>input_sequence_63292
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---------------------TCAGAGCCAACCAACAGGGCGACCAAGCTCAATTATCTCA--------GACTACTCAGC
TACCGCCTGTCCGCTCTC-AGCTCCT------TTGAGCCCTC--ATCGATA----------CTCTTCATGGCGAGGGTTC
ACCCCAACATGGTGCCCGCCCCGGGCGCCGTCGGCGAGGCGCCGTGCGCGCCGGCCAGCTCCGC---GGTGGAGGAGCCG
ACGACGCTGACGGTGTGGCGCAAGTCCCTCCTGTTCGACTGCAAGGGGTTCACGGTGTTCGACGCCAAGGGCAACCTGGC
CTACCGCGTCGACAGCTACGCCTCGGAGACCGGCGACGAGGTCGTCCTCATGGACGCGGCTGGCCGCCCCGCCTTCACCG
TTCGCCGAAAGCGGT---TCAGCTTCCAAGGCGAGCAGTGGCTCGTCTTCTCCGGCGAGGAGACGCG---GCGGCCCGTG
TACGCCGTCAGGCGCA---------------GCGGCCGCGGCAAGACGATGGCGCACGTGACGGCGTGCG------CCGG
C------GCCGGGCCGTCT------TACGAGGTGGAGGGGTCGTACGCGCGGCGGAGCTGCGTGGTGTACGACGGCGAGC
GGCGCGCGGTGGCGGAGATCAGGCCGAAGGAGGTGGTCGGCACGGACGTGTTCCGGCTGGCGGTGCAGCCT---GGAGTC
GACGTGTCGCTGGCCATGGCCGTGGTGGTGGCGCTCGAGCAGATGTTCTCCAGACCGTCGCTCCTCAGGAGCTGGTCCAC
ATAGATTATATAGTTAATTATAATTTGTTTGT---TCATCGGAGC----ACGTCTCAGTTTAGTCAAGC---TTATAGCT
TTTTTTGCCCCATGCACTCAGTTTGGGG--TTGGAATTGAGACCGTGAGAGTC------GA-TCGATGGATCTTTGTGTG
TGGGCATGAGAGCAAGCCGATCTGTTCGATGATGCCCTCCAAATCAATCACATATAC-----TACGTACTACTATAGTAT
GGCCAAATCATGTCTTTT-GGTCTGTCGTTGTGTATATATTCTCTCTATA-AGAGAGTGAAGGAA------TATAAACAG
TTCATTTGTAT---------------------------------------------------------------------
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-----------------
>chr3D_1_TraesCS3D01G334200
TTTTTTAAAACATG-AATATTTGCATTTTCAAAAATTGTACAGAAATTTCAAAAAAATGTCCGTGTCTTTCAAAATTGTT
TGTGTTTTGACATTCTGAGCAACTTTGAAAGATACAACATTTTT-TTGAAATTTATGTAGAT---TTTTTTTTAAATGTG
GATC-------TTTGTGAGCAAAATTTTAAAAAGC--AAACACTTTTTTTTTTGAAATTTTGAATAATTTTTTAAAAACG
AAAATATTTTTGT-AAACTAGAAAAATGAAAAGGAACAAAAACAAACAGAAAAAATGAAATAGGT-GGAAAAGACCAGTT
TGACAA-TGGTCCAGCCCAGCAAAACCAGGGGCTTCCGTGAATTGAAGAAGAAGAAAAGAAAGAAAGGAA--CTAAATTG
GCACTAGTGTTAAGATGTCCTATTTGGTTAGTGT----------------------------------------------
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-------GGTTCTCTCTAAACAAAGAGGTCATAAGTTCAATTCACGTCGCCCTCCGTTGATTTGTTAAGGAGGATT--AC
CGAAGTAAAAGTTATCTTTCTTGGGAAGAGGTTGATTTCATTTGAATATTTGATCACACCTAATGTGAGATCCTATACTA
GTCTACCCTTGAACTCTGTCTGCTGGCAGAAAATTCCTCCTAATTTATTATGCAGCAGCATTCTCAAGTTCTTGTGAGGG
TAACTTCGGTCTTTGCATCA---GCAGCCGAG------------------------------------------------
----------------------------------------------------------------TTTGTTATTTTTTTAG
TACTCTCTCCGTTCAA----------------------------------------------------------------
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-----------------------------AAATACTTGTTATTGAAATAGATGTATCTAGATGTATTTTAGTTCTAGATA
CATCATTTTCATCCATTTTAATAACAAATATTTCCGGATGGAGGGAGTAG---TAGCAAGCAATCTATGATAAGATTGTT
AATTAATTGA-GGAAGAGGTCGTTAAGCAGCAGCCCATGTCACTTGTGTCCCCACGCACGTCAGAGCAACATGCCTTTGC
TT------TTTCTGCCG-GTGGACAGTTTCTCC-----GGCCGGTCCATCATAGAGCGAGCGAGACCTGTATATAACCAC
CGCC---CACGGACCCGACCCTCAGAGCCAACCAACAGGGCGACCAAGCTCAATTATCTCA--------GACTACTCAGC
TACCGCCTGTCCGCTCTC-AGCTCCT------TTGAGCCCTC--ATCGATA----------CTCTTCATGGCGAGGGTTC
ACCCCAACATGGTGCCCGCCCCGGGCGCCGTCGGCGAGGCGCCGTGCGCGCCGGCCAGCTCCGC---GGTGGAGGAGCCG
ACGACGCTGACGGTGTGGCGCAAGTCCCTCCTGTTCGACTGCAAGGGGTTCACGGTGTTCGACGCCAAGGGCAACCTGGC
CTACCGCGTCGACAGCTACGCCTCGGAGACCGGCGACGAGGTCGTCCTCATGGACGCGGCTGGCCGCCCCGCCTTCACCG
TTCGCCGAAAGCGGT---TCAGCTTCCAAGGCGAGCAGTGGCTCGTCTTCTCCGGCGAGGAGACGCG---GCGGCCCGTG
TACGCCGTCAGGCGCA---------------GCGGCCGCGGCAAGACGATGGCGCACGTGACGGCGTGCG------CCGG
C------GCCGGGCCGTCT------TACGAGGTGGAGGGGTCGTACGCGCGGCGGAGCTGCGTGGTGTACGACGGCGAGC
GGCGCGCGGTGGCGGAGATCAGGCCGAAGGAGGTGGTCGGCACGGACGTGTTCCGGCTGGCGGTGCAGCCT---GGAGTC
GACGTGTCGCTGGCCATGGCCGTGGTGGTGGCGCTCGAGCAGATGTTCTCCAGACCGTCGCTCCTCAGGAGCTGGTCCAC
ATAGATTATATAGTTAATTATAATTTGTTTGT---TCATCGGAGC----ACGTCTCAGTTTAGTCAAGC---TTATAGCT
TTTTTTGCCCCATGCACTCAGTTTGGGG--TTGGAATTGAGACCGTGAGAGTC------GA-TCGATGGATCTTTGTGTG
TGGGCATGAGAGCAAGCCGATCTGTTCGATGATGCCCTCCAAATCAATCACATATAC-----TACGTACTACTATAGTAT
GGCCAAATCATGTCTTTT-GGTCTGTCGTTGTGTATATATTCTCTCTATA-AGAGAGTGAAGGAA------TATAAACAG
TTCATTTGTATACGGCTCTCAGCTTCCGAGCCTCGAGATAAC----ATCTTGTTGTCTTGTACAGAGCGCTATCTCGATC
TTTTTCATG------------CGTATTTCGCCGAGATCACACGATTCGCGTTACGTGGCTTGCGAGTTTCCGGCATCTTT
GATTCTCGAGCGAAAGGGTCGGCGAGATAGCCAGAGAGATCTAGACAGGGACACCGTTTCTCGTCGTTTCTTCCGCTTTC
CGTGCTCCGTGGAAACATGGAATCATATTTTCGGAAACATTTCCGGCTGCGT------TTCCATGGGGTGTGGACTGGCA
GGATC--GACCGCGACTCGTCCTCATCCTGGGACCATTTGCCGCCCTGGAGAAGA----------GAAGAGACGTGCACA
CCTGGGGTCTGAAATTCAGTTAGGAACGAGAGGAGAGGAAGCCACTTTTTGGGTACCTGGCGCGTCAGTCCAGCTGGGGG
CTGTGGATGATACGTGTGCGATCGGCTCTGAATTAATGGAAGCTATCCAT----CTGCGCCGTCCAGAACTTGCGAAGGA
CAATCCGTCTTGGTTTCTTGTGTTGGTTGTGTTCTTACGATGCAGGTGTTTGCCTGTGGCTGGCTCACTGAATTTTTTGC
CCGTGAGTCATGTGC------TGTGAGTAGTGGTCTGTCCTTCTCCTATAACCGATTTTTTTTCTTTTTTTGCGGGAGCT
CCTATAACCGACTCTGACGTTCGGGTTCGGCAACAATCGCTGTTTTTTCACGAAGCACGGCTGAAACCGTATGAGCATAG
AAAT-TAGTGAACAAAAATATCTTAGGGAGAACTATTATTAGTGAACAAAAGTATTCTAGCTTTGTACCGCTTATTGCGG
GCTTTAGCAAGC-AATCATCCACATGCCTCGCGCCCCTCCGCCCAACTGGACGGCCGACCGTCTACTCGGCCGAGCAGCT
GCTTAACGTCAAAGTTCAGTTTCCGTGAGGTGCAGCGTGTTTTTTTTAAGGTAATGTTAACCAGCTGACGTTCTCTGAGA
GAGGGGTGGCAAGCAAA
>chr3A_1
TTTTTTAAAATACAAAATATTTGCATTTTGAAAAATTGTACATAAATTTCTGAAAAATGTCTGCCTCTTTCAAAATTGTT
TGTGTTTTGACATTTTGAGCAACTTTGGAAGACATAGCA-TTTT-TTGAAATCTCTGTAGAA---TTTTTTGAAAATGTG
AACAATTGTATTTTATGAGCAAAATTAGAAAACATTAAACAT----GTTTACTGAAATTTTGAATTGTTTTTAAAAAATT
CAAATATTTTTTGAAAACAAGAAAAATGAAGATAAACAAACACAAACAGAAAAAAATAAAATAC-GGGAAAAGACCAGTT
TGACAA-TATGCCAACCCAGCAAAACCACGGGCTTGTGTGAATTGACGAAGAAAAAAACAAAGAAAAAAAAACTAAATTG
GCA----TGTTAAGATGTCCTAGTTGGTTAGTGTAACATCCCAAATTTTCAATTTGGAATGTTATACATTAGGTCATCAT
GCATATCATATTTTATTTTGCTTTTGGTTTTGATCCTAGAAAATCCTAAGCAACTCAAGGACCCACAGAGAGAGTTGGGG
ATTTTGTTATTTACATATTTGAGTTTTCTCAAATTATTTAAATAGGATCATTTAATTTTATTTATTTTATCATCAATTAT
TTCTATTACAAAAATATGAGAGAGGAAATAAAATGACTTTTCCAAAATATAGAAATATTGAGGATTTAATAAAAAAATCA
AATAAGTTTTATTTCGGAGTTTTTCGGTATTTTTATTTGAATTTAAGAAAAATGCGCGTTTTTCAAAATTGCATTTAGGG
CCCAGATAAATTTTCACTTTATCGGGCTTGATTTTAAAAACCCGGCAAAATTTATTTCATGATTTTTGGAATCCGTTTAG
TATTTCTTTTTATTTTTCTTCCGAGCAAAATGATTAAAAAAAACACGGAACCGACTATGTGTCGTGCTCGGCCAGGACAC
CGCCGGCCGAGGCCTTTATAAGCCGCCGCCCCGGGGCCCGAAAGCCCAGCCGCCCCAGCCCCGAAACCCTAACCCTAGCC
GTGCCCAGCCGCCGCCGCCGCCGCCCCGCCGCCGATCCGCCGGAGCAGCGCCCCGCCCGAGGTTCACCGTCGCCTCGACT
TCCGTGCCGTTTTAAAAAAAATATGTCCGTCGTTTTTTCTTTTTCGTCGGATTTTTCCGCGGTTATTTTCTGATCACGAT
TTCTGATCCGATTTTCGTTTTAGTATAACTTTTCGCTCGTTTATCGGAATCAGGCGGTTCAAGCGCCTGGAATTTCGTCT
CGAAACCCTCTTTTCGAATAATCAACTTAAACATATTTTTTCTACTGTAAAATTTGCCCTAGATCCAGATTACTAGAACG
AAGTCATTTTCTTTCGCCGTTTGATTTCTTTTGCTTCGTTCGATTAATTCTTTTTGCAAACCAGGGTTCTTAAGTTGAAC
TTTCTGGTTAGATCTTCTATTTGAGTTTTACCTGTGCATTAGATGAGTACTTATTGTATGCTTGTTTGATTGTCTGCGAT
AAAATACCTGGAGTGCGCCGCCTGTTACTTCGAATCTCTAGGTTTCGCGGATATCAGCAAGGCAAGTAACACTTTAATCA
TACATTTTTCTACAACCTAGTTTTATTGCATTAGATCACCTCACACATTGCATGATTAGGATCTAATTAAATTGTGGGAT
GAGGAGTAGATGAGGTAGTACCTATTACCTATTTATTATCAAACCTTTGGGAGTTACTTCTATGTTTGCTTAAGCCATGC
TATGCTAGTAGACGTGGATTGGGTGAGTGATATCCATGACAGATGTGAGATTGTTAATTAAGGGTTTATCTAAGGTGGCA
ACCTAACACACATCTGGGTGAATTGAGGCACCTAGGGTTTCCAGGACTTGCCTGTTTTCTTTGGACCGCCACCCAGGCTC
AAAGGGATCATGAGATTATTCATACTAGAAACTTCCGTGTGCAGCCACAAGCCATTATGGGCTCTGGCATAGTTGATTAA
GTTGTGCGAACTCTTACAGTGGTAGACTAGCAGATGTAGGGAATGTATGTGGTACGGTCTACCCGATCGTAAGGTGCTAG
CGCTTCTGAAAGACTATGGCTCGGTCATCCGTTTCTCAAACACCATGTAGTGCGAGAAAACAAACGGAGGCGATCGAGTC
TTGTGGGGAAAAGTGCGCAAACCTCTGCAGAGTGTAACAAACTAATCATGGTTAGCCGTGTCCCCGGTTATGGACATCTT
GAGTATCTAGTACCTGGATTTTCATGTGAATCTCAACATGTTACTCTAAAATTAATTTTGTTGGGTTTAATGATTTTTAA
TTGGGATTGAGAATGCTGTCAACCATTCTCAATGTTTAACAACCACCATGATAGTAATTAATTTATTCCTTTGAAGTAGG
GAAAAATTGGCTTTACGCAAAACTATAACCATAGAGTTTTTCCACCAGCCAAATATGCATGTAGTGATAGCTTCATCATT
CCCCTCTATGGTGTGAATTTGCCAGTACATTCAATGTACTGACCCTTTGTGGCTGCAACGTCTCATGTTGCAGGATTTCT
TACGACGAGTAAGTGATACGTTAGGGTTATGATTTCTACACTCAACTTTGCCGTTGGTGTTGAAGGGAATCCACAACCTT
GTTACTTCCGCTATTTGGATCGAGGTAATAGTATTTACGTTATTTTATACATGTGATTGACCTCTGTTATAAATCCTCGA
GTATTGTGTGTGTCAGCATACCGATCCAGGGATGACACTTAAGCACAGAGATTTGATCCATTTGGGTCAGGTCGCTACAG
TTAGTGTGGTTCTGTGTAAACAAAGAGGTCATAAGTTTCTAT---------CTCCTTTGATATGTTTAAAAGGATTGTAC
CGAAGCAGAAGCTAGCTTTC--------------------------------------------GTGAGATCCTATACTA
GTTTCCCTTAAATTCAAGTC------------------------------------------CTCAAGTTCC--TGAGGG
TAACTTGGGTCTTTGCATCATGAGCGGCCGAG------------------------------------------------
----------------------------------------------------------------TTTGTTATTGGTTTTT
AT------------------------------------------------------------------------------
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---------------------------------------------AGTAG---TAGCAAACAATCGATGATAGGATTTGT
TATTAATTGA-GGAAGAGGTCGTTAAGCAGCAGCCCATGTCACTTGTGTCCCCACGCACGTCAGAGCAACATGCCTTTGC
TT------TTTCTGCCG-GTGGACAGTTTCTCC-----GGCCGGTCCATCATAGAGCCAGCGAGACTTGTATATAACCAC
CGCCTACCACGGACCCGA-CCTCAGAGCCAACCAACAGGGCGACCAAGCTCAATTAGCTCA--------GACTACTCAGC
TACCGCCTGTCCGCTCTC-AA------------------TTG--CTCCATA----------CCCTACATGGCGAGGGTTC
ACCCCAACATGGTGGCCGCGCCGGGCGCCATCGACGAG---------GCGCCGGCCAGCTCCGCGGTGG---ACGGGCCG
ACGACGCTGACGGTGTGGCGCAAGTCCCTGCTGTTCGACTGCAAGGGGTTCACGGTGTTCGACGCCGAGGGCAACCTTGC
CTACCGCGTCGACAGCTACGCCTCCGAGAGCGGCGACGAGGTCGTCCTCATGGACGCGGCCGGCCGCCCCGCCTTCACCG
TCCGCCGCAAGCGGT---TGACCCTGCAGGGCGAGCAGTGGCTCGTCTTCTCCGGCGAGGAGACGCG---GAGGCCCGTG
TACACCGTCAGGCGGA---------------GCGGCCGCGGCAAGACGTTGGCGCACGTGACGGCGTGCGCGGGCACCGG
C------GCTGGGCCGTCT------TACGAGGTGGAGGGGTCGTACGCGCGGCGGAGCTGCGTGGTGTACGACGGCGAGC
GGCGCGCGGTGGCGGAGATCAGGCCCAAGGAGGTGGTCGGCACGGACGTGTTCCGCCTGGCGGTGCAGCCC---GGCGTG
GGCGTGCCGCTCGCCATGGCAGTGGTGGTGGCGCTGGAGCAGATGTTCGCGAGGCCGTCGCTCCTCAGGAGCTGGTCCAC
ATAGATTATATAGTTAATTATAATTTGTTTGTTCAT---CGGAGT----ACGTCTCAGTATAGCCAAGCTTATAGC--TT
TTTTTTGCCCCTTGCGCTCAGTTTGGGG--TTGGAATTGAGACCGTGTCGATCGATG--GA-TCGATCGATCTGTGGGTG
TGGGCATGAGAGCAAGCCGATCTGTTCGATGATGCCCTCCAAATCAATCGCATATACGTACATACATACTACTATAGTAT
GGCCAAATGATGTCTTTTTGGTCTGTCGCTGTGTACATATTCCTTCAATCCAGAGAGTGAAATAA------TATAAACAG
TTCTTCTGTATACGGTCCTCAGCCTCCGAGTCTGGAGATAACATACATCTTGTTGTCTTGTACAGAGCGCTATGTCGATC
TTTTTCGCCATCTTTTTCATACGTATTTCGCCGAGATCACACGATTCGCATTACGTGGCCCGCGAGTTTCCGGCATCTTT
GATTCTCGAGCAAAACGATCTCCGAGATAGCCAGAGATATCTAGACAGGGACGCCGTTTCTCGTCGCTTCTGCCGCTTTC
CGTGCTCCGTGGAAACATGGAATCATATTTTCGGAAACATTTCCCGGCTGCGTTTCCATTCCATGTGGTGTGGACTGGCG
CTGGCAGGACCGCGACACGTCCTCGTCCTGGCACCATTTGCCGCCCTGGAGAAGGGAAGGGAAGGGAAGAGACGTGCACA
CCTGGGGTCCGAAATTCTGTTGGGAACGAGAGGAGAGGAGGCCACTTTTTGGGTACCTGGCGCGTCAGTCCAGCTGGGGG
CTCTGGACGATACGTGTGCGGTCGGCTCTGAATTAATGGAGGCTATCCGTCTGCCTGCGCCGTGCAGAACTTGCGAAGGA
GGATCCGTCTTGGTTTCTTGTGGTGTTTGTGTTCTTACGATGCTGGTG------------TGGCTCACTGAATTTTTA-C
CCGTGAGTCATGTGCTGTGGGTGTGAGT---GGTCTGTCCTTCTCCTG--------------------------------
----TACCCGACTCTGGGGTTCGGGTTCGGCAACAATCGCTGTTTATTCACGAAGCACGGCTGAAACCGTATGAGCATGG
AAATATAGTGAACAAAAAGATCTTATGGAGTACTATTATTAGTGAACAAAAGTATTCTAGCTTTGTACCGCTTATTGTGG
GCTTTAGCAAGCAAATCATCCACATGCCTCGCGCCCCTCCGACCAACTGGACGGCCCACCGTCTACACGGCCGAGCAGCT
GCTTAACTTCAAAGTTCAGTTTCCGTGAAGTGCAGCGTGCTTCTTTTACGGTAATGTTACCTAGCTGACGTT---TGAGA
GAGGGATGACAAG----
>chr3B_7
AAAATAC------G-AATATTTGCATTTTGAAAAATTGTACAGAAATTTAAGAAAAATGTCCGTGTCTTTCAAAGTTGTT
TGTGTTTTGACATTCTAAGAAACTTTGAAAAACACAACATTTTTCTTAAAATTTCTGTAGATTTTTTTTTTGAAAATGTG
AATATTTGTATTTTATGAGCAAATTTTGAAAAAAC--AACAC----TTTTTTTGAAATTTTTAAAAACATTT--------
------TTTTTGA-AAACTAGAAAAATGAAAAGAAACAAAAACAAACAGAAAAAATGAAATACGTGGGAAAAGACCAGTT
TGACAAATGGGCCAGCCCAGCAAAACCAGGGGCTTCCCGGGATTGAAGAACAAAGAAAGAAAGAAAAAAA--CTAAATTG
ACAT--GTGTTAAGATGTCCTAATTGGTTAGTGT----------------------------------------------
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-------GGTTCTCTCTAAACAAATAGGTCATAAGCTTGATTCACGTTGTCCTCCGTTGATGTGCTTAAGAGGATTGTAC
CGAAGCAGAAGTTAGCCTTCCCTTTTTAAGGGAAGAAAAGCTT-----TTTGATCTCACCTCC------ATTCTATACTA
GTCTCGTCTA------------CTGGCAGAAAATTCCTCCTAATTTATTATGCAGCAGCATTCT-AAGTTCT--TGAGGG
TAACTTCGGTCTTTGCATCATCAGCGGCCGAG------------------------------------------------
----------------------------------------------------------------TTTGTTATTGCTTTTT
AT------------------------------------------------------------------------------
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---------------------------------------------AGTACTACTAGCAAACAATCGATGATAAGATTTGT
TATTAATTGA-GGAAGAGGTCGTTAAGCAGCAGCCCATGTCACTTGCGTCCCCACGCACGTCAGAGCAACATGCCTTTGC
CT------TTTCCGCGG-GTGGACAGTTTCTCC-----GGCCGGTCCATCATAGAGCGAGCGAGACCTGTATATAACTAC
CGCCTACCACGGACTCGACCCTCAGTGCCAACCAACAGGGCGACCAAGCTCAATTATCTCA--------GACTACTCAGC
TACCGCCTGCCCGCTCTGGCGCTCTCAGCTCCTTGAGCCCTA--ATCGATA----------CTCTACATGGCGAGGGTTC
ACCCCAACATGGTGCCCGCCCCGGGCGCCGTCGGCGACGTGCCGTGCGCGCCGGCCAGCTCCGCGGTGG---AGGGGCCG
ACGACGCTGACGGTGTGGCGCAAGTCGCTGCTATTCGACTGCAAGGGCTTCACGGTGTTCGACGCCAAGGGCAACCTTGC
CTACCGCGTCGACAGCTACGCCTCCGAGACCGGCGACGAAGTCGTCCTCATGGACGCGGCCGGCCGCCCCTCCTTCACCG
TCCGCCGTAAGCGGT---TCAGCCTGCAGGGCGAGCAGTGGCTGGTGTTCGCCGGCGAGGAGACACG---GCGGCCCGTG
TACGCCGTCAGGCGGA---------------GCGGCCGCGGCAAGACGATGGCGCACGTCACGGCGTGCG------CCGG
C------GCCGGGCCATCT------TACGAGGTGGAGGGGTCGTACGCGCGTCGGAGCTGCGTAGTGTACGACGGCGAGA
GGCGCGCGGTGGTGGAGATCAGGCCCAAGGAGGTGGTCGGCACGGACGTTTTCCGCCTGGCGGTGCAGCCT---GGAGTC
GACGTGTCGCTGGCCATGGCCGTTGTGGTGGCGCTCGAGCAGATGTTCGCCAGGCCGTCGCTCCTCAGGAGCTGGTCCAC
ATAGATTATATAGTTAATTATAATTTGTTTGTTCATCATCGGAGC----ACGTCTCAGTTTAGTCAAGC---TTATAGCT
TTTTTTGCCCCATGCACTCAGTTTGGGG--TTGGAATTGAGACCGTTAGAGTC------GA-TGGATCGATCTGTGTGTG
TGGGCATGAGAGCAAGCCGATCTGTTCGATGATGCCCTCCAAATCAATGGCATATACGTA--------CTACTATAGTAT
GGCCAAATGATGTCTTTTTGGTCTGTCGTTGTGTACATATTCTTTCTA----GAGAGTGAAATAATAATTTTATAAACAG
TTCTTTTGTATACGGCTCTCAGCTTCCGAGTCTGGAGATAAC----ATCTTGTTGTCTTGTACAGAGCGCTATCTCGATC
TTTTTCATG------------CGTATTTCGCCGAGATCACACGATTCGCATTACGTGGCTTGCGAGTTTCTGGCATCTTT
GATTCTCGAGCGAAAGGGTCGGCGAGATCGCCAGAGAGATCTAGACAGGGACACCCTTTCTCGTCTTCTCTTCCGCTTTC
CGTGCTCCGTGGAAACATGGAATCATATTTTTGGAAACATTTCCGGCTGCGT------TTCCATGCGGTGTGGACTGGCA
GGATC--GACCGCGACTCGTCCTCATCCTGGGACCATTTGCCGCCCTGGAGAAGAGAAGGGAAGGGAAGAGACGTGCACA
CCTAGGGTCTGAAATTCAGTTAGGAACGAGAGGAGAGGAAGCCACTTTTTGGGTACCTGGCGCGTCAGTCCAGCTGGGGG
CTGTGGATGATACGTGTGCGATCGGCTCTGAATTAATGGAAGCTATCCAT----CTGCGCCGTGCAGAACTTGCGAAGGA
CAATCCGTCTTGGTTTCTTGTGTTGTTTGTGTTCTTACGATGCAGGTGTTTGCCTCTGGCTGGCTCACTGAATTTTTTGC
CCGTGAGTCATGTGC------TGTGAGT---GGTCTGTCCTTCTCCTATAACCGTTTTTTTTTCTTTTTTTGCGGAAACT
CCTATAACCGACCCTGACGTTCGGGTTCGGCAACAATCGCTGTTTATTCACGAAGCACGGCTGAAACCGTATGAATAGAG
AAAT-TAGTGAACAAAAATATCTTATGGAGTACTATGGAAGGAGT-----AGTATTCTTGCTTTGTGCCGCTTTTTGCGG
GCTTTAGCGAGC-AATTATCCACATGCCTCCCGCCCCTCCGCCGAA-TGGACGGCCAACCGTCTACTCGGCCTAGCAGCT
GCTTAATGTCAAAGTTCAGTT-----------------------------------------------------------
-----------------
>chr3A_612
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---------------------------------------------TATTATGCAGCAGCATTCTCAAGTTCTT----GGG
TAACTTCGGTCTTTGCGTCA---GCCGAATTTATTAGACTGGTCATAGTGGGGAGTAACTTATATTAGTGTCATGCATAT
GATACTAGTCTAAGTTACTATCTTCATAGTGCAAAGTATCTTAGTAGTAGTGTCATAGATTGTTTTATTTATTGCCTTAT
AGACTCATTTTATCTTGAGAAGCACTATGTTACAGTAACATATTAGGCTGCCCGTAATGGGAGTATCATAGGTAGTATCA
TGCATGCCAACTAAGCAATTTTGATGAGGTGGCATAGAATTAAATAAAGAAAGAGAGGCTTGAGTATCATATCATGATAC
CGTATCATATTAAATGATGTGCTACTTTGTGTCATGCATGGCAATAAATGTAGTCCTTTATGATACCAATATATGATACT
ATGCATTAGGGATGTAGTATTATAGACTAGTATCATATGCATGATACTTGTATATGATACTCCCCATTACAACCAGCCTT
ATGTTATTCCAAACATCTCTCTCCTCATTAAATACTTGCCACATAAGTAAAATTGTCTTAGGATGTGTTAAGTTACTATC
TAAGTTACCCCACTATGGCTAGCC---------------------AGTAA---TAGCAAACAATCCATGATAAGATTATT
AATTAACTGA-GGAAGAGGTCGTTAAGCAGCAGCCCATGTCACTTGCGTCCCTACGCACGTCAGAGCAACATGCCTTTGC
CT------TCTTTGCCG-GTGGACAGTTTCTCCCGCCCGGCCGGACCATCATGGAGCGAGCTGGACTTGTATATAACTAC
AGCCTACCACAGACTCCTCTCTCAGAACCAACCAACAGGCCGACCAAGCTCAATTAGCTCA--------GACTACCCAGC
TACCGCCTGTCCGCTCTC-AGCTCCT------TCGA-CCCTGATATCGATA----------CTACACATGGCGAAGGTTC
ACCCCAACATGGCGCCCGCGCCGGGCGCCGTCGACGAGGCGCCGTGCGCGCCGGCCAGCTCCGC---GG---AGGGGCCC
ACGACGCTGACGGTGTGGCGCAAGTCGCTGCTATTCGACTGCAAGGGGTTCACGGTGTTCGACGCCAAGGGCAACCTGGC
CTACCGCGTCGACAGCTACGCCTCCGAGAGCGGCGACGAGGTCGTCCTCATGGACGCGGCCGGCCGCCCCAACTTCACCG
TCCGCCGTAAGCGGT---TCAGCCTGCAGGGCGAGCAGTGGTTGGTGTTCGCCGGCGAGGAGACGCG---GCGGCCCGTG
TACACAGTCAGGCGCA---------------GCGGCCGCGGCAAGACGTTGGCGCACGTGACGGCGTGCGCGGGCGCCGG
A------GCCGGGCCGTCG------TACGAGGTGGAGGGGTCCTACGCGCGGCGGAGCTGCGTGGTGTACGACGGAGAGC
GGCGCGCGGTGGCGGAGATCAGGCCGAAGGAGGTTGTCGGGACTGATGTTTTCCGGCTAGTGGTGCAGCCC---GGAGTC
GGCGTGTCGCTCGCCATGGCCGTGGTGGTGGCGCTCGAGCAGATGTTCGCCAGGCCGTCGCTGCTCAGGAGCTGGTCCAC
CGTAGAT---TAGATAATTATAATTCGTTTGTTAT---------T----ACGTCTCGATTTAGTCAAGC---TAGC--CT
TTTTTTGCCCCTTGCGCTTAGTTTGGGG--TTAGGTTGGAGTACAAATTGTGATGGCGAGAGTCGATCGCTCGATGTGTG
TGGGCATGAGAGCAAGCCGATCTGTTCGATGATGCTCCCCAAA-------------------------------------
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>chr3D_834
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------------------------------------------------------------------------------TT
AATTAATGCCCGGAACAGGTCGTTGAGCAGCAGCCCATGTCACCCCTGTCCCTACGCACGTCAGATCAACATGCCTTTGC
CA------TTTCTGCGA-GCGCACAGTTTCTCC-----GGCCGGTCCACCATG----GAGCGAGACCTGTATATAACCAC
-GCCTACCAGACTCCAT--TCTCAGAACCAACCAACAGGGCGACCAAGCTCAATTATCTCATCCAGCCCGACTACTCAGC
TACCGCCTCCCCAGTCTCCAGCTCCT------TCAA-CCTTGCTCCATCCTTGATCGATACCTCTACATGGCGAAGGTTC
ACCCCAACATGGTGCCCGCGCCGGGAGCCGTCGACGAGGCGCCGTGCGCGCCGTCCAGCTCCAC---GG---AGGAGCCG
ACGACGCTGACGGTGTGGCGCAAGTCGCTGCTGTTCGACTGCAAGGGGTTCACGGTGTTCGACGCCAAGGGCAACCTGGC
CTACCGCGTCGACAGCTACGCCTCCGAGAGCGGCGACGAGGTCGTCCTCATGGACGCGGCCGGCCGCCCCGCCTTCACCG
TCCGCCGGAAGCGGT---TCAGCCTGCAGGGCGAGCAGTGGCTCGTCTTCTCCGGCGAGGAGACGCG---GCGGCCCGTG
TACACCGTCAGGCGCA---------------GCGGCCGCGGCAAGACGTTGGCGCACGTGGCTGCGTGCGGGGGCGCCGG
A------GCCGGGCCGTCG------TACGAGGTGGAGGGGTCCTACGCGCGGCGGAGCTGCGTGGTGTACGACGGCGAGC
GGCGCGCGGTGGCGGAGATCAGGCCGAAGGAGGTGGTCGGGACTGACGTTTTCCGCCTGGTGGTGCAGCCC---GGCGTT
GGCGTGTCGCTCGCCATGGCCGTGGTGGTGGCGCTCGAGCAGATGTTCGCCAGGCCGTCGCTCCTCAGGAGCTGGTCCAC
CATAGAT---TAGTGAATTTAT---------TTGTTA-------T----ACATCTCGATTTAGTCAAGC---TAGTCTCT
TTTTTTACCCCTTGCACTAAGTTTGGGGGGTTGGGTTGGAGTGTCAATTGTGATAGCGAGAGTCATTCGCTCGATGTGTG
TGGGCATCAAAGCAAGTCGATCTGTTCGAGGATGCCCCCCAAA-------------------------------------
--------------------------------------------------------------------------------
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>chr3B_834
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------------------------------------------------------------------------------TT
AATTAATGTCCGGAAGAGGTCGTTGAGCAGCAGCCCATGTCACCCCTGTCCCTACGCACGTCAGATCAACATGCCTTTGC
CTCTGCCTTTTCTGCGGGTTGCACAGTTTCTCC-----GGCCGGTCCACCATG----GAGCGAGACTTGTATATAACAAC
AGCCTACCAGACTCCAT--TCTCAGAACCAACCAACAGGGCGACCAAGTTCAATTATCTCACCCAGCCCGACTACTCAGC
TACCGCCTCTCCAGTCTCCAGCTCCT------TCAA-CCTCCCTCGATCCTCGAT----ACCTCTACATGGCGAGGGTTC
ACCCCAACATGGTGCCCGCCCCGGGCGCCGTCGGCGACGTGCCGTGCGCGCCGGCCAGCTCCGCGGTGG---AGGGGCCG
ACGACGCTGACGGTGTGGCGCAAGTCGCTGCTATTCGACTGCAAGGGCTTCACGGTGTTCGACGCCAAGGGCAACCTTGC
CTACCGCGTCGACAGCTACGCCTCCGAGACCGGCGACGAAGTCGTCCTCATGGACGCGGCCGGCCGCCCCTCCTTCACCG
TCCGCCGTAAGCGGT---TCAGCCTGCAGGGCGAGCAGTGGCTGGTGTTCGCCGGCGAGGAGACACG---GCGGCCCGTG
TACGCCGTCAGGCGGA---------------GCGGCCGCGGCAAGACGATGGCGCACGTCACGGCGTGCG------CCGG
C------GCCGGGCCATCT------TACGAGGTGGAGGGGTCCTACGCACAACGTAGCTGCGTGGTGTACGACGGCCAGC
GGCGCGCGGTGGCGGAGATCAGGCCGAAGGAGGTGGTCGGGACTGATGTTTTCCGGATGGTGGTGCAGCCC---GGCGTG
GGCGTGTCGCTCGCCATGGCAGTGGTGGTGGCGCTCGAGCAGATGTTCGCCAGGCCGTCGCTCCTCAGGAGCTGGTCCAC
CATAGAT---TAGCTAATTTAT---------TTGT---------T----ACATCTCGATTTAGTCAAGC---TAGTCT-T
TTTTTTACCCCTTGCACTAAGTTTGGGG--TTGGGTTGGAGGATGAATTGTGATAGCGAGAGTCGTTCGCTCGATGTGTG
TGGGCATGAGAGCAAGTCGATCTGTTCGATGATGCCCCCAAA--------------------------------------
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>chr3A_834
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------------------------------------------------------------------------------TT
AATTAATG-CCGGAAGAGGTCGTTAAGCAGCAGCCCATGTCACCCCTGTCCCTACGCACGTCAGATCAACATGGCTTTGC
CT------TTTCTGCGAGGTGCACAGTTTCTCC-----GGCCGGTCCACCATG----GAGCGCGACCTGTATATAAGTAC
GGCCTACCAGACTCCAT--TCTCAGAACCAACCAACAGGGCGACCCAGCTCAATTATCTCATCCAGCCCGACTACTCAGC
TACCGCCTCCCCAGTCTCCAGCTCCT------CCAA-CCTTGCTCGATCCTTGATCGATACCTCTACATGGCGAAGGTTC
ACCCTAACATGGTGCCCGCGCCGGGCGCCGTCGACCAGGCGCCGTGCGCGCCGGCCAGCTCCAC---TG---AGGAGCCG
ACGACGCTGACGGTGTGGCGCAAGTCGCTGCTGTTCGACTGCAAGGGGTTCACGGTGTTCGACGCCAAGGGCAACCTGGC
CTACCGCGTCGACAGCTACGCCTCCGAGAGCGGTGACGAGGTCGTCCTCATGGACGCCGCCGGCCGCCCCGCCTTCACCG
TCCGCCGCAAGCGGT---TCACCCTGCAGGGCGAGCAGTGGCTCGTCTTCTCCGGCGAGGAGACGCG---GAAGCCCGTG
TACACAGTCAGGCGCA---------------GCGGCCGCGGCAAGACGTCGGCCCACGTGACGGCGTGCG------CGGG
CGCCGGAGCCGGGCCGTCGT------ACGAGGTAGAAGGGTCGTACGCGCGGCGGAGCTGCGTGGTGTACGACGGCGAGC
GGCGCGCGGTGGCGGAGATCAGGCCCAAGGAGGTGGTCGGCACAGACGTTTTCCGGCTGGTCGTGCAGCCC---GGAGTC
GGCGTGTCGCTGGCCATGGCCGTGGTGGTGGCGCTCGAGCAGATGTTCGCCAGGCCGTCGCTGCTCAGGAGCTGGTCCAC
CATAGAT---TAGTGAATTTAT---------TTGT---------T----ACATCTCGATTTAGTCAAGC---TAGTCT-T
T-TTTTACCCCTTGCACTACGTTTGGGG--TTGGGTTGGAGGATGAATTGTGATAGCGAGAGTCATTCGCTCGATGTGTG
CGGGCATGAGAGCAAGTCGATCTGTTCGATGATGCCCCCCAAAT------------------------------------
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>chr3D_848
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-------------AAGAGGTCGTTAAGCAGCAGCCCATGTCATTTGTGT-CCCACGCACGTCAGAGCAACATGCCTTTGC
TT-----------------------------------------GTCCATCGTGGAGCGAGCGGGACTTGTATATAACTAC
TGCCTACCACAGACTCCTCTCTCAGAACCAACCAACAGGGCGACCAAGCTCAATTAGCTCG--------GACTACTCAGC
TACCGCCTGTACGCTCTC-AGCTCCT------TCGA-CCCTGATATCGATA----------CTATACATGGCGAAGGTTC
ACCCCAACATGGCGCCCGCGCCGGGCGCCGTCGGCGAGGCGCCGTGCGCGCCGGCCAGCTCCGC---GG---AGGGGCCG
ACGACGCTGACGGTGTGGCGCAAGTCGCTGCTGTTCGACTGCAAGGGGTTCACGGTGTTCGACGCCACGGGCAACCTGGC
CTACCGCGTCGACAGCTACGCGTCCGAGAGCGGTGACGAGGTCGTCCTCATGGACGCCGCCGGCCGCCCCGCCTTCACCG
TCCGCCGCAAGCGGT---TCAGCCTCCAGGGTGAGCAGTGGCTCGTCTTCTCCGGCGAGGAGACGCG---GCGACCCGTG
TACACCGTCAGGCGTA---------------GCGGGCGCGGCAAGACGTTGGCGCACGTGACGGCGTGCG------CGGG
CGCCGGCGCCGGGCCGTCGTACGACTACGAGGTGGAGGGCTCGTACGCGCGGCGGAGCTGCGTGGTTTACGACGGCGAGA
GGCGCGCGGTGGCGGAGATCAGGCCCAAGGAGGTGGTCGGGACCGACGTTTTCCGGCTGGTGGTGCAGCCC---GGCGTG
GGCGTGTCGCTCGCCATGGCCGTGGTGGTGGCGCTCGAGCAGATGTTCGCCAGGCCGTCGCTGCTCAGGAGCTGGTCCAC
CGTAGAT---TAGTCAATTTGT---------TTGT---------TTGTAACGTCTCGATTTAGTCAAGC---TAGCCT-T
T-TTTTGCACCTTGCGCTTAGTTTGGGG--TTGGGTTGGAGTACAAATTGTGATGGCGAGA-TCGATCGCTCGATGTGTG
TGGGCATGAGAACAAGCCGATCTGTTAGATGATGCCCCCCAAA-------------------------------------
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>chr3B_1047
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---------------------------------------------------------------------------TCAGC
TACAGCATCTCCGTCTCC-AGCTCCT------TCAA-CCTTG--ATCGATA----------CTCCGCATGGCGAAGGTTC
ACCCCAACATGGTGCCCGCGCCGGGCGCCGTCGACCGGACGCCATGCGCGCCGGCCAGCTCCAC---GG---AGGGGCCA
ACGACGCTCACGGTGTGGCGCAAGTCGCTGCTGTTCGACTGCAAGGGGTTCACGGTGTTCAATACCAAGGGCAACCTGGC
CTACCGCGTCGACAGCTACGCCTCCGAGAGCGGCGACGAGGTCGTCCTCATGGACGCCGCCGGCCGCCCCGCCTTCACCG
TCCGCCGCAAGCGGT---TCAGCCTCCAGGGCGAGCAGTGGCTCGTCTTCTCCGGCGAGGAGACGCG---GCGTCCCGTG
TACACAGTCAAGCGCA---------------GCGGCTGCGGCAAGACGTTGGCCCACGTGACGGCGTGCG------CGGG
CGCGGTTGCCGGGCCGTCG------TACGATGTGGAGGGGTCCTACGCGCGGCGGAGCTGCGTGGTGTACGACGGCGAGC
GGCGCGCGGTGGCGGAGATCACGCCGAAGGAGGTGGTCGGGACGGACGTGTTCCGCCTGGTGGTGCAGCCC---GGAGTC
GGCGTGTCGCTGGCCATGGCCGTGGTGGTGGCGCTCGAGCAGATCTTCGCCAGGCCGTCGCTGCTCAGGAGCTGGTCCAC
CGTAGAT---TAGTCAATTTGT---------TTGT---------TTGTTACGTCTCGACTTAGTCAAGC---TAGCCT-T
T-TTTTGCCCCTTGCACTTGGTTTGGGG--TTGGGTTGGAGGATGAATTGTGATGGCGAGAGTCGGTCGATCCGTGTGTG
TGGGCGTGAGAGCAAGCCGATCTGTTCGATGATGCCCCCAAA--------------------------------------
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>chr1A_1184
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--------------------------------------------------------------------------GAGCCG
GTGACACTGACGGTGTGGCGCAAGTCGCTGCTCTTCAACTGCCGGGGGTTCACGGTGTTCGACGCCAGCGGCAACCTGGT
GTACCGCGTGGACATCTACGCGTCCGACTCCCGCGCCGAGGTGGTGCTCATGGACGCCGCGGGGCGGCCGGTGCTCACCG
TCCGCCGCAAGAAGGCCATCAGCCTCATGGGCGACCAGTGGCTGGTGTTCCCCGGCGAGGAGACGCGCGCGCCGCCGCTC
TACGCGGTGAAGCGCACGCCGCAGTACATGCGCGGCGGCGGCAAGTCGACGGCGCACGTGGCGGCGTGCG------CGGG
CGGCGCGCG---------G------TACGAGGTGGAGGGGTCGTACGCGCGGCGGTGCTGCGCGGTGTACGACGAGCAGC
GGCGCGCGGTGGTGGAGGTGCAGCCCAAGGAGGCGGTGGGCACGGACGTGTTCCGGATGGTGGTGCGGCCGGCGGGCATG
GACGTGTCGCTGGCCATGGCCGTCGTGCTCGCGCTGGACCAGATGCTCGGGAGGCCGGGGCTGCTCAGGAGCTGGTCCTC
GTAG----------------------------------------------------------------------------
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-----------------
>SNPs
----------S-S----------------S---------------------S----------------------------
--------------------------------S---------------------S----------------SS-------
S--S----------S------------S-----S-----SSSSSSS--------------------------S-----SS
S-----------S--------------------S----------------------------S-----------------
----------S------------------------------------------S------------SS------------
---SSS----------------S---------------------------------------------------------
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-------------------------------------SS--------S-S-----------S----S-S-----------
-----S-S------S-----SSSSSSSS---SSSSSSSSSS--SSSSS-------S-----SSS----------------
----S----SS-SSSSS---SS---------------------------------------------------S------
-------------------------S------------------------------------------------------
-------------------------------------------------------------------------SS----S
SSSSSSS-SSSS--SS----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------SS-SSS--S--S-SS-S---SSSSS-S-S---SS-SSSS--S
S-SSS-SSS-SS-S--SSSS-SSSSSSSSSSSSSSSSSSSSSSSS--------------S-----S-----------S--
--------------------------------------------------------------------------------
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-----------------------------------------------------------------S--------------
---------------------------------------------------------------------SSS--------
-----------------------------S--------------------------------------------------
------------------------S-----------------------------------S-------------------
-S-----S---------------S----S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S----S--------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S-----S------
-------------------------------------------------S---------------S--------------
--------S--------------------------S-------S-----S-----------SS-----------------
---S--------------------------S--S----------------------------------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
-------------------------S-----------------------------S------------------------
----------------------------SSS-----------------------S--------------------S-S--
---------------------------------------------S----------------------------------
-------------------------S----S-------------------------------------------------
--------------------------------------------------------S-----------------------
----------------------------S----------S--S-----S----------S-S----------SSS-----
-----S--S----SSSS
>forward_2867
--------------------------------------------------------------------------------
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----------------------------------------------TCGCCCTCCGTTGATTTGTTA-------------
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>reverse_5090
--------------------------------------------------------------------------------
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-------------------------------------------------GTTACGTGGCTTGCGAGTTT-----------
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-----------------
