>input_sequence_63354
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----------------------------CTCCCCGGCGCCGCCGCAGCAGCAAGATGGTGAAGGGACGCACCGGCCAGCG
CGTGAGGCTCTACGTCCGCGGCACCATCCTCGGATACAAGAGGTGAGCAGCTCCCTCCGCCGCCGCGGCTTCGCTCCTTC
TCCGGTTCTCCCTCGCGTGGGTCT-TGACTGAATCCGTGGGGTTTGGTCGGGCGCGTGCAGGTCCAAGTCGAACCAGTAC
GAGACGGCGTCGCTGGTGCAGATCGAGGGGGTGAACACCAGGGAGGACGTGGCCTGGTACGGCGGCAAGAGGATGGCCTA
CGTCTACAAGGCCAAGACCAAGAGCAACGGCACCCACTACCGCTGCATCTGGGGCAAGGTCTCCCGCCCCCACGGCAACA
CCGGCGTCGTCCGCGCCAAGTTCACCTCCAACCTGCCCGCCGAGGCCATGGTGAGTTGCTCGGTCGAGCTTCTCCGGTTG
TCTGTTTCGGTGGCATGCGTGCTGCTCTTTGATGCACTGACTTGCGCTGCCTGCTGACGGTTCTGTCGTGTTTGCTTTGC
TCAGGGGAAAAAGGTCAGGGTCTTCATGTACCCGAGCAGCATCTAAAAGGTTAGAATCGATCCATTGCTGGTTATTTGTT
TACCATCCAAGCGTCAGTTCCAGAATGTGTTATTGCCTGATGCACAAATTTCTAGATCGAATTGTCAGTTATTCATGATT
CATCCATGTGTATTTTGTTTAGTCAGTGT-------AAAATCTTGATTACACACTTGCAATATGTAATATGTGCTGGCAT
TCT-CTCTCGAGCAAATTGCATAGTGAAGTGGG-AAATGGGCACTACTTGTCTATACTGAATTTGGTCCCATGTGTAAAT
TTGTGTATGGTGTATGGATATTCCTGCTCCTAAACTA--TTGCTGGACATGTGACTTCACCTTGACCAACCAAGGATTAG
TCGCTTGGAAGTTGCATAAAAGATAACTGCATTATTTAGCACTTAGGCATTTGCAAGTACTGTTAATAAATCATTTTTTA
CTTG----------------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G326700
TATGATTTCCGCATGCCAAAATAATGGACAAGAGCTTGGAATTTTTTTGGCTACTGTATGGCGTAATCCTCTAACTTCAC
ATAAATATATTTGATCTTAAAGATAAAATGGCTTAAAGTGTCAAGGGTTGTTACTCCGCGAGAACATGGGCCATAGCAAG
TCAAGCACGCATGCTTTTACATTGAAATCCCTACCGGGAGATAAAATAATAATGTAATATTCTACCTCTTCCTGAGCATA
CAAAAAGTGCATCATTAACTCCTTTAGCAGCATCCAACAATTCCATGCACACACTACACATAAATACTTTACTGGACCAA
TAAGAACAATACGTTTTAGGCATATCGATATCACAAAAAATCAACTGTATC-CCGCGAGAATCTAGAATCCAGGCACATC
CATTCCATACCTAGGCGCAGTGCACGCACGAAGCTGGAACAAGATGAAAATATCGTTTGAGAGCAAATCACAATCTACTT
TTCGAATTTGAATCAACCCCAAAGCGAGCGGTGTCCAATTTTGAAAATACTCCCTTCGTCC-------------------
------CTTATTTTGGGCGGAGGTTATTTTGGGACGGAGAGAGTAGTACCTTTCTGTGTGATGTTAATTATAAAA-GGAA
AAATGCAACCTGTAAATTAAAAAAAAACATTTTTAAC-------------------------------------------
-------------------------------------------------------------------------TTAGTAA
CCAAATTTACATTTT--TAAGGGCATGTTGCCAATTTTTACTTGCCGTGTGAATTCATTTCCGCGGCCTGCTTACGCCCT
GACCCGGCCTTCCGTCAGCCCATCCAAACTAGCTAAACT--CTTAGGCCTGCAAAACAGAAGCGACCCACTTACGATAGC
AGGCCCCGCCCGCCTCAGCTGCGCAGTCTCCCCCAAAAGCGAATCACGGCCGTCCATACAAACCCTCACCAGCAAATCGC
CACCATCCACTTCCACACAGAGGGATACATAACCCACCACGAGCGCAGCCCGCTAGGGTTTCTTCT-CCCTTCCTGGTTG
CGCAGCTCACCCCGAACCCCCAGCTCCCCTCCCCGGCGCCGCCGCAGCAGCAAGATGGTGAAGGGACGCACCGGCCAGCG
CGTGAGGCTCTACGTCCGCGGCACCATCCTCGGATACAAGAGGTGAGCAGCTCCCTCCGCCGCCGCGGCTTCGCTCCTTC
TCCGGTTCTCCCTCGCGTGGGTCT-TGACTGAATCCGTGGGGTTTGGTCGGGCGCGTGCAGGTCCAAGTCGAACCAGTAC
GAGACGGCGTCGCTGGTGCAGATCGAGGGGGTGAACACCAGGGAGGACGTGGCCTGGTACGGCGGCAAGAGGATGGCCTA
CGTCTACAAGGCCAAGACCAAGAGCAACGGCACCCACTACCGCTGCATCTGGGGCAAGGTCTCCCGCCCCCACGGCAACA
CCGGCGTCGTCCGCGCCAAGTTCACCTCCAACCTGCCCGCCGAGGCCATGGTGAGTTGCTCGGTCGAGCTTCTCCGGTTG
TCTGTTTCGGTGGCATGCGTGCTGCTCTTTGATGCACTGACTTGCGCTGCCTGCTGACGGTTCTGTCGTGTTTGCTTTGC
TCAGGGGAAAAAGGTCAGGGTCTTCATGTACCCGAGCAGCATCTAAAAGGTTAGAATCGATCCATTGCTGGTTATTTGTT
TACCATCCAAGCGTCAGTTCCAGAATGTGTTATTGCCTGATGCACAAATTTCTAGATCGAATTGTCAGTTATTCATGATT
CATCCATGTGTATTTTGTTTAGTCAGTGT-------AAAATCTTGATTACACACTTGCAATATGTAATATGTGCTGGCAT
TCT-CTCTCGAGCAAATTGCATAGTGAAGTGGG-AAATGGGCACTACTTGTCTATACTGAATTTGGTCCCATGTGTAAAT
TTGTGTATGGTGTATGGATATTCCTGCTCCTAAACTA--TTGCTGGACATGTGACTTCACCTTGACCAACCAAGGATTAG
TCGCTTGGAAGTTGCATAAAAGATAACTGCATTATTTAGCACTTAGGCATTTGCAAGTACTGTTAATAAATCATTTTTTA
CTTGCTCTGAATAAGAGAGAGGGACAGATTGATGGTAGGGATGTGGAATTGCTGGGTGTATTTCTCGTACATGATCAAGA
TTTTTAGTTCGATGACATTCTGTTGCCATGA-------------------------------------------------
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-------------TATCTTATTTTGTGCATAATTATGGTTCGAAATTCTTCATGTAAATCTTGATTCACAGCCTTCTGTT
TGATCCCCTGCTAATTTTATACGTCGCATCGAATGCAGGTTATTTTGAAGTGTGGAGGATTTCGCTCGTCCCTTAGGTTT
CATTTCAGAGTCTTGTAAGATGGATTCAGGCCTGGATAGCAAGTTCAACTGCTGTTTCCCTGTGAAGAACTGTAGTCTTC
ATGTTATCTTGAATGTGTGGGTCGCACATTATATGATGTTATATGTAGTTCGAACCTGATGCTATGTTTTGCCCACTTTT
TGCGTTCTATCCTTGCAATTTTAGCTATCAAATCTGATTCAGAGATGTTTTTACTCCTCTTTTATGCATGTTTATATGCC
CTTTTGATGATTGGTGGAAGTGGTTTAA-----TTGGCTTGGCACTGACGAGCGCGAGAACTTGTTCGTTTGGGAAGATT
AAAATGCCTTTTATGGAAATTGTTGAACGCCACTGTATGTTAGACTAACGAGTCTCA--TGTACTTTGTGCTTATCGTCT
CCCCGAAGATTAGCTGTTAGCTAGCCTCTAGGAGGTTGTCAGCAC------------GTTTCCATGCCCCCTGTGCATGT
ATTTTTAGCCCCTGGCAAGAAACTAGGATTTCTGGAAAAACTGTATCTGGTAACCATTTGGTGTTTATACAACAACAGCA
ACAAAGCCTTTAGTCCCAAACAAGTTGGTGTAGGCTAGGTGAAACCCATAAGATTCAGCAACCAATTCATGGCTTTGGCA
CATGGATAGTAAGCTTTCATGCACCCTTGTCCATAGCTAGCTCTTTGGTGATACTTCAATCCTTCAGGTCTCTCATAACG
GACCCCTCTCATATCAAATTCGGTCTACCCCGCCCTCTCTTGACA
>chrUn_1
TATGATTTCCGCATGCCAAAATAATGCACAAGAGCTTGGAATTTTTTTGGCTACTATATGGTGTAATCCACTAACTTCAC
ATAAATATATTTGATCTTAAAGATAAAATGGCTTAAAGTGTGAAGGGTTGTTACTCTGCAATAACATGGGCCATAGCAAG
TCAAGCACGCATGCTTTTACATTGAAATCCCTATCGGGAGATAAAATAATAATGTAATATTCTACCTCTTCCTGAGCACA
CAAAAAGTGCATCATTAACTCCTTTAGCAGCATCCAACAATTCCATGCACGCACTACACATAAATACTTTACCGGACCAA
TAAGAATAATATGTTTTAGGCATATCGATATCACAAAAAATCAATTGTATCACCGCGAGAATCTAGAATCCAGGCACATC
CATTCCATACCTAGGGGCAGTGCACGCAC---------------------------------------------------
--------------------AAAGCGAGCGGTGTCCAGTTTTGAAAATACTCCCTTCATTCCTTACTTTATACTAAATCT
GCAACACTTATTTTGGGCGGAGGTTATTTTGGGACGGAGAGAGTAGTACCTTTCTGTGTGAAGTTAATTATAAAAAGGGT
AAATGTAACCTGTAAATAAGAAACCAATTTACTCCCTTTGTTCACTTTTATAAGTCCTTGAAGACATTTCAGACAACATG
CAAAGCAACCTATTTTTAGTTGTCTGAAATGACTTATAAAAGTGAACGGAGAGAGTACATTTTTTTTAACTTATTAGTAA
CCAATTTTACATTTTTATAAGGGCATGTTGCCAATTTT-ACTTGCCGCGTAAATTCATTTCCGCGGCCTGCTTACGCCCT
GACCCGGCCTTCCGTCAGCCCATCCAAACTAGCTAACCCTCCTTAGGCCTGCAAAAGAGAAGCGACCCACGTACGATAAC
AGGCCCCGCCCGCCTCAGCTGCGCATTCTCCCCCAAAAGCGAATCACGGCCGTCCATACAAACCCTCACCAGCAAATCCC
CACCATCCACTTCCACACAGAGGGATACATAACCCACCAGGAGCGCCGCCCGCTAGGGTTTTCTCTCCCCTTCCTGGTTG
CGCAGCTCACCCCGAACCCCCAGCCCCCCTCCCCGGCGCCGCCGCAGCAGCAAGATGGTGAAGGGACGCACCGGCCAGCG
CGTGAGGCTCTACGTCCGCGGCACCATCCTCGGATACAAGAGGTGAGCAGCT------------------TCGCTCCTTC
TCCGGTTCTCCTTCGCGTGGGTCTCTGACTGAATCCGTGGGGTTTGGTCGGGCGCGTGCAGGTCCAAGTCGAACCAGTAC
GAGACAGCGTCGCTGGTGCAGATCGAGGGGGTGAACACCAGGGAGGACGTGGCCTGGTACGGCGGCAAGAGGATGGCCTA
CGTCTACAAGGCCAAGACCAAGAGCAACGGCACCCACTACCGCTGCATCTGGGGCAAGGTCTCCCGCCCCCACGGCAACA
CCGGCGTCGTCCGCGCCAAGTTCACCTCCAACCTGCCCGCCGAGGCCATGGTGAGTTGCTCGGTCCAACTTCTCCGGCTG
TCTGTTCCGGTGCCATGCCTGCTGCTCTTTGATGTACTATCTTGTGTCGCATGCTGACGGTGCTGTGGTGTTTGCTTTGC
TCAGGGGAAAAAGGTCAGGATCTTCATGTACCCGAGCAGCATCTAAAAGGTTAGAATCGATCCGTTGCTGGTTATTTGTT
TACTATCTC-------------GAATGTGTTGTTGCCTGATGCACAATTTTCTAAATCGAATTGTCAGCTATTCATGATT
CATCCATGTGTATTTAGTTTGGTCCGTCCGTCAGTAAAAATCTT-ATCACACACTTGCAGTATGTAATATGTGCTGGCAT
TCTTCTCTTGAGCAAATTACATAGTGAAGTGGGAAAATGGGCACTACTTGTGTATACTGAATTTGGTCCCATATGTAAAT
TTGTGTATCATGCACAGATATTTCTGCTCTTGCAGCATCTTGCTGGACATGTGACTTCACCTTGATCAACTGAGGATTAG
TCGCTTGGAACTTGCATAAAAAATAGCTGCATTAGTTAGCCTTTAGGCATTTGCAAGCACTATTGATACGTCATTTTTTA
CTTGCACTGAATAAGAGAGAGGGAAAGAATGATGGTAGGGATGAGTAATTTCTGGTTGTGTTTCTCGCACATGCTCCGGA
ATTTTAGTTTGATGATATTCTGTTGCCGCAGTATCTTATTTTGTGCATAATTAATCATTTTTTACTTGCACTGAATAAGA
GAGGGACAGAATGATGGTAGGGATGAGTAATTTCTGGGTGTGTTTCTCGTACATGCTTGAGAATTTTAGTTTGATGATAA
TCTGTTTCCCCAGTATCTTACTTTGTGCATAATTATGTTTCGAAATTCTTCATATAAATCTTGATTCAGAGCCTTCTGTG
TGATCCACTAGTAATGTTATATGTCCCATCGAATGCAGGTTATTTTGAAGTCTGGAGGGTTTCGCTCGTCCCTTAGGTTT
CATTTC-GAGTCATGTAAGATGGATTCAGGCCGGGATAGCAAGTTGAACTGCTGTTTCCCTGTGAAGAACTGTAGTCTTC
ATGTTATCTTGAATGTGTGGGTCGCATATTATATGATGTTATATGTAGTTCGAACCTGATGCTGTGTTTTGCCCACTTTT
TGCGTTCTATCCTTGCAATTTTAGCTATCAAATCTGATTCAGTGATGTTTTTACTCTTCTTTTATGAATGTTTGTATGCC
CTTTTGATGATTGGTGGAAGAGTTTAACTTCTTTTGGCTGGGTACTGACCAGCGCAAGAACTTGTTTGATTGGGAAGATC
AAAATGCCTCCTA-GGAAATTGTTGAACGCCCATGTCTGTTAGACTGCCAAGGTTCATGTGCACTTTGTGCATGTCCTCT
CCCGGATCGT-----------TAGCCTGTAGCATGTTGTCAGCACCTCCCCATGCACGTTTCCCTGCCCCCTGTGCATGT
ATTTTTTGCCCTTGGCCAGAAATTCTAATATCT-GAAAAACAATTTCTGGTAACCAGTTGGTGGTTA-------------
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>chr6B_813
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-------------------------------------------------------------------------------C
AGGCCCCGCCCGCCTGGGCTGCGCATTCTCCCCCAAAAGCGAATCACGACCGTCCATACAAACCCTCACCAGCAAATCCC
CGCCATCCACTTCCACACAGAGGGATACATAACCCACCAGGAGCGCCGCCCGCTAGGGTTTTCTCTCCCCTTCCTGGTTG
CGCAGCTCACCCCGAACCCCCAGCTCCCCTCCCCGGCGCCGCCGCAACAGCAAGATGGTGAAGGGACGCACCGGCCAGCG
CGTGAGGCTCTACGTCCGCGGCACCATCCTCGGATACAAGCGGTGAGCAGCTCCCTCCGCCGCCGCGGCTTCGTTCCTT-
-------CTCCCTCGCGTGCGTCT----CTGAGTTCGTGGGGCTTGGTTGGGCGC--GCAGGTCCAAGTCGAACCAGTAC
GAGACGGCGTCACTGGTGCAGATCGAGGGGGTGAACACCAGGGAGGACGTGGCCTGGTACGGCGGCAAGAGGATGGCCTA
CGTCTACAAGGCCAAGACCAAGAGCAACGGCACCCACTACCGCTGCATCTGGGGCAAGGTCTCCCGCCCCCACGGCAACA
CCGGCGTCGTCCGCGCCAAGTTCACCTCCAACCTGCCCGCCGAGGCCATGGTGAGTTGCTCGGTCGAGCTTCTCCGGTTG
TCTGTTTTGGTGGCATGCTTGCTACTCTTTGATGTACTGACTTGTGTTGTCTGCTGACGGTGCTGTGGTGTTTGCTTTGC
TCAGGGGAAAAAGGTCAGGGTCTTCATGTACCCGAGCAGCATCTAAAAGGTTAGAATCGATCCATTGCTGGTTATATGTT
TACCATC-------------CAGAATGTGTTGTTGCCTGATGCACAATTTTCTAGATCGAGTTGTCAGTTATTCATGTTT
CATCCATGTATATTTTGTTTGATCAGTGT-------AAAATCTT-ATCACACACTTGCAATATATAATATGTGCTGGCAT
TTTTCTCTTGAGCAAATTGCACAGTGAAGTGGGAAAATGGGCACTACTTGTGTATACTGAATTTGGTCCTGTATGTAAAT
TTGTGTATGGTATACTGAATTTGATA------------------------------------------------------
-------------------------------------------------------------------AAAACATCTTTTA
CTTACACTGAATAAGAGGGAGGGACAGAATGATGGTAGGGATGAGGAATTGCTTGGTGTATTTCTCGTGTATGCTCAAGA
ATTTTAGTTTGATGATATTCTGTTGCCATAA-------------------------------------------------
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-------------TATCTTATTTGGTGCATAATTATGATTCGAAATTCTGATTGTAAATCTTGATTTACAGCCTTCTGTT
TGATCCCCTGCTAATGTTATATGTCGCATCGAATGCAGGTTACTTTGAAGTGTGGAGGATTTCGCTCGCCCCTTAGGTTT
CATTTCAGAGTCTTGTAAGATGGATTCAGGCCCGGATAGCAAGTTGAACTGCTGTTTCACTGTGAAGAACTGTAGTCTTC
ATGTTATCTCGAATGTGTGGGTCGCACATTATATGATGTTATATGTAGTTCGAACCTGATGCTGT-TTTTGCCCACTTTC
TGCGTTCTATCCTTGCAATTTTAGCTATCAAATCTGATTCAGTGATGGTTTTACTCTTCTGATATGAATGTTTGTATGCC
CTTTTGATGATTGGTGGAAGAGTTTAACTTCTTTTGGCTGGGTACTGACCAGCGCAAGAACTTGTTTGATTGAGAAGAT-
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>SNPs
--------------------------S----------------------------S-----S-------S----------
-----------------------------------------S--------------S--S-S------------------
---------------------------------S--------------------------------------------S-
--------------------------------------------------S---------------------S-------
------S----S--------------------------------S-----------------------------------
---------------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS-----------------S-------------------S-S--------------------
-------------------------------------------------------------S----------------SS
-----S-----------S-S---SS--SS-SS-SSSS-------------------------------------------
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----S---------------------------------S--------S--S-----------------------------
------------------------------------S-S-----------------S-------------S-------S-
-------------------------S----------------------------------------------------S-
---------------------------------------S------S--------------SS-----------------
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------------------S---------------S---------S-S--------------S----S-------------
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-------SSSSSSSSSSSSS-----------S---------------S--------------------------------
--------------------S-----------------------S--S--------------------------------
--------S------------------------------------------S--------------------S-------
--------------SS------S------S-SS-SS-----------------------------S----SS--------
----------S----------S---S--------S-----SS---------------S---S--S---------------
-----S----------------------S--------------S-----------------------------S------
S--------S-----S-------------S--------------------------------------------------
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-------------------------------------S------------------------------------------
---------------S-----S----------------------------------------------------------
--------------------------------S------------S----------------------------------
---------------------------------------------------------------S----------------
------------------------------------------S-------------S---------S------S------
--------------------S-S--S-S-----------S--S------S-----S----------S-S----------S
---------SS--S-----------------SS---S---------SS-S--SS-------S---------S-S--S---
---S--SSS-SSSSSSSSSSS------S---S-S-----------------------------S----------------
------S----S----S-----S-SSS--S---S-------SS-S-----------S------S---SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_142
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------------------------------------------AAGGGTTGTTACTCCGCGAG------------------
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>reverse_1667
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------------------------------------------------------------------CGTGTTTGCTTTGC
TCAGGG--------------------------------------------------------------------------
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>forward_1647
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---------------------------TTTGATGCACTGACTTGCGC---------------------------------
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>reverse_3213
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------------GCTTTCATGCACCCTTGTCC------------------------------------------------
---------------------------------------------
