>input_sequence_63302
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-------------------------------------------------------------------ATGACGCCCCCCT
TCCGCCCGTCCCCCTCCTCCACCGCCCCCGCCCCCCGCGGCTGCGGCGGCGAGCGCTGCGCCTCCGGCCGCGAGGCCTGG
CCGCTCCACCACGTCCGCCACAACGACGTCTTCTGCCGCCTCTGCTCCTCCTGCGTCCTCCTCTACCACCCCGCCTCCTT
CTGCTCGGCCTGCCTCCTCCTCCTCCACACGGACGCT---GCC---GCCGCCGCCGCCGCCGCGCAGGACCCCCACTTCG
ACCCCGCCGTCGCCCCGCCGGGCCCCACCGCCGAGTGCTCCAATTGCGGCCTCTTCGTCGCCCATGTCACCTGCATCCCC
GACCCCGTCTCCTTCGTCTGCCCGCCGTGCGCCGCCGAGGCCGAGGGCCGGCCCTTCACCTACGCGCCCGCCGCCCGCCG
CGTGATGGACGAGCGCGCCGCGCGGATCCTCCTCATCGCGGCGCGCCTCGCGCACGAGTCCATCGGCCGCGCTGCCGCTG
CCGCCCGCGAGGAGGCGGAGCGCCGCGTCCAGGAGGCGGCCGTCGCGCGGAAGCGCTCGCGGGAAATGCTGGACGCTGCC
TTCCGGGCGCTCGAGGAGGAGGCCAGGGCCGCCAAGATCAAGGAGGAGGAGGCGGCGGCCAGGGAGGCCAAGAACAAGAA
GGAGAAGCCCGCCGCGGCCCAGCCGCCCAAGAAGAAGACCCCTAAGAGCAGCGAGTCGAGCAGGGACAGGGATAAGATGC
TCAAGTTCAATGCCATGCAGCAGCCGGCGCTGGCATTTGCTGCGGCAGCCGCCGCCGCAGCCAGCTCATGCGGCAGCTCA
ATGCCACCAT------------TGTCAACCCCACCACCCAAGGAGGACAAGAAGCCGATGAAAC---AGGAGGAGCAAGG
TGAATAACTACTGGAATACTTCAAATGGGCA-GCCAATTGTTCTGTTCAATAATCTGTA--ATCATTCTTGCAGGTTCAA
CGGACACAGTAGCAGATGAAGATGTGAAGGGGTTGTTTGGGACCTTGCAATCATAA------------------------
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>chr1B_1_TraesCS1B01G098100
CCTAGGGGCGGCGAGGGGGCTTGGGAGATCAAGAAACTGCGTCACTTGCTGGCTGCCAATGTCTGCTAAAACAAGATTAT
CAATAAAGTGAGGCCCTGATGCAACCAATTAGTCAAGTAACACTTTTTCAGAAGAATGAAAAACAACCTGAGGGTGACAA
AATCGTTCGAAATAAGACATTGACGGATGCAAGGCGTAGTTTCCTACCATTAGTCGCGTTAGTTACCGCACCGTCACCAC
GGAGAACGGCTGCACGATGCAACCTGCAATTGCAATCACCAGCAGCCGCTATGTCGTTTCCTCGGTGCCTTGTGTACCTG
TCACCCGCACTTGTCGCCGCTGGCGAGCCTCCCCGGCCATGTGTGATTGCCACGCGGTAGTGAAGGCGCCGCGGCCTCAT
ATGTGAGCGATTGCACGAGGAGAGAAGGAGGAGCGGGGGACCGGAGATGGCCGGAGAAGGAGGTGCGGGGCGGAGCCGGG
GGAAAGGGGATCTGGCGAGGGCCGCGAGGCGAGGTCGGGGTGGAGGAAAATCTGCGTCCCGATAGGAATCTGGGCAACAC
GCGGAAGTTACGGGGTGATTTATTTTATTTCCTTATTTACAAAGGCAAGACTACTCCCGAGCGTCAGATTTGGAGTAAAT
CAACGATGTTCGGCTGGTCTGGCGATGGAGTCTTATCAGACTATAGACACAAAGCGTTTCCCTATAAGTTTCATGATAAA
AGAAAGCGAGTCGATCTACCGATACTGAAGCTTTCATGCAGCCCGTTCCA-----CTCCTCCCACTCCACCGGCAATCCA
A--------GCCTCCTCCCACCTAC---CTCCTTTGCTCGTGGTACCCCGTCTGATTCTGAACACCAAATTCCCCTAAGG
AAAGAAAAAAGGA-AGAAAAATCTCTCACCGAGGAGCCGTTCGGGGTTCGGCCGAGCCTTTCCTCCCTCAGAAACCCTAA
TCT----------TCCCCTCTCCTCCCGTCTCTCCTCCCTTCCCCTGTAAAGCCGCCGCTCGCAGCGATGACGCCCCCCT
TCCGCCCGTCCCCCTCCTCCACCGCCCCCGCCCCCCGCGGCTGCGGCGGCGAGCGCTGCGCCTCCGGCCGCGAGGCCTGG
CCGCTCCACCACGTCCGCCACAACGACGTCTTCTGCCGCCTCTGCTCCTCCTGCGTCCTCCTCTACCACCCCGCCTCCTT
CTGCTCGGCCTGCCTCCTCCTCCTCCACACGGACGCT---GCC---GCCGCCGCCGCCGCCGCGCAGGACCCCCACTTCG
ACCCCGCCGTCGCCCCGCCGGGCCCCACCGCCGAGTGCTCCAATTGCGGCCTCTTCGTCGCCCATGTCACCTGCATCCCC
GACCCCGTCTCCTTCGTCTGCCCGCCGTGCGCCGCCGAGGCCGAGGGCCGGCCCTTCACCTACGCGCCCGCCGCCCGCCG
CGTGATGGACGAGCGCGCCGCGCGGATCCTCCTCATCGCGGCGCGCCTCGCGCACGAGTCCATCGGCCGCGCTGCCGCTG
CCGCCCGCGAGGAGGCGGAGCGCCGCGTCCAGGAGGCGGCCGTCGCGCGGAAGCGCTCGCGGGAAATGCTGGACGCTGCC
TTCCGGGCGCTCGAGGAGGAGGCCAGGGCCGCCAAGATCAAGGAGGAGGAGGCGGCGGCCAGGGAGGCCAAGAACAAGAA
GGAGAAGCCCGCCGCGGCCCAGCCGCCCAAGAAGAAGACCCCTAAGAGCAGCGAGTCGAGCAGGGACAGGGATAAGATGC
TCAAGTTCAATGCCATGCAGCAGCCGGCGCTGGCATTTGCTGCGGCAGCCGCCGCCGCAGCCAGCTCATGCGGCAGCTCA
ATGCCACCAT------------TGTCAACCCCACCACCCAAGGAGGACAAGAAGCCGATGAAAC---AGGAGGAGCAAGG
TGAATAACTACTGGAATACTTCAAATGGGCA-GCCAATTGTTCTGTTCAATAATCTGTA--ATCATTCTTGCAGGTTCAA
CGGACACAGTAGCAGATGAAGATGTGAAGGGGTTGTTTGGGACCTTGCAATCATAACGTT-GGGGTACCACAATCGCCCA
TCTGTTTGATCTGCCTCCATTTGTTTGTTGTTGCTAAGTGAACCGACAAGGAGGCTTTGCTTGAATTTAATGAATCCCTA
CCCCGGAACCTCCTCACCGTAAATTCTAGTCCTGTCATGTTAGATGATCCTCTTATTTATGTAGCTGCTTCACCTTCGTG
TCCT-TTCGTTATTATACTCTATTGGATGATAATTTATCGCAATCAGTCTTCAGACTTGTAGACCGAGGAAACCTAAGCG
AGTCGAAACTTTATTATTCCATATA-CTACACAGTTCTTTCTTTTTTGTCATTTGGCATAATCTTGTTGAATGTGCAAGT
TCCTCTGCAATAATATTGTGTAAATGCACCAACTGGTCGTAAT---CTTTATCCCCATTCAGTACACAGTGGAAAATCAA
AGAAGTGGTGTGATAGCAGATTGAAAATTACCCAAAGCATAGTACCATTTCCTGAACATGACTTGGTATAATTGCAGGGT
GGATATTTTCCAAAAATGAAATGTGTAGGTCTTGATACCCTTGCACAACTCATCCA---CCTTTTCTTGCACAACACATG
CAAACTCTGTATTTGAGCACCCTTCCACATGTGCTAAATTTTGCTAACTGTTTACATGATTCTCCATGCC-------TCA
TGATCGAGCATGTCTATTGTTTGTTGTTTGTGTAGTTCTAATATAGTCCTACCTGATATGCTCATAAATGATGATGTTAC
TCT---------------------------------TATGGGTGGCTTCTGGAATAAAATTTTGGCAGTCATCCATAAGC
CCCAAAAGAACTGGCCCTTACTTTGCTTAACTAAACTGTTGGTGAGGCTCAAATCGTATTGAGGCCCCACAATCATATAT
CCTGGTGCCACCTTTCCGCAGCAGCTTCACCTATGCTGCTCCCTCGGTAAGCTGACCATTGGTGTGGCATTGTCCTGTCA
CCATTGCT-GCCACATGAGGCAAGAGGCATGCCATAGAGATCG--ATTTT---TTTTTTTTGAAATCAGTG
>chr3B_3
--TAGGGGCGGCGAGGGGGCTTGGGAGATCAAGAAACTGCGTCACTTGCTGGCTGCCAATGTCTGCTAAAACAAGATTAT
CAATAAAGTGAGGCCCTGATGCAACCAATTAGTCAAGTAACACTTTTCCAGAAGAATGAAAAACAACCTGAGGGTGACAA
AATCGTTCGAAATAAGACATTGACGGATGCAAGGCGTAGTTTCCTACCATTAGTCGCGTTAGTTACCGTACCGTCACCAC
GGAGAACGGCTGCACGATGCAACCTGCAATTGCAATCACCAGCAGCCGCTATGTCGTTTCCTCGGTGCCTTGTGTACCTG
TCACCCGCACATGTCGCCGCTGGCGAGCCTCCCCGGCCATGTGTGATTGCCACCCGGTAGTGAAGGCGCCGCGGCCTCAT
ATGTGAGCGATGGCACGAGGAGAGAAGGAGGAGCGGGGGACCGGAGATGGCCGGAGAAGAAGGTGCGGGGCGGAGCCGGG
GGAAAGGGGATCTGGCGAGGGCCGCGAGGCGAGGTCGGGGTGGAGGAAAATCTGCGTCCCGATAGGAATCTGGGCAACAC
GCGGAAGTTACGGGGTGATTTATTTTATTTCCTTATTTACAAAAGCAAGACTACTCCCGAGCGTCAGAT-----------
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>chr1D_706
AAGTTTC-------------------------------------------------------------------------
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---------------------------------------------------------------------------ATGAA
AAAAAGTGAGTCGATCTACCGAGCCTGGAG------------CCCGTTCCACTCCCTCTTCCCACTCCACCGGCAATCCA
A--------GCCTCCTCCCACCTACTACCTCCTTTGCTCGTGGAACCCCGC------CTGAACACGAAATTCCCGTAAGG
AAAGAAAAAAGGAGAGAAAAATCTCTCCCCCAGGAGCCGTTCGG-------CCGAGCCTTTCCTCCCTCAGAAACCCTAA
TCC----------TCCCCTCT------------CCTCCCTTACCCTGTAAAGCCGCCGCTCGCCGCGATGACGCCCCCCT
TCCGCCCGTCCCCATCCTCCACCGCCCCCGCCCCCCGCGGCTGCGGCGGCGAGCGCTGCGCCTCCGGCCGCGATGCCTGG
CCGCTCCACCACGTCCGCCACAACGACGTCTTCTGCCGCCTCTGCTCCTCCTGCGTCCTCCTCTACCACCCCGCCTCCTT
CTGCTCCGCCTGCCTCCTCCTCCTCCACACGGACGCCGCCGCC---GCCGCCGCCGCCGCGGCGCAGGACCCCCACTTCG
ACCCCGCCGTCGCCCCGCCGGGCCCCACCGCCGAGTGCTCCAATTGCGGCCTCTTCGTCGCCCATGTCGCCTGCATCCCC
GACCCCGTCTCCTTCGTCTGCCCGCCGTGCGCCGCCGAGGCGGAGGGCCGGCCCTTCACCTACGCGCCCGCCGCCCGCCG
CGTGATGGACGAGCGCGCCGCGCGGATCCTCCTCGTCGCGGCGCGCCTCGCGCACGAGTCCATCGGCCGCGCCGCCGCCG
CCGCCCGCGAGGAGGCGGAGCGCCGCGTCCAGGAGGCTGCCGTCGCGCGGAAGCGGTCGCGGGAAATGCTGGACGCGGCC
TTCCGGGCGCTCGAGGAGGAGGCCAGGGCCGCCAAGATCAAGGAGGAGGAGGAGGCCGCCAGGGAGGCCAAGAACAAGAA
GGAGAAGCCCGCTGCGGCCCAGCCGCCCAAGAAGAAGACCCCTAAGAGCAGCGAGTCGAGCAGGGACAGGGATAAGATGC
TCAAGTTCAACGCCATGCAGCAGCCGGCGCTGGCATTTGCTGCGGCAGCCGCTGCCGCAGCCAGCTCAATGCCACTGTCG
ACG---CCAT------------TGTCAACCCCAACACCCAGGGAGGACAAGAAGCCCATGAAACTGGAGGAGCAGCAAGG
TGAATAACTACTGGAATACTTCAAATGGACAGGCCAATTGTTCTGTTCAATAATCAGTATTATCATTCTTGCAGGTTCAA
CGGACACAGTAGCAGATGAGGATGTGAAGGGGTTGTTTGGGACCTTGCAATCATAACGTTGGGGGTATCACAATCGCCCA
TCTGTTTGATCTGCTTCCATTTGTTTGCTGTTGCTAAGTGAACCG-CAAGGAGGCTTTGCTTGAATTTAATGAATCCCTA
TCCCGGAACCACCTCACCGTAAATTCTAGTCCTGTCATGTTAGACGATCCTCTTATTTATGTAGCTGCTTCACCTCCGTG
TCCTATTCGTTATTATACTCTATTGGATGATAATTTATCGCAATCGGTCTTCAGACTTGTAGATCGAGGAAACCAAAGCG
AGTCAAAACTTTA-TATTCCATATAACTACACAGCTATTTCTTTTTTGTCATTTGGCATAATCTTGTTGAATGTGCAAGT
TCCTTTGC---AATATTGTGTAAATGCACCAAGTGGTCGTAATAATCTTTATCCCCATTCAGTACACAATGGAAAATCAA
AGAAGTGGTGTGATGGCAGATTGAAAATTACCCAGAGCATAGTACCATTTCCTGAACATGACTTGGTATAATGGCAGGGT
GGATATCTTCCAAAAATGAAGTGTGTAGGTCTTGACACCCTTGCACAACTCATCCAAATCCTTTTCTTGCACAACACATC
CAAGCTCTGTATTTGAGCACTCTTCCACATGTGCTAAATTTTGCTAACTGTTTACATGATTCTCCATGCCTCGTGA----
---TCGAGCATGTCTATCGTTTGTTGTTTGTGTAGTTCTAATATACTCCTACCTGATATGCTCATAAATGATGATGTTAC
TCTGGAAGTCTTGCTTAGGCCAGTTCTTTTGGGGCTTATGGGTCGCTTCTAGAATAAAATTTTGGCAGTCATCCATAAGC
CCCAAAAGAACTGGCCCTTACTT-GCTTAACTAAACTGTTGGTGAGGCTCAAATCGTATTGAGGCCTCAC--------AT
CCTGGTGCCACCCCTCCGCAGCAGCTTCACCTATGCTGCTTCCTCGCTAAGCTCACCATTGGTGTGGCACTGTCCCGTCA
CCATTGCT-GCCACATGAGGCAAGAGGCATGCCATAGAGTTCAGTATTTTTTTTTGGGTTTGAAATCAGTG
>chr1A_706
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-----------------------------------------------------------------AAGTTTCATGGGAAA
AAGAAGCGAGTCGATCTACCGAGC-------TTTCATGCAGCCCCGTTCCACTCCCTCTTCCCACTCCACCGGCAATCCA
ACTATCCAAGCCTCTTCCCACCTAC---CTCCTCTGCTCGTGGAACCCCGT------CTGAGCACGAAATTCCCGCAAGG
AAAGAAAAAAGGAGAGGAAAATCTCTCCCCCAGGAGCCGTTCGG-------CCGAGCCTTTCCTCCCTCAGAAACCCTAA
TCCTCCCCTCCCCTCCCCTCT------------CCTCCCTTCCCCTCTAAAGCCGCCGCTCGCAGCGATGACGCCGCCCT
TCCGCCCGTCGCCCTCCTCCACCGCCCCCGCCCCGCGCGGCTGCGGCGGCGAGCGCTGCGCCTCCGGCCGCGACGCCTGG
CCGCTCCACCACGTCCGCCACAACGACGTCTTCTGCCGCCTCTGCTCCTCCTGCGTCCTCCTCTACCACCCCGCCTCCTT
CTGCTCCGCCTGCCTCCTCCTCCTCCACACGGACGCCGCCGCCATCGCCGCCGCCGCCGCCGGGCAGGACCCCCACTTCG
ACCCCGCCGTCGCCCCGCCGGGCCCCACCGCCGAGTGCTCCAATTGCGGCCTCTTCGTCGCCCATGTCGCCTGCGTCCCG
GACCCCGTCTCCTTCGTCTGCCCGCCGTGCGCCGCGGAGGCCGAGGGCCGGCCCTTCACCTACGCGCCCGCCGCCCGCCG
CGTGATGGACGAGCGCGCCGCGCGGATCCTCCTCGTCGCGGCCCGGCTCGCGCACGAGTCCATCGGCCGCGCCGCCGCCG
CCGCCCGCGAGGAGGCCGAGCGCCGCGTCCAGGAGGCTGCTGTCGCGCGGAAGCGCTCGCGGGAAATGCTCGACGCGGCC
TTCCGGGCGCTCGAGGAGGAGGCCAGGGCCGCCAAGATCAAGGAGGAGGAGGCGGCGGCCAGGGAGGCCAAGAACAAGAA
GGAGAAGCCCGCCGCGGCCCAGCCGCCCAAGAAGAAGACCCCTAAGAGCAGCGAGTCGAGCAGGGACAGGGATAAGATGC
TCAAGTTCAATGCCATGCAGCAGCCGGCGCTGGCATTTGCTGCGGCAGCGGCTGCCGCAGCCAGCTCAATGCCGTTGTCA
ACG---CCATCGTCGACCCCACTGTCAAACCCAACACCCAAGGAGGACAAGAAGCCCATGAAACTGGAGGAGCAGCAAGG
TGAATAACTACCGGAATACTTCAAATGGGCA-GCCAATTGTTCTGTTCAATAATCAGTATTATCATTCTTGCAGGTTCAA
CGGACACATTAGCAGATGACGATGCGAAGGGGTTGTTTGGGACCTTGCAATCATAACGTTGGGG-TACCAAAATCGCCCG
TCTGTTTGATCTGCTTCCGTTTGTTTGTTGTTGCTAAGTGAACCG-CAAGGAGGCTTTGCTTGAATTTAATGAATCCCTA
TCCTGGAACCACCTCACCGTAAATTCTAGTCCTGTCATGTTAGATGATCCTCTTATTTATGTAGCTGCTTCACCTCCGTG
TCCTATTCCTTATTATACTCTATTGGATGATAATTTATCGCAATCGGTCTTCAGACTTGTAGATCGAGGAAACCTAAGCG
AGTCAAAACTTTATTATTCCATATAACTACACAGTTCTTTCTTTTTTGTCATTTGGCATAATCTTGTAAAGTGTGCAAGT
TCCTTTGC---AATATTGTGTAAATCCACCAAGTGGTCGT---AATCTTTATCCCCATTCAGTACACAATGGAAAATCAA
AGAAGTGGTGTGATGGCAGATTGAAAATTACCCAGAGCATAGTACCATTTCCTGAACATGACTTGGTATAATGGCAGGGT
GGACATTTGCCAAAAATGAAATGTGCAGGTCTTGATACCCTTGCACAACTCATCCAAATCCTTTTCTGGCACAACACATG
CAAACTCTGTATTTGAGCACTCTTCCACATGTGCTAAATTTTGCGAACTGTTTACATGATTTTCCATGCCTCATGAGTCA
TGATCGAGCATGTCTATTGTTTGTTGTTTGTGTAGTTGTAATATACTCCTACCTGATATGCTCATAAATGATGATGTTAC
TCTGGAAGTCTTACTTAGGCCATTTTTTGGGGGGCTTATGGGTGGCTTCTAGAGTAAAATTTTGGTAGTCATCCATAAGC
CCCA-----------CCTTACTT-GCTTAACAAAACTGTTGGTGAGGCTCAAATCGTATTGAGGCCCCAC--------AT
CCTGGTGCCACCCCTCCGCAGCAGCTTCACCTATGCTGCTTCCTCGCTAAGCTCACCATTGGTGTGGCACTGCCCCGTCA
CCATTGCTGGCCACATGAGGCAAGAGGCATGCCATAGAGTTCAGTATTTT---TTGTGTTTGAAATCAGTG
>SNPs
SS------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------S-----------
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----------S------------------------------------------S--------------------------
-----------S-----------------------------------------------S--------------------
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-------------------------------------------S-------------------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
-S--------------------SS---S--S-------------SS-S-S--------S---------------------
-------------------------------------------S-------SSSSSS--------S--------S-----
---------------------------S--S-------------SSSSSSS-----------------------------
--S------------------SSSSSSSSSSSS-----------------------------------------------
-------------------------------------------------------------------------S------
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------S-----------------------------S-------------------------------------------
--------------------------------------------------------------------S-----------
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----------------------------------S-------------------------------------S-----S-
-------------------------------------S--------------------------------------S---
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----------------------------------------------------S---------------SSSSSSSSS---
-S-SSS---------------------------S----------------------S---------------S-------
-------------------------------------------------------S------------------------
-------------------S------------------------------------------------------------
--------------S------------------------------S----------------------------------
S---------S----------------------------------------------------------------S----
---------------------------------------------S-----------------S----------------
----S---------------------------------------------------------------------------
----S---SSS---------------------S-----------------------------------S-----------
--------------S-------------------S-------------------------------------S-------
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--------------------S-----------------------------------------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------S-----------------------------
-----------------------S----------------------------------------------SSSSSSSS--
------------SS--------------------------S-----S------S---------------S-----S----
---------------------------------------S--S------------S-S-------------
>forward_658
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------------------------------------------------------------------------------AT
CAACGATGTTCGGCTGGT--------------------------------------------------------------
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>reverse_1833
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------------------------------------------------------------------------GCAGCTCA
ATGCCACCATTG--------------------------------------------------------------------
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>forward_988
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--------AATCTTCCCCTCTCCTCCCG----------------------------------------------------
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>reverse_1845
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----CACCATTGTCAACCCCACCA--------------------------------------------------------
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>forward_1349
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--------------------------------------------------CTCTTCGTCGCCCATGTCA-----------
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>reverse_2304
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---------------------------------------------------------------CCGAGGAAACCTAAGCG
AGT-----------------------------------------------------------------------------
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