--------
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>chr7D_1_TraesCS7D01G365500
TGAGGTAGCGCTCAACTTTTTTATTTGACCGGCCCATTAGCAGGAGGTGTTCCCCAACTGGCGCATAAGGTTTCTCTCTC
AAAAAAAAAAACTGGCGCATAAGGTGTCTATGTGTTTGTCGCCCCAGCTTCTCGTGCTTTTTATAGAACACGGTACAAAC
GCAGGCGCTCATATATACGCACATGCACTTATCCCTATAAACAAATACATGGAGCCCTACCCCTATGAGCACTTTGGAAA
GACTGGGCCGACATACCATTTTTAGATTGACGAAGTCACCGTAGGAACGTCTCCTCTCACTGAACGCGTACCGTCAGAAA
TCCTGAAATAAATCCAGTATAATGTGAGCATCATGACTTAATCCTTATGGGATTGGGATACCACTGCCTCCTAACCATTC
AAACTTTCCATTTCTTAGCAGTTGATGGTGCTGAGATAAGACTTTCCATTTTTTGGCAGCTAATCGTGGCGAGAGAAGAC
TTTCCGAACTTGTACAGTGCCGATCACATCCACAATGGAGACGCACACGCATGCACAAGCCTTAATTATCCCCACGCGCA
CTCTTGGCACACCTAGCCTTTAAATGCAATGTTTATCCCTACCCTAATTA-----GCAATTAACCACTCCCATTTAATCA
GTTCAACTCCTACGCGCGCGTTATGTATGGGCGCTCCTTGATCCGACGGCCCACAGGAGCGTTGGCGACGAGCATCCATC
GATCCGACCGTCT----GTCGAGGAGCGATACGTGCCGAAACTCGGATTTGGATGACGACGATCGCCTTCCTTTTCCACC
TTCC---TCACCCATCCAGTCTGACCACCAGGGGTTC-----AGAATTCTGGCGTTGCGCCCACGGAAACCTTTAGTGCC
------ATGCATATCCCGCAATTCTCTCTCTGTCCGTTCTCCTTTCCATTTCCACCGCCGTTATCCATCCAGCCCATCAC
CCCCTGGCTCCTCGCGATCTTCTTGCACATATAAGCAGGACCAA-----GATGGCCTGCTCCTCTTCCACCTGTGGCGAT
AGCACAC----TGCGCATTTTGTTGCCTACTTGGTTCATGTGTTGTTAGGCCAGGGCTTCATGGGCGAGTTCCGTGTAGG
CGGACGACGTCGAGGAGGTGAAGACGTTGTCCCCGGCGCCGCCGACGCCGAGTCGATGGTGGCCAGCTTGGATTCCGGCG
CGTCCAGCGGATCGCTGTGCTCGTCGATCATGTCGAGCCTGACAGACGACGACGACGACGCAGAGTCCTCCCTGGTGGCG
GGTGATCCTACGCCGTCGCC---GCCGTCGGACGCAATGCGGCTGGACGGGGGAGGCGGCGGGCCTCTCTACGAGCTGTC
GCCGCTGCTGGCGCACCTTCCCGTCAGGTGCGTGGACCGACGTCCAAAC-CCACAGCATACTTGTTCCCAACCCAACCAA
ATCAAAACTGACAAAATAA--ACAATTAACTTCTCACAGGACAGGGCTGTCAAAGTACTACAAAGGGAAGTCCCAGTCCT
TCACATCTCTTTCCGACGTCAAATGCTTGCAAGATCTCGCAAAGAAGACCACCGCCCACACCGGCAGGAAGGCGAGCCGT
TCGTCGATTTCGC---TTCACGTTCCAGGGCCTCGCAGCAAGACGATAACGAAGAAGA------CGGCGCCGAGGGGCTC
ATCGGGCCGGGAGCCGTCAAGAGCATGGAGCA----GGGGCTTTCCGCACAGAAGCGGTAAACCACCTGCGTACCAGAGC
AAGAAAGAGCTGTGCAGCAGAGATTTCTGCTAGCTAAAGAAAGGCAATGCAAGGTTTTGTAACATGGGGCGAGATAATGT
TTCTGCTAGCTAAAGGCACCGGAGGCAGAAAGAGTACCCCCA-GATTCCATGTCTTCGTCTGCCAGTAGAGATTTCTGCA
ACTGAAGTTCT---TGGGAGCATGTTTTGCTTCTATTTTCATCCGTGACCAATATTAGTGATAACTGCATATGCTCGGT-
----GATTCTGAGGACAACTTGCTGAGACTGTCCTGACAACACAAACCCATTATTG---------TAATAAACAGAGTCT
-ATGTGACCCAGCACAATGCATATTCAGACATTTGGTTAGTTAGCAGTGTCTGAATATACAACGTTTGGCACTTTCAGTT
AGCAGTAATCAACAAAGCTTAATGTAGTCCAGCACAATGTGATGTT--TATTTAACTGAAATCTCATCTGTAGATCTCAG
TACAACTTGTGGTGCAATTTTTGAACTTGTATCACCAATCCTCTCGGGCACAACACACAAACCATGCACTTCTGAGCAAT
ATAT--CCATAGACATCAG-------TGGCAAATTCACTGGTACCCAACC-AGCGACTGACGTGAT--------------
------TGATTCAAGAATTCTTTACAAATTAAGGCCGCCAACTTAAACAACTTTGGGAGTGGGGCCATAAAAATGGTTGT
AGTGTTGTACAAGAAGAATA------GCTATTTTCTCCAGCGCCGCCAATAGA--ATCAACTGATGAAGTACATTGGATT
TGGAAGCTTAAAGGATCTCGTTGCCATTGGCAATCCTATCAGGTCACTCCATTGATCCCCAGAGTTTCCAAGTATCTTGA
ATCCTTCCGCTTCCATTGCAGCTCGCCTCTCTGATTTGTACTGCACAGCGGTCTTGCCAATATCAGAGATTTGCCTGCAG
CATGTGTATAC-------TTCCGATTAATACAAACTGGCTATGGTACA--------------AAATGGAGTAATTCTTTT
TAATGCC--TGTACTTTCCTTTTGTGTACAGTGAGAGCACAAGCACAAGTAAAAAATGGGAAAAGAAAACTTAGATAAAA
CTAGATGGTTACACTGTAGACTGTACGACCTCTCTTTTTCATAGCCGCAT------TATATGCAACTCAAAGTCGGAGAA
AGATGGTATACAGCCTAACTTCAAAATGATCCACTAACAATTCTAAATAATAAAAAAATCATTACAATGGCAATATAGAA
AATCAAAGTACAGCAGAGTTCTATGTTTGATAGAATTTTGGCAACACTCCTTACATTGAACATCATTCAACACATTGCTA
GAAGTTAAATTGTGACACAATT
>chr7B_173
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------------ATATACACACGTGCACTTATCCCTATAAACGAACACATGAAAACCTACCCCTACGAGCACTTTGAAAA
GACTGAGCCGATATACCATCTTTAGATTGACGAAGTCAGCATAGAAACGTCTCCTCTCACTGAATGCGTACTGCCGAAAA
TTCTGAAATAAATTCAGTACAGTGTGTGCATCAGGACTTAATCCTGATCGGCTTGGAATACCACTGCCTCCTAACCATCC
AAACTTTCCATTTCTTAGCAGTTGATCATGCTGAGATAAGACTTTCCATTTTTCGGCAGCTAA---------GAGAAGAC
TTTCCGAACTTGTACACTGCGGATCACATCCACGATCGAGACTCACACGCATGCACAAGCCTTAATTATCCCCACGCGCA
CTCTTGGCACACCTAGCCTTTAAATGCAATGTTTATCCCTA--------------GCAATTAACCACTCCCATTCAATCA
GTTCAACTCCCACGCGCGCGTTATGTATGGGCGCTCCTTGATCCGACGGCCCACAGGAGCGTTGGCAACGAGCATCCATC
GATCCGACCGTCT----GTCGAGGAGCGATACGTGCCGAAACTCGGATTTGGATGACGACGATCGCCTTCCTTTTCCACC
TTCC---TCACCCATCCAGTCTGACCACCAGGGGTTC-----AGAATTCTGGCGTTGCGCCCACGGAAACCTTTAGTGCC
------ATGCATATCCCGCAATTCTCTCTCTGTCCGTTCTCCTTTCCATTTCCACCGCCGTTATCCATCCAGCCCATCGC
CCCCTGGCTCCTCGCGATCTTCTTGCACATATAAGCAGGACCAA-----GATGGCCTGCTCCTCTTCCACCTGTGGCGAT
AGCACAC----TGCGCATTTCGTTGCCTGCTTGGTTCATGTGTTACTAGGCCAGGGCTTCATGGGCGAGTTCCGTGTAGG
CGGACGACGTCGAGGAGGTGAAGACGTTGTCCCCGGCGCCGCCGACGCCGAGTCGATGGGGGCCAGCTCGGATTCCGGCG
CGTCCAGCGGATCGCTGTGCTCGTCGATCATGTCGAGCCTGACAGA------CGACGACGCAGAGTCCTCCCCGGTGGCG
GGTGATCCTACGCCGTCGCC---GCCGTCGGACACGATGCAGCTGGACGGGGGAGGCGGCGGGCCTCTCTACGAGCTGTC
GCCGCTGCTGGCGCACCTTCCCGTCAGGTGCGTGGATCGACGTCCAAAAGCCACAGCATACTTGTTCCCAACCAAATCAA
-TCAAAACTGACAAAATAA--ACAATTCACTTCTCACAGGACAGGGCTGTCTAAGTATTACAAAGGGAAGTCCCAGTCAT
TCACTTCTCTTTCCGACGTCAAATGCTTGCAAGATCTCGCAAAGAAGACCACCGCCCACACCGGCAGGAAGGCGAGCCGT
TCGTCGATTTCAC---TTCACGTTCAAGGGCCTCACAGCAAGACGATAGGGAAGAAGA------CACCGCCCAGGGGTTC
ATCTGGCCGGCTGCCGTCAAGAGCATGGAGCA----GGGGCCTTCCGCACAGAAGCGGTAAACCGCCTGCGTACCAGAGC
AAGAAAGAGCTGTGCAGCAGAGATTTCTGCTAGCTAAA----GGCAATGCAAGGTTTTGTAACATGGGGCGAGATAATGT
TTCTGCTAGCTAAAGGCACCGGAGGAAGAAAGAGTACCCCCAAGATTCCATGTCTTCGTCTGCCAGTAGAGATTTCTGCA
ACTGAAGCTCT---TGGGAGCATGTTTTGCTTCTATTTTCATCCGTGACCAATATTAGTGATAACTGCATATGCTCGGTC
TAATGATTCCGAGGACAATTTGCTGAGACTGTACTGACAACACAAACCCATTATTG---------TAATAAACAGAGTCT
-ATGTGACCCAGCACAATGCATATTCAGACATTTGGTTAGTTAGCAATGCCTGAATACACAACGTTTGGCACTTTCAGCT
AGCAGTAATCAACAAAGCTTAATGTAGTCCAGCACAATGTGATGTT--TATTTAACTGAAATCTCATCTGTAGATCTCAG
TACAACTTGTGGTGCAATTTTTGAATTTGTATAACCAATCCTCTCAGGCACAACACAGAAACAATGCACTTCTGAGCAAT
ATAT--CCATAGACATTAGTGGCAACTGGCAAATTCATTGGTACCCAACC-AGCGACTGACGTGAT--------------
------TGATTCAAGAATTCTTTACAAATTAAGGCCGCCAACTTAAACAACTTTGAGAGTGGGGCCATAAAAATGGTTGT
AGTGTTGTACAAGAAGAATA------GCTATTTTCTCCAGCGCCGCCAATAAA--ATCAACTGATGAAGTACATTGGATT
TGGAAGCTTAAAGGACCTCGTTGCCATTGGCAATCCTATCAGGTCACTCCATTGATCCCCAGAGTTTCCAAGTATCTTGA
ATCCTTCCGCTTCCATTGCAGCTCGCCTCTCTGATTTGTACTGCACAGCGGTCTTGCCAATATCAGAGATTTGCCTGCAG
CATGTGTATACAGTATACTTCCGATTAATACAAACTGGCTATGGTACA--------------AAATGGAGTAATTATTTT
TAATGCC--TGCACTTTCCTTTTGTGTATAGTGAGAGCACAAGCACAAGTAAAAAATGGGAAAAGAAAACTTAGGTAAAA
CTAGATGGTTACACTGTAGACTGTACCACCTCTCTTTTTTATAGCCGCATTATATCTATATGCAACTCAAAGTCGGAGAA
AGATGGTTAACAGCCTAACTTCAAAATGATCCACTAACGATTCTAAATA---AAAAAATCACTACAATGGCAATATAGAA
AATCAAAGTACAGCAGAGTTCTATGTGTGATAGAATTTTGGCAACACTCCTTACATTGAACATCATTCAACACATTGCTA
GAAGTTAAATTGTGATACAATT
>chr7A_294
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-----------------------------------------------------CTCTCACTGAACGCGTACCGCCGAAAA
TTCTGAAATAAATCCACAACAATGCGAGTATCAAGACTTAATCCTGATGAGTGGGTG-----------TCCTAGCCATCA
AAACTTTCCATTTCT-------TGATCGTACTGAGATAAG-CTTTCCATTTTTCGGCAGCTAATCGTGGCGAGAGAAGAC
TTTCCGAACTTGCACACTGCCGATCACATCCACAATCGAGACGCACACGCATGCACA-----------------------
--------------AGCCTTTGAATGCAATGTTTATCCCTACCCTAATTACATTAGCAATTAACCACTCCCATTTAATCG
CTTCAACTCATACGCGCGCGTTATGTGTGGGCGCTCCTTGATCCGACGGCCCACAGAAGCGTGGGCCACGAGCATCCATC
GATCCGTCCGTCCGTCGGTCGAGGAGCGATAGGTGCCGAAACTCGGATTTGGATGAC---GATCGCCTTCCTTTTCCGCC
TTCCTCATCACCCATCCAGTCTGACCACCAGGGGGGTTGAGAAGAATTCTGGCGTTCCGCCCACGGAAACCTTTGGTGCC
ATGATGATGCATATCCCGCAATTCTCGCTCTGC------------CCATTTCCACCGCCGTTATCCATCCAGCCCATCGC
CCCCTGCCTCCTCGCGATCTTCTTGCACATATAAGCAGGACCAAACCAAGATGGCCTGCTCCTCTTCCACCTGTGGCGAT
ACCACACTGCATGCGCATTTCGTTGCCTGCTTGGTTCATGTGTTGTCAGGCCTAGGCTTCATGGGCGAGCTCCGTGTAGG
CGGACGGCGTAGAGAAGGTGAAGACACCGCCGGGGACGACTCGTTCTCCGAGTCGATGGCGGCGAGCTTGGATTCCGGCG
CGTCCAGCGGATCGCTGTGCTCGTCGATCATGTCGAGCCTGACAGA------CGACGACGCGGAGTCCTCCCCGGTGGCG
GGTGATCCTACGCCGTCGCCATCGCCGTCGGACGCGATGCGGCTGGACGGGGACGGCGGCGGGCCTCTCTACGAGCTGGC
GCCGCTGCTGGCGCACCTTCCCGTCAGGTGAGTGGATCGACGTCCAAAC-CCAGCATATTCCTTCTCAGTGAGCGA--AA
ATCAAAACTGATGACAAACTGACGATTCGCTTCTCACAGGACAGGGCTGTCCAAGTACTACAAAGGGAAGTCCCAGTCCT
TCACATCTCTGTCCGACGTCAAATGCTTGCAAGATCTCGCAAAGAAGACCACCGCCCACATCGGCAGGAAGGCGAGCCGC
TCGTCGACTTCACCGCTTCACGTTCAAGGGCCTCGCAGCAAGACGATAGGGAAGAAGAAGAAGGCACCGCCCAGGGGTTC
ATCTGGCCGGCTGCCGTCAAGAGCAGCATGGAGCAGGGGCCTTTTCGCACAGAAGCGGTAAACCACCTGCATACGAGAGC
AAGAAAGAGCTGTGCAGCAGAGATTGCAGCTAGCTAAA----GGCAATGCAAAGTTTTGCAAAATGGGGTGAGATAAGAT
TT---------------ACCAGAGACAGAAAGAATACCCC-----TTCCATGTCTTCGTTTGCCACTAGAGATCTCTGCA
ACAACTGAAGCTCCTGGGAGCAAGTTTTGCTTCTGTTTTCATCTGTGACCAATGTTATAAAACTG----TATGTTCTGTC
TGATGATGCCAAGAACAATTGGCTAAGATTGAACTGACAACACAAATCCATTATTTATTTTTGTATAATAAACAGAGGTT
GATGTGAACCAGCACAATGCATATTCAGACATTTGGATGGCTAGCAATGTCTAAATACACAATGTTTGGCACTTTCAGTT
AGCAGTAATCAACAGAGCTTAATGTACTCCAGCACTGTGTGCTGTTTATATTTAAATGAAATCACATCTGTAGAACTCAG
TACAACTTGTGGTGCAATTTTCAAATTTGTATCACCAATCCTCTCACATACAACACATAAGCCATGCACTTCTGAGCAAT
ATATATCCATAGAGATCAG-------TGGAAAATTTGCTGGTACCCAACCCAGCTACTGACGTAGTTGAAGATGAGTCCA
CATTTGTGATTCAAGAATTCTT-ACAAATTAAGACCGCCAA----AACAACTTTGAGGGCGGGGCCATAAAAATGGTTGG
AGTGTTGTACAAGAAGAATAGCTATAGCTATTTTCTTCAGCGCCACCAATAAAAAATCAGCTGATGAAGTACATTGGATT
TGGAAGCTTAAAGGATCTCGTTGCCATTGGCAATCCTATCAAATCACTCCATTGATCCCCAGAGTTTCCAAGTATCTTGA
ACCCTTCCGCTTCCATCGCAGCTCGCCTCTCTGATTTGTATTGCACAGCGGTCTTGCCAATATCAGAGATTCGCCTGCAG
CATGT-------GTATACTTCCGATTAATACAAACTGGCTATGGTACATAGAATTGGCTGCAAAATGGAGTAATTTTTTA
ATGACTGTATGTACTTTCCTTTTGTGTATAGCAAGAGCACAAGCACAAGTAAAAAATGGGGAAATAAAACTTAGATAAAA
CTAGATGGTT------TACACTGCACGGCCTCTCTTTTTTATAGCCACATTATAC------GCAACTCAAAGTAGGAGAA
AGATGGTTAACAGCCTAACTTCAAAATGATCCACTAACGATTCTAAA--------------CTACAATGGCAATATAGAA
AATCATAGTACAGCAGAGTTCTTTGTTTGATAGAATTTTGGCAACACTCCTTACATTGAACATCATTCAACACACTGCTA
GAAGTTAAATTGTGACACAATT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS------S---S-------------------S--S-----S-SS----------S----------S---
-----S-----S-------S------------------S-S---S----------------------------S-SS---
-S-----------------S-------------S-----------S-----S--------------------------S-
--------------------------S--------------------------S--------------------------
----------------S-------------------S-------------------------------------------
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------------------------------------------------------------------S-------------
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------------------------------------------------------------------------------S-
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--------------------S-------S---------------------------------------------------
-----------------------------------------------------------S--------------------
----------------------------------------------SSSSSS--------------------S-------
-----------------------------------S--------------------------------------------
------------------------------------S---------------------------------------S---
---------------------------S-----------------------S----------------------------
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-----------S-------------S----------------------SS---------------SS----S-----S--
---S------SS--------------------------------------------------------------------
--------------------------------------SSSS--------------------------------------
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-------S------------------------------------------------------------------------
---------S--------S-------------S-----------------------------------------------
----------------------------------------------S----------S----------------------
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-------------------------S-------------------S-----------S----------------------
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-------------------------------------------------------S------------------------
---------------------------------------------------S----------------------------
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---------------------------------------------------------------------------S----
----------------------------S---------------------------------------------------
---------------------------------------S----------------------------------------
-------SS-----------------------------S----------SSS---------S------------------
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>forward_42
----------------------ATTTGACCGGCCCATTAGCA--------------------------------------
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>reverse_1468
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---------------------------AACTTCTCACAGGACAGGGC---------------------------------
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>forward_51
-------------------------------GCCCATTAGCAGGAGGTGTT-----------------------------
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>reverse_1691
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----------GAGCCGTCAAGAGCATGGAG--------------------------------------------------
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>forward_260
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GACTGGGCCGACATACCATT------------------------------------------------------------
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>reverse_2286
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---------------------------------------------GGGCACAACACACAAACCAT---------------
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