>input_sequence_63339
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------------------------------------------------------ATGAAGGATCATCATCCGCCTGCATC
CCCATTAGGATCAGGGGAACGTTCCCCGTTTAAAGATCTGACAAATACGCCTACTCATGTGAATGCAAATCAAGCGGGTG
AAAAATTGCAAGAACAAACACCAAAAAGTGGTCAAAATTGGTTTGCACGAATGACCGATGAGAAGAGAGCGGAATACAAC
AAGAAGCGATGTATTGCCCGAGCACGAAGACACCTTCTCCACTACGGTCTACTCACAGCGCCTACGGTTCAGAGGTAATG
TTACACCGGACCCTGTTATGGGTCTTTCATCATTCGATCACTAAAATTGCTTTTGTTCACTTTATTATACGACAAATGCA
TGTTCACTGAAAGTACTCCTGTGAAGGTACTTTGTCCATTTATGGTGTGTCGATGTCAAAATTCGGTACTCTGATTAGAG
TGACCTTATTTCCATATGCAGTTGTAGATTTCAGTGTG--ACATAGTTCCAGAGTGTACTTTGCATGATTTGTTCAAAAT
CTGCATGTTTATTTCCATCTGCTTTGAAGGCTGCATATTCTACTAACTTCCTATGTAGAAGCATGCTCATAGGAAGGTAA
ATAGGATTCTTGAGTTCGTCTTTTGTTTTTGTTGACTGTAATGTTAAAGCAGAACGATTGATGCTGCTGCAGTTCATCTA
CATTGATTCTTGATTTACCCTTCTTATTACCATTTGCTAACTTAACCACCTCTCTCTCTCTCTCTCATGTTGTTTCTGAA
GATGTTTTATGTGTCATGTCGACAAGGGTGTTTGACGGGAAATCTAGGAAGGCTGCATATGAGGTGAATCAAGGTAATAT
ATATGACATAGTGAAGGATAAACTCCTCTCCCTCATGTTGTTTCTGGATATGTTATT---C-GTCGTGTAAGAAAGCTAA
GATTTATTTTGGCCACGTGATTTCCGTAAACATATACTGGAAATATTTCATACAAAGTTTCCCTCATATCAAACTATTGT
TTTTCTTCTAACAGGAAGTTGGTAG-------------------------------------------------------
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>chr7B_1_TraesCS7B01G078100
TAATACAATCTACTTCTACATTTTTGTTTCATGAAATGACTACACAATGATATAGAAGATAGTGTGTGTACAAAAATAAT
CATAACGTCAATGTGTCCGTAACATTAGGAAAGTCAATTTAGTACCTGGTATATGAGGCCCAGTATATGATCCTTCCACG
CAAGACAAATTGATGCGTGTGATTCTTCTCTTTCTGTATAATCATATAGTTCATGGCCGAGAGTGGTCATCTTAGTGCAT
GATGTTCTGCATACACCGCAATGCCAAAGTAGCATTGTTGTGGGATAATAGCCATGGAACTAGCAGTAAAAGGTGAATTA
TCATGATCCACGACAATGCCAAACGCAGCATTAAAAGGGTTACAGTCTGATTTTTGAGTTATTT-----------TTAAT
AAGCTCTTAATATAGTTGACAAAATTCATTGTGTTGTTGAAATTGCCTTTTAAATGTTGTCTGGAATCTGCACTTTCCCG
CAATGCCACAACGGACTGCTCAAGTGGCAAGAAAAATACCTT-TGAACTTTTCGAGGATGTTTTCAATGATCTACTAATA
TCTGAAATTCAGGCAATCTCACTAAGATTATTCATATGTTCTTTATTTGCCTTCTCCCTAACAACAGATAGTTTATTTCT
ACTAGTTTAGACAATTGGCAGTCATCGACATTTCCTGCAGCTAAGGTCCTTTTTGTCACCTTTT-AGATGTACCTTTTTA
TACACAAAAACCTTTCTTGTTTCACTGAATCCAGGCAAGACTTGAGAGTTTACTTTTTGCACTGAATCCAAGCAAGACTT
GAGATTTTAGGGTTACTTGTTTGCAACATTTAAAAATTCAGCTTCTCAATATTAGATGAGAACTTAGCATACCTTCAGTT
AAGATCCATGTGTACTTTCTCCAACATTTAAGAATTCAGT-CACATCCCTTTGTATTAAATTTATCCAAAGGTGTAGCAT
CATTATGTGCTTGTACTGATTTAAAATGTTCCCTATTTTTTTGACATACCACGGATGAAGGATCATCATCCGCCTGCATC
CCCATTAGGATCAGGGGAACGTTCCCCGTTTAAAGATCTGACAAATACGCCTACTCATGTGAATGCAAATCAAGCGGGTG
AAAAATTGCAAGAACAAACACCAAAAAGTGGTCAAAATTGGTTTGCACGAATGACCGATGAGAAGAGAGCGGAATACAAC
AAGAAGCGATGTATTGCCCGAGCACGAAGACACCTTCTCCACTACGGTCTACTCACAGCGCCTACGGTTCAGAGGTAATG
TTACACCGGACCCTGTTATGGGTCTTTCATCATTCGATCACTAAAATTGCTTTTGTTCACTTTATTATACGACAAATGCA
TGTTCACTGAAAGTACTCCTGTGAAGGTACTTTGTCCATTTATGGTGTGTCGATGTCAAAATTCGGTACTCTGATTAGAG
TGACCTTATTTCCATATGCAGTTGTAGATTTCAGTGTG--ACATAGTTCCAGAGTGTACTTTGCATGATTTGTTCAAAAT
CTGCATGTTTATTTCCATCTGCTTTGAAGGCTGCATATTCTACTAACTTCCTATGTAGAAGCATGCTCATAGGAAGGTAA
ATAGGATTCTTGAGTTCGTCTTTTGTTTTTGTTGACTGTAATGTTAAAGCAGAACGATTGATGCTGCTGCAGTTCATCTA
CATTGATTCTTGATTTACCCTTCTTATTACCATTTGCTAACTTAACCACCTCTCTCTCTCTCTCTCATGTTGTTTCTGAA
GATGTTTTATGTGTCATGTCGACAAGGGTGTTTGACGGGAAATCTAGGAAGGCTGCATATGAGGTGAATCAAGGTAATAT
ATATGACATAGTGAAGGATAAACTCCTCTCCCTCATGTTGTTTCTGGATATGTTATT---C-GTCGTGTAAGAAAGCTAA
GATTTATTTTGGCCACGTGATTTCCGTAAACATATACTGGAAATATTTCATACAAAGTTTCCCTCATATCAAACTATTGT
TTTTCTTCTAACAGGAAGTTGGTAGAATATGCAGCCTTCAAAGCAGATGTTTGTGAATTTTATGCCAGGTGAGCCTCTTT
CATTTTAATGCTTGAGTGCTTTTCTCTGAACTTTTAAGTCCTAATGGTGGCGGCGGTAGGAACCCAGCCCCTTCTCCCTT
GCCTGCTCCAGCAATGATGGAGGCGAAGAGGAGGAGCGCCAATAAGATAGGTCGCTATGAGCGTGTGAGGAGAAGTGGTA
ACGCTCTGCGCCCTCTGCTGGGGCGGCAGCGCCACCGTTGCCACGTGCCTCGGCTTCTCCATCGGATGGAAGGTTACATC
ACCCCCCTTCTGCCACTCTTGTGTTCTTTGGTGATTTCTATGTATTCAATATTAACCGTTCTCGGATTTTGTTGTATTTC
TAAAAAGTTATGAGAAGAAATAATTGATTTGCGCTTAATTACTGTAGTGGGGGAAGGGATATTCAGAATTTGTGGTCATC
TTTGTAGAACAACATCAGGGATAATTAATGTGAAAAGGGGATATGAATGGTTGTGGGTTCGGCCGGGGAGGCGGCGGCGG
CGGGAAGAAGCGGCGCATCGTCAGATAGCAATGACTACAGGAAGAATACTGTTGCTC-----------------------
---------------AGTTAGTATGGATTTCTTATCACTTCCTTTTTCTTGTAGTCAAGTTATGAAACCATGCTTTGATG
ATAACTTCATCCGTAATACTCTGCCGCTGGTTTCAAGTCATGAGCAGATGGAGATCATCAGTGCATCATCTCTTACGCAA
CTGCTACTGTAATCGAGTCCTTTGCAAGCGCTGGTAAGATCTTTCTACACAGCTTAGTTACATCTCTCTTCTTAAATTTA
CCAGGATTTTTTTAGTTGCTTTTCCTCTAATAAGATGCATCATACTTACTGTTGAATAGTTTATCAAATATATATATTCT
TGCTGCACATTTTGTATCAACTGATAACTTTGAAACTTTTCTTCTCTCATTAGATCATCCTTACTATTGGATATGCACAT
GAATAACTAAAGGCGCCATGACA
>chr5A_1
TAATACAATCTACTTTTACATTTTTGTTTCATGAAATGACTACACAATGATATAGAAGATAGCGTGTGTACAAAAATAAT
CATAATGTCAATGTGTCCGTAACATTAGGAAAGTCAATTTAGTACCTGGTATATGAGGCCCAGTATATGATCCTTCCACG
CAAGACAAATTGATGCGTGTGATTCTTCTCTTTCTGTATAATCATATAGTTCATGGCCGAGAGTGGTCATTTTAGTGCAC
GATGTTCTGCATACACCGCAATGCCAAAGTAGCATTGTTGTGGGATAGTAGCCATGGAACTAGCGGTAAAAGGTGAATTA
TCATGATCCACGACAATGCCAAACGCAGCATTAAAAGGGTTACAGTCTGATTTTTGAGTTATTT-----------T----
-------TAATATAGTTGACAAAATTCATTGTGTTGCTGAAATTGCCTTTTAAATGTTGTCTGGAGTCTGCACTTTCCCG
CAATACCATGACGGACTGCTCAAGTGGCAAGAAAAATACCTTGTGAACTTTTCGAGGATGTTTTCAATGATCTACTAATA
TCTGAAATTCAGGCAATCTCACTAAGATTATTCATATCTTCTTTATTTGCCTTCTCCCTAACAACAGATAGTTTATTTCT
ACTGGTTTAGACCATTGGCAGTCATCAACATTTGCTGCAGCTAAGGTCCTTTTTGTCACCTTTTTAGATGTACCTTTTTA
TACACAAAAACCTTTCTTGTTTCACTGAATCCAGGCAAGACTTGAGAGTTTACTTTTTGCACTGAACCCAAGCAAGACTT
AACATTTTAGGGTTACTTGTTTGCAACATTTAAAAATTCAGCTTCTCAATATTAGATGAGAACTTAGCATACCTTCAGTT
AAGATCCATGTGTACTTTCTCCAACATTTAAGAATTCAGT-CACATCCCTTTGTATTAAATTTATCCAGAGGTGTAGCAT
CATTATGTGCTTGTACTGATTTAAAATGTTCCCTATTTTCTTGACATGCCACGGATGAAGGATCATCATCCGCCTGCATC
CCCATTAGGATCAGGGGAACGTTCCCCGTTTAAAGATCTGACAAATACGCCTACTCATGTGAATGCAAATCAAGCGGGTG
AAAAACTGCAAGAACAAACACCAAAAAGTGGTCAAAATTGGTTTGCACGAATGTCTAATGAGAAGAGAGCGGAATACAAC
CAGAAGCGATGTATTGCCCGAGCACGAAGACACCTTCTCCACTACGATCTACTCACAGCGCCTACGGTTCAGAGGTAATG
TTACACCGGACCCTGTTATGGGTCTTTCATCATTCGATCACTAAAATTGCTTTTGTTCACATTATTATATGACAGATGCA
TGTTCACTGAAAGTACTCCTGTGAAGGTACTTTGTCCATCTATAGTGTGTCGATGTCAAAATTCAGTACCCTGATTAGAG
TGACCTTATTTCCATATGCAGTTGCAGATTTCAGTGTG--A--TAGTTCCAGAGTGTACTTTGTATGATTTGTTCAAAAT
CTGCACGTTTATTTCCATCTGCTTTGAAGGCTGCATATTCTACTAACTTCCTTTGTAGAAGCATGCTCATAGGAAGGTAA
ATAGGATTCTTGAGTTCGTCTTTTGTTTTTGTTGACTGTAATGTTAAAGCAGAACGATTGATGCTGCTGCAGTTCATCTA
CATTGATTCTTGATTTACCCTTCTTATTACCATTTGCTAACTTAACCACCTCT------CTCTCTCATGTTGTTTCTGAA
GATGTTTTATGTGTCATGTCGACAAGGGTGTTTGATGGGAAATCTAGGAAGGCTGCATATGAGGTGAATCAAGGTAATAT
ATATGACATAGTGAAGGATAAACTCCTCTTCCTCATGTTGTTTCTGGATATGTTATTTTCC-GTCATATAAGAAAGCTAG
GATTTATTTTGGCCATGTGATTTCCGTAAACATATACTGGAAATATTTCATACAAAGTTTCCCTCATATCAAACTATTGT
TTTTCTTCTAACAGGAAGCTGGTAGAATATGCAGCCTTCAAAGCAGATGTTTGTAAATTTTATGCCAGGTGAGCCGCTTT
CATTTTAATGCTTGAGTGCATTTCTCTGAGCTTTGAAGTCCTAATAGTGGCGGCGGTAGGAACCCAGCCCCTTCTCCCTT
GCCTGCTCCGGCAATGATGGAGGCGAAGAGGAGAAGCGCCAATAGGATAGGTCGCTATGAGCGTGTGAGGACAAGTGGTA
ACGCTCTGCGCCCTCTGCTGGGGCGGCAGCGCCACCGTTGCCACGTGCCTCGGCTTCTCCATCGGATGGAAGGTTACATC
ACCCCCCTTCTGCCACTCTTGCGTTCTTTGGTGATTTCTATGTATTCAATATTAACCGTTCTCGGATTTTGTTGCATTTC
TGAAAAGCTATGAGAAGAAATAATTAATTTGCGCTTAATTACTGTAGTGGGGTAAGGGATATTCAGAATTTGTGGTCATA
TTTGTAGAACAACATCAGGGATAATTAATGTGAAAAGGGGATATGAATGGTTGTGGGTTCGGCCGGGGAGGCGACGGCGG
CGGGAAAAAGCGGCGCGTCATCAGATAGCAGTGACTACAGGAAGAATACTGTTGTGATGATCATATACATATATATGTAT
TCCAGTTCGTTGCTCGGTTAGTATTGATTTCTTATCACTTCCTTTTTCTTGTAGTCAAGTTTTGAAAGCATGCTTTGATG
ATAACTTCATCCGTA-TACTCTGCCGCTGGTTTCAAGTCATAAGCAGATGGAGATCATCAGTGCATCTTCTCTTACGCAA
CTGCTACTGCAATCGACTCCTTTGCAAGCGCTGGTAAGATCTTTCTACACAGCTTAGCTACATCTCTCTTCTTAAATTTA
CTAGGATTTTTTTAGTTGCTTTTCCTCTAATAAGATGCATCATACTTATTATTGAATAGTTTATAAA--ATATATATTCT
TGCTGCACATTTTGTATCAACTGATAACTTTGAAACTTTTCTTCTCTCATTAGATCATGCTTACTATTGGATATGCACAT
GAATAACCAAAGGCGCCATGACA
>chr1A_1
TAATACAATCTACGTCTACATTTTTGTTTCATGAAATGACTACACAATGATATAGGAAATAGCGTGTGTACAAAAACAAT
CATAACGTCAACGTGTCCATAACATTAGGAAAGTCAATTTAGTACCTGGTATATGAGGCCCAGTATATGATCCTTCCACG
CAAGACAAATTGATGCGTGTGATTCTTCTCTTTCTGTATAATCATATAGTTCATGGCCGGGAGTGGTCGTTTTAGTGCAC
GATGTTCTGCATACACCGCAATGCCAAAGTAGCATTGTTGTGGGATAATAGCCATGGAACTAGTGGTAAAAGGTGAATTA
TCATGATCCACGACAATGCCAAACGCAGCATTAAAAGGTTTATAGTCTGATTTTTGAGTTATTTTTAATAAGCTCT----
-------TAATATAGTTGACAAAATTCATTGTGTTGCTGAAATTGCCTTTTAAATGTTGTCTGGAATCTGCACTTTCCCG
CAATACCACGACGGACTGCTCAAGTGGCAAGAAAAATACCTTGTGAACTTTTCGAGGATGTTTTCAATGATCTACTAATA
TCTGAAATTCAGGTAATCTCACTAAGATTATTCATATGTTCTTTATTTGCCTTCTCCCTAACAACAGATAGTTTATTTCT
ACTGGTTTAGACCATTGGCATTCATCAACATTTGCTGCAGCTAAGGTCCTTTTTGTCACCTTTTTAGATGTACCTTTTTA
TACACAAAAACCTTTCTTGTTTCACTGAATTCAGGCAAGACTTGAGAGTTTACTTTTTGCACTAAATCCAAACAAGACTT
CAGATTTTAGGGTTACTTGTTTGCAAAATTTAAAAATTCAGCTTCTCAATATTAGATGAGAACTTAGCATACCTTCAGTT
AAGATCCATGTGTACTTTCTCCAACATTTAAGAATTCAGT-CACATCCCTTTGTATTAAATTTATCCAGAGGTGTAGCAT
CATTATGTGCTTGTACTGATTTAAAATGTTCCCTATTTTTTTGACATGCCACGGATGAAGGATCATCATCCGCCTGCATC
CCCATTAGGATCAGGGGAACGTTCCCCGTTTAAAGGTCTGACAAATACGCATACTCATGTGAATGCAAATCAAGCGGGTG
AAAAACTGCAAGAACAAATACCAAAAAGTGGTCAAAATTGGTTTGCACGAATGTCTGATGAGAAGAGAGCGGAATACAAC
CAGAAGCGATGTATTGCCCGAGCACGAAGACACCTTCTCCACTACGATCTACTCACAGCGCCTACGGTTCAGAGGTAATG
TTGCACCGGACCCTGTTATGGGTCTTTCATCATTTGATCACTAAAATTGCTTTTGTTCACATTATTATACGACAGATGCA
TGTTCACTGAAAGTACTCCTGTGAAGGTACTTTGTCCATTTATGGCGTGTCGATATCAAAATTCAGTACCCTGATTAGAG
TGACCTTATTTCCATATGCAGTTGCAGATTGCAGTGTGACA--TAGTTCCAGAATGTATTTTGTATGATTTGTTCAAAAT
ATGCATGTTTATTTCCATCTGCTTTGAAGGCTGCATATTCTACTAACTTCCTGTGTAGAAGCATGCTCATAGGAAGGTAA
ATAGGATTCTTGAGTTCGTCTTTTGTTTTTGTTGACTGTAATGTTAAAGCAGAACGATTGATGCTGCTGCAGTTCATCTA
CATTGATTCTTGATTTACCCTTCTTATTACCATTTGCTAACTTAACCACCTCT----CTCTCTCTCATGTTGTTTCTGAA
GATAGTTTATGTGTCATGTCGACAAGGGTGTTTGATGGGAAATCTAGGAAGGCTGCATATGAGGTGAATCAAGGTAATAT
ATATGACATAGTGAAGGATAAACTCCTCTCCCTCATGTTGTTTCTGGATATGTTATTTTTTGGTCATGTAAGAAAGTAAG
A--TTTTTTTGGGCACGTGATTACCGTAAACATATACTGGAAATATTTCATACAAAGTTTCCCTCATATCAAACTATTGT
TTTTCTTCTAACAGGAAGTTGGTAGAATATGCAGCCTTCAAAGCAGATGTTTGTGAATTTTATGCCAGGTGAGCCTCTTT
CATTTTAATGCTTGAGTGCATTTCTCTGAGCTTTTAAGTCCTAATGGTGGCGGCGGTAGGAACCCAGCCCCTTCTCCCTT
GCCTGCTCCGGCAATGATGGAGGCGAAGAGGAGAAGCGCCAATAGGATAGGTCGCTATGAGCGTGTGAGGACAAGTGGTA
ACGCTCTGCGCCCTCTGCTGGGGCGGCAGCGCCACCCTTGCCACGTGCCTCGGCTTCTCTGTCGGATTGAAGGTTACATC
ACCCCCCTTCTGCCACTCTTGCGTTCTTTGGTGATTTCTATGTATTCAATATTAACCGCTCTTGGATTTTGTTGTATTTC
TGAAAAGCTATGAGAAGAAATGATTGATTTGCGCTTAATTACTGTAGTGGGGGAAGGGATATTCAGAATTTGTGGTCATC
TTTGTAAAACAACATCAGGGATAATTAATGTGAAAAGGGGATATGAATGGTTGTGGGTTCGGCCGGGGAGGCGACGGCGG
CGGCAAGAAGCGCCGCATCGTCAGATAGCAGTGACTGCCGGAAGAATACTGTTGTGATGATTATATACATATATATGTAT
TCCAGTTCGTTGCTTAGTTAGTATTAATTTCTTATCACTTCCTTTTTCTTGTAGTCAAGTTCTGAAACCATGCTTTGATG
ATAACTTCATCCGTA-TACTCTGCCGCTGGTTTCAAGTCATGAGCAGATGGAAATCATCAGTGCATCATCTCTTACACAA
CTGCTACTGCAATTGACTCCTTTGCAAGCACTGGTAAGATCTTTCTACACAGCTTAGCTACATCTCTCTTCTTAAATTTA
CCAGGATTTTTTT-GTTGCTTTTCCTCTAATAAGATGCATCATACTTACTGTTGAATAGTTTATCAA--ATATATATTCT
TGCTGCACATTCTGTATCAACTGATAACTTTGAAACTTTTCTTCTCTCATTAGATCATGCTTACTATTGGATATGCACAT
GAATAACTAAAGGCACCATGACA
>chr3A_111
--------------------------------------------------------------------------------
------------------------------AAGACAATTCTGTACTTCATATATGAGGCCAAGTATATGATCCTTCCACA
CAGGAG-AATTGATGCTTGTGATTCTTTTCTTTCTGTATCGTCCTACAGTTCATGACCGAGAGTGGTTGTTTTAGTGCAT
GATGTTCTGCATACACCCCAATGCAAAACTAGCATTGTTGTGGGATAATAGCCATGGAACTAGCGGTAAAAGGTGAATTA
TCATTATCCACCGCAATGCCAAACGCAGCATTAAAAAGTTCAGAACAGATAGT---------------------------
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------------------------------TTCATATGTTCTTTTTTTGCCTTCTCCCTAACAACAGATAGTTCATTTCT
ACAGGTTCAGAACATTGGCAGGCATCAGCATTTGCTACAGCTAA-GTCCTTTTTGTCACCTTTT-AGATGTA-CTTTTTA
TAGGCAAAAACCTTACTTGTTTCACTGAA-------------------------------------TCCAAGCAAGACTT
GAGATTTTAGGGTTACTTGTTTGCAACATTTAAGAATTCAGCTTTTCAATATTAGAT---------GCATACCTTCATTT
AAGATCCCTATGTAGTTTCTCCAACATTTAAGGATTCAGTTCACATCCCTTCGTATTAAATTTATCAAG-GGTGTAGCAT
CATTTTGTGCTTGTACTGACTTAAGAT-----------------------------------------------------
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>SNPs
--------------------------------------------------------------S-----------------
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----------------------------------------------------------------------S---------
----------------------------------------------------------------S---------------
----------------------------------------------------------------------------SSSS
SSSSSSS-----------------------------S-------------------------------------------
----S----S----------------------------------------------------------------------
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---S--------S-------------S------S----------------------------------------------
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--------------------------------------------------------------------S-----------
-----------------------------------------------S--------------------------------
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-----S-----------------------------------------------S-S------------------------
S---------------------------------------------S---------------------------------
------------------------------------------------------------S-------------S-----
----------------------------------------------------------------S----S----------
------------------------S----------------SS--------------------S----------------
----------------------------------------------------S---------------------------
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-----------------------------------------------------SSSS-----------------------
-----------------------------------S--------------------------------------------
-----------------------------------------------------------------S-------------S
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-------------------S---------S--------------------------------------------------
---------S-----------------------S----------S--------------------------S--------
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---------------------S----------------------------------------------------------
-S-----S------------------------------------------------------------------------
-------------------------------------------------------------------------S------
------------------------------S-----------------------SSS-----------------------
------------------------S------------------------------------S------------------
---------------S----------------------------------------------------------------
---------S------S----------------------------------------S----------------------
-------------------------------------------------------------------SS-----------
----------------------------------------------------------S---------------------
-----------------------
>forward_485
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-----------------------------------------------------------------ATCTGCACTTTCCCG
CAATG---------------------------------------------------------------------------
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>reverse_2170
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---------AGCAATGATGGAGGCGAAGA---------------------------------------------------
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