>input_sequence_63239
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---------------------------------------------------------------------------GCCCG
GGCCAGACCGGCAGATTCCCTCCCTATCCAGGTCTCAAGCCCTGGCTCTCGCGAACCCTCCTCCTCCGGCCAGGCAGGCG
GCTATATATACCACCGCAA-GCAGCGGCCACTG----CTCTTCACCAAGCAAGAGCATAACCAATCAACCACAAGTCGAT
TTGCGAAGCACT----CTCCGATCACAACCCAAGACCACCATGGCTGACAAGTGCGGCAACTGCGACTGCGCCGACAAGA
CCCAGTGCGTGTAAGTG-----CCT---AGCCAGCAAGATCGAGCTATACATAAACCTTTCTG----------TCGATCG
AGCTGATCAATCTCTTCTGCATACCTCTAACTTGCTGTCTTGCTTCTAGCTACTCCACATGATCTTCATCTTCGTATTCG
TATCGATCTTTCTTTG------CTCCACTCTGTCTCTGTCTGAACATGTTCCTGCGGTTTTG--------TCATGTGTGC
AGGAAGAAGGGCAACACCTACGGCATCGTCATGGTTGACACCGAGAAGAGGTACTG-----------TACTATTTCGGTT
CGTTGATCCGCCGTTAAGCTA-----------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GAACAAAATAACCAAT------------
-----------------TAACGTTGGTCACTTGGTGCATGCATGTGCAGCCACTTCGAGGTGCAGGAGACCGCGGAGAAC
GACGGCAAGTGCAGCTGCGGCACCAGCTGCACCTGCACCAACTGCACCTGCGGCCACTGAAGAAGCCCTCCCCGCTGGGC
CTCTCGTCA----CGTACGCGTCTACCCGTACTAGTAACCCGTGCCAATAAAAG----TCTGTACGTGTGTGTGTGTGTC
TACGTCTCTTCTGTTGTCGTGCGAAAACCTGAAGGTTAAGCTGATGATGTGCGCATAGGATACCGGATCGGCC-------
TCGATCCCGTGT---TCCCGTGTAACCGGTGGCTGAGCTTCAGGTTGTACTGCTATGTGGTTGTGAGCTCGCACGCTTTG
TGCCATGTGACTTCCATTTCGTGTATCTTTGTTGCATGGAATGAAATTTATGGTGTGGTTTTCTAGCTACTCCCTCCTTC
CCATAATATAAAA-------------------------------------------------------------------
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-------------------------------------------------------------------
>chr3D_1_TraesCS3D01G141100
TATCAAAAAATACTTCCGTTTTATTGTGAACCAAACTAGAACTATTGAGTATGGTGATTGTTTAGAAAATATAAGATAGA
CTAAAAATTATTTTAGTTA-TCTTGTAATCCAAGAAGGTCATGCACACTTTTATATATGTATGTATGTCTACGAGGCTCA
AGTAATAAATTAATGATTCCACTCATCCTTCTCTATTCCTCTTACATGGTATCAAACTAACCCT----------------
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-------------------------------GATAAAAAAATCGTAGTCGCCGACGCATCCTCACT-GCGCCACCCCCAA
GTCAGTCGATATCCATGATCGCCACCGGGGGC----CCGCCCGTACATAGGGTTCGTCCGCCGGTCGTGCTGATCGGCTG
TCTTTGAGAGTCTTTTTCCGGTCCTTTGATCCAGTTATTTTTGTCTCGCACCGGTAATCTTGATCGACGCTTCTTTTTTG
TCTTCCGGTTTAAGATTGGTTTGCGTCGCCCGCTACCACCCGTTGACACCACTGCGCC----------------------
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------------------ACTGACTAACAAGTCGC---------------------------------------------
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-----------------------------------GGCATTGCACCTGCGGCTCCACGGTGACTACCTCGACACCAGCCA
CCATGACTCGACATCGAACACGGCGTCCCTGACATGAATACCTCAACCATGGCTACACCACCCTCTGCTCTCGACTACCT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---CGACAACGGCACAAAGGCTACCACCTTGTTTGAG-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CAACCTCGTCGGTTTTCATTACAGCCACGA
TTTTCACGATGCATCGATCGTTAAGACTATGGGGTGGGGGGGCGTCCATCGGCTTAGAACAGGGAGTATTTGCTGTTCTC
AAATAAGGCTAAAAAAAGG---AAAATACGATCAATA---ATTGGATATAAAAAGCTACTCTAGAGAGAAGGATCCGGAA
GAGCCAGGCATCGGCATTGATGGGGGTATCTGGGAAAGGCGAGATGGACGGACACGGCCGGCCGGTGAAGAAGGCAATTG
GTACGCGTGCCCTGCGCGTGCGGTGACGGTGAGAGATTCCTTTCGGCTAGCTAGCTAGAGTTCCTCCCGTCCCCAGCCCG
GGCCAGACCGGCAGATTCCCTCCCTATCCAGGTCTCAAGCCCTGGCTCTCGCGAACCCTCCTCCTCCGGCCAGGCAGGCG
GCTATATATACCACCGCAA-GCAGCGGCCACTG----CTCTTCACCAAGCAAGAGCATAACCAATCAACCACAAGTCGAT
TTGCGAAGCACT----CTCCGATCACAACCCAAGACCACCATGGCTGACAAGTGCGGCAACTGCGACTGCGCCGACAAGA
CCCAGTGCGTGTAAGTG-----CCT---AGCCAGCAAGATCGAGCTATACATAAACCTTTCTG----------TCGATCG
AGCTGATCAATCTCTTCTGCATACCTCTAACTTGCTGTCTTGCTTCTAGCTACTCCACATGATCTTCATCTTCGTATTCG
TATCGATCTTTCTTTG------CTCCACTCTGTCTCTGTCTGAACATGTTCCTGCGGTTTTG--------TCATGTGTGC
AGGAAGAAGGGCAACACCTACGGCATCGTCATGGTTGACACCGAGAAGAGGTACTG-----------TACTATTTCGGTT
CGTTGATCCGCCGTTAAGCTA-----------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GAACAAAATAACCAAT------------
-----------------TAACGTTGGTCACTTGGTGCATGCATGTGCAGCCACTTCGAGGTGCAGGAGACCGCGGAGAAC
GACGGCAAGTGCAGCTGCGGCACCAGCTGCACCTGCACCAACTGCACCTGCGGCCACTGAAGAAGCCCTCCCCGCTGGGC
CTCTCGTCA----CGTACGCGTCTACCCGTACTAGTAACCCGTGCCAATAAAAG----TCTGTACGTGTGTGTGTGTGTC
TACGTCTCTTCTGTTGTCGTGCGAAAACCTGAAGGTTAAGCTGATGATGTGCGCATAGGATACCGGATCGGCC-------
TCGATCCCGTGT---TCCCGTGTAACCGGTGGCTGAGCTTCAGGTTGTACTGCTATGTGGTTGTGAGCTCGCACGCTTTG
TGCCATGTGACTTCCATTTCGTGTATCTTTGTTGCATGGAATGAAATTTATGGTGTGGTTTTCTAGCTACTCCCTCCTTC
CCATAATATAAAAACTTTTTTGACACCACACTCTTACATTCTTATATTATTATGCTCTTATATTATGGAACAGGAGGAAT
AGTAAACGTCTCTTTGGTTGTCTTTCTATCGAGCGTGTATACAGATCGGGGCGGCAATTAAGCAACAACTGGTGGTATCT
GTTTTATTTTTATCATGATATAAAAGATATTTTTTAGAACACGCAACAAAACTTGTCGCGGCACTG--------------
TTTTTGAGTTGTTTTATTATTGACGAAACTTAGCAGGTTCTTTACACTGCGCGCACAAAGGTTAGACACAGAACACATAA
GGTAGTATATGCAGTTATGAAGCGTTGCAGAGGGGAAACAAAACAAATCAGAAAAAATGTTGGACCTAGCTTCTGCTAGA
CCTAGGCTACACAACATCCATTGTTATCCAACAAAATCGGAATCAAGATATGCACCCTATATAGTGTAGTGTGAAGAGTT
GCAAAAATCACCCGAGGGTTCGCATACCTATAAATCTATAATCACCTTATGCACCTTGTGGGTTATGGGCGTGTTGGGGT
TGTGTGCCTCTTGCTACGCAGAGGTGGATGCGAGGTTTATACGCATTGTAATTTGCATTTGTATTGATGTGACGCTTGAG
TCAACATTATCGGAAAAGTAATGATGGTCTACTGGCATCAATTGATCATTTTAAAAATCTACCTTTTTATCATAAAACCT
CGTGAAACAAAATTGGTACAAGGCGTCCTCTATAAACATCCATTTACTTGTCAGTTTTAATTACGCGTTTTACACAACAA
AACGTTTGATAAAGTTCTTATGTTCGGGCAGGTTGAATGATGTCTTTCTGTTTTTATTTTCTTAGATACCAAAACTTTTC
AGGAATTTTATATATAAAAAAATTGAGGCGTTTCCCACAAGCATGTCTTATGTTGATATTTTTCAGCCAGGTGAAAAAAA
TATTATTGCCCTCAGAATATTTTAAAACAAAGCAACATACAAAAAGAATCATAGCGGGAGTTCTTGT
>chr3B_1
TATAA-AAAATACTTCCGTTTTCCTGTGAACCAAACTAGAACGGTTGAGTATCGTCATTGTTTAAGAAATATATGATAGA
CTAAACATTATTTTAGCTTGTCTTGTAATCCAAGAAGGTAATGTACTTCTATATAAATGCCGAT--------GAGGCTCA
AGTAATAAATCAACGATTCCACCAATTCTTCTCTATTCCTCTTACATGGTATCAATCTAATCCCGTTACAAAAACCCTAG
CCACCGACGTGAGTGTGGCGAGAAAGAACGCGAGTGACGGGAAAGGGGTTTTGGATGGACCAGGTTTGTCAGACACTTGC
ATGCCCCCTCCCCCCTCCCAGTTTGCTTTTTGTTTGCGGAAAAAAGGACGTCTAGAGAGACGCGTGGACGGCTACAGGAC
CACGTTGAATGGCAAGATATGTCTGAACGGGGTGATCCGAACGGTTACGATCGGTCTAAAAGCCTGCAATTGAAGATGCC
CTATACACATAGCCACAATTGTACTCCATTGTTTCCTCCCTGCAAAAGGCAATGTACAATTGTGATGAAGATTTCCGTCT
GGATGGGGAAACGCAACCGATCATTGTGGTAGGTTGAGGAGGATGTGTTTTCGACTTATAACCAACGAAAAAGTAGTACG
CTACAAAATATAGTGTCGCCATTGTCCGGATCCTACACAATTTATAGTGTGCTATATTTAAAAATAGCATCTTAAAAAAC
ATCAAATATATTACATAATTCAACAATTTCAGCAGCTTAAAAATTGTCCAAGAGAAATACATGCATAACCAATTAACCAC
ATACAAGAAGCAGTGGCGCATGTCCCCCCTCCACAACCGCACCCCTCATCTCCTTCCCATAGCATAAGCAAGAATTAGTC
ACAGTAGCCCCAGCCGCTCCTCTTCCCCGGCCACCGACAGCAGGCGGAGCACGCGCACACACACGAGCAAGCAACAGCAG
GAGGTCACCAAGGTGGAAGAAGTAGAAAAAGGTATTGCATGGTGGCTGACCTGCCACCATTATATTGCCGGGGGTGTGGC
TGATGTTGTCCCTTCCGGTATTGGCTGAAGTCGAGTTGAAGGAAACCACCCCCGTTTCCGCTCACAAGAAGACGCTGCCG
CCGGTGCTCATAGCTCAGAAGGGAAAGGTGAATGAACCGCGGTTGGTTGTTCATTATGTTTGACCATCCGAGATAGAGAT
CGAGATGGGTGTGGGTTGTCGGCCTGTGGCCAGTCGAAGGGTAGTTTTGGGCAGCTGGGGCTTGGTAGTTGTTTTCTCTC
CTTCAACTTTTTGCATGACGCTACAACGCTATAACGCTACAATTTTTAGGATGAAAATAGCACTCTATAACGCGATTAGC
TCCGTAGCGAGCAAAATTGCTCAAACGTAGCGTGCCCCTTCCAGATACACTATAGCGACGCTATAAATAGCGTGCTATTT
TTTACATTGCTTCTAGTCAAGCATGGGCCAACGGGGAAGAGAGGCAAAATATCATTGCCATATGAAATAATTTACTTTTC
TTTCTTGTGAGGACCAAGATTTTAGTGTGAGTATTTACTTATCTCTTCCTGTGATATAAAAAATACTTCCGTTTTCCTGT
GAACCAATCTAGAACGGTTGAGTATCGTGATTGTTTAAGAAATATTGGATAGACTAAAAATTGTTATAGTTTGTCTTGTA
ATCCAAGAAGGTAGTGTATTTCTGTATATATGCCCCTACCAGGCTCAAGTAATAAATCAACGATTCCATCAATTCTTCTA
TATTCATCTTACATGGTATCAACCTAATCCCGTTTCAAAAACCCTAGCCGCCGACGCCGACGCACTGGCGCCACCCCCGG
GGCGGTCGATCTCCATGATCGCCACCAGGGGGCGCGCCGTCCATACTCGGGGTTCGTCCGCCGGTCGTAACCAAT-----
--------------------------------------------------------------------------------
------------AGACTGCACTGCATAACCCTCTCCAAGTTGTTGATGCAAAGGGACACCTACCCTCTCGCTCTAGACCA
AGGAGTGTCGATCCTGCCTACGAGAAACACAGCCCGAGCACGACGATGGTGCAATCATGTGTAAAAGAAAGGAGGCCCAT
GAGCCCACTTCCACTAAGGTCTAAGAGGGATCAACCTAGAACAAAGCCTGTCAGACCACCGCAACGCAAATGAGAGGTAC
CTGAGCTCCACTACAACACCCCCAAGATAGTAGCGGTGCAAAGTGCCACCAGCGCCGAGTGCGAAAGAAGGATCAAAACA
ACTAATACAAGGAAATAAACTGACTAAGAAGGTGATTTATTTACCGCTTTTGCTATTACTAGCAAACATGCCCGTGCGTT
GCAACGGGAGACAAAAAAGTTACACGCCAGCCAAATAAGTATGACTCAATACCCCAAATTATGAGTGTTCTTTATTTTCA
CATGGTGGCTCACCATGTTTCCACTTATCTTTCTTCCCACACCCTCGTTGATGATGTACACGATATGCATGTGATCGCAA
TGCATTTGACGTGGTAAATCCCAAGGCAATGAGCTTGCCACTGCATGGCACGCACGCTAGAGATTGTTTAAAACTTTAAA
AACAAATTTCATGGACCACAAACTACTCCTAGCGCCTAGACATAAAAAGACTTTCCAAAAACTACCCAAATCCTAGACAT
GAAAGACTTTTGAATCGACGAACATTTTTTCTAATCGAGAAACATTTGTTTTAAAATTTTGGGCATTTTTTAAATGCATG
AACATTTGTTTTGTTCAGACGAACATTTTTTGAAATGCATGAATTGTTTTCGAATTCATGAACATTTGTTTTGTTCAGAC
GAACATTTTTTGAAATGCATGCATATTTTTTGAATTGATGAACATTTTTTGAGTTAGCAAACCTTTTTTGTATCGATAAA
CTTTTTTTATAATTGGGGAACAAATTTTGAAAAATTGTGATTTTTTTATAATTTGCGAACAGTTTTGTGAATCACCAAAA
AAATGAAAACTGCGGAAAATTTATGAGTTCTCACACATTTTTTGAATTCATAAACATTCTATGATTTCTCAAATATTTTT
CTCAAAGCTTGCAACCTTTTGTAATTTGAAAATCTCGAATTAATTTAAAGAAGGAAAAACAAAAACAGAAATGAGAAAAG
AAAAAACGAAATGAAAACAGAATAGGGGCGTCACGCCCCACGGGCCGGCCCATGAACGCGTATGTGGGAGGGAGGAGGTG
CTTGACAAAAAGGTAGAGGAAATAGGACGACCCTGGGGATCGAACCCGGGTCTGCGCGGTGGAGAAGATATGCTTCAACC
ACTGAGCTGGTAGA--------GCGTCTGTGACATGCGCGGGGTATTTATTTTATAAACTCATGTGCGCGACGATGACTT
TGAAAAAATCGAATCGTTTTCTTGACTTATGAGTGGCACAGCGGGTAATTTATAGCAACTTTAAGGGTATTTTTTTTTAC
GGACGACCAGAAGCACTATTTGCTTTATTAGTAGGGAAAGATTTAGGTCGGTGAAATTTGCCTCTTTAGTCGATATCCGC
GTGCGAGAAAGGCACAACCATGAGGACGGGAGGGGGTGATGAACGAACCACGACGACCTTGACGGGAGCGAGGCAGAAGC
TTGACAGGTGCGGGTGCGGGGGTTCACTGACGCTGAAGAAGGGTTGTGTTTAGATATTGGTCGAGGGAAGGGGGCAGTGG
GTTGGTCCACATATGAGGCAGCTTGGGGAGGACATTGCGAGATTGTTCATCCTACACCGGATAGAGGTTCGTTGGGTTTG
AGTGGAAAAACACGGTTTGAGGAGATAGAAGCCTCCAGAAAATTGATTTCCAAGCTTATAGTTTTTCATTAGATTAGTTT
TTGTAGCAACTATTTATGTATTTTTTAACAAATTTACGGCAGCAAATACTCCCCCGA-------------------TCTC
AAATAGGGCTAGAAAAAAAGAAAATATACGATCAATAATAATTGGATATAAAGAGCTACTCTAGAGAGAAGGATCCGGAA
GAGCTAGGCATCGGCATCGATGGGGGTATCTGGGAAAGGCAAGATGGACGGACACGGCCGGCCGGTGAAGAAGGAAATTG
GTACGCGTGCCCTGCGCGTGCGGTGACGGTGAGAGATTCCTATCGCG----TAGCTAGAGTTCCTCCCGTCCCCAGCCCG
GGCCGGACCGGCAGGTTCCCTCCCTATCCAGGTCTCAAGCCCTGGCTCTCGCGAACCCTCCTCCTCCGGCCAGGCAGGCG
GCTATATATACCACCGCAAAGCAGCGGCCATTGCTCGCTCCTCACCAAGCAAGAGCATAATTAATCAACCACAAGTCCAT
TTGCGAAGCACTCTCGCTCCGATCACAACCCAAGACCACCATGGCTGACAAGTGCGGCAACTGCGACTGCGCCGACAAGA
CCCAGTGCGTGTAAGTG-----CCTACCAGACAGCCAGATCGAGCTAATTAAGCCTCTTGTCGATCGAGCTAATCCATCG
ATCTGATCCGTCTTCTCTACGTGCCTCTAACTAGCCACTAGCTAAAAATCAACATCGTCTCTATGTAGTCCGATG-TTTG
TATTGATCTTT----GTCTTTGCTCTACTCTCTCTCT--CTGAACATGTTCCTGTGGTTTTT--------TCATGCGTGC
AGGAAGAAGGGCGACAGCTACGGCGTCGTCATAGTTGACACCGAGAAGAGGTACCGCGTACTATTTC-------------
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-------------------ACTTCATCCATCCGCCTGTTCGGCTAGTGGCTAGTTAGAGGACAGAAAAACTAGTCAGATC
GATGGCAAGTTATCTACGTGCCGTCTCGGCAAGTTA------------------TCGAGGTGCAGGAGACCGCGGACAAC
GACGGCAAGTGCAAGTGCGGCACCAGCTGCACCTGCACCAACTGCACCTGCGGCCACTAAAGA--------------GGC
CTCTCGTCA----CGTACGCGTCTACCCGTACTAGTAACCCGCCCCAATAAAAG----TCTGTACGTGTGTGTG----TC
TACGTCTCTTCTGTTGTCGTGCGAAAACCTGAAGGTTA-GCTGATGATGTGTGCGTAGGATATCGAATCGGCGTT---GA
TCGATCCCGTGT---TCCCCTGTAACCAGTGGCTGAACTTCAGGTTGTACTACTATGTGGTTGTGAGCCCGCACGCTCTG
TGCCATGTGACTTTCATTTCGTGTATCTTTGTTGCATGGGATGAAATTTATCGTGTGGTTTCTTAGCAACTCCCTCCGTC
TCCG-----------------------------------TCGCATAATATAAGATTGTTATATTATGGGACGGATGGAGT
AGTAAACGTCTCTTTGGTTGTCTTTTTATCGAGCGTATATACAGATCGGGTTGGCAATTAAGC-----------------
-------------------------------------AACACGCAACAAAACTTGTCTCGGCTTTATTGATGAAATTTTA
TTTTTGAGTTGTTTTATTATTGACGAAACTTAGCAGGTTCTTTACACTCC-CGCACGAAGGTTAGACACAGAACACACAC
A--AGTATAGGCAGTTATTGAGCGCTGCAGAAGGGAAACAAAACAAATCACAAAAAATGTTGGACCTAGCTTCTGCTAGA
CATAGTCTCCACAATGTCCATTGTTATCCAACAAAATCGGAGTCGGGATATGCACCCTATATAGTGTAGTGTGAAGAGTT
GCGAAAATCACCCAAGGGTTCGCATACCTATAAAT---------------------------------------------
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-------------------------------------------------------------------
>chr3A_1065
CCTCCC--------------------------------------------------------------------------
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----------------------------------------------------------------TCCGGCCCGGCGCGCG
GCTATATATACCACCGCAA-GCAGCGTCCATTG----CTCCTCACCAAGCAAGAGCAAAACCAATCAACCACAGGTCGAT
CGATTCGCGAAGTACCCTCCGATCACAACCCAAGACCGCCATGGCTGACAAGTGCGGCAACTGCGACTGCGCCGACAAGA
CCCAGTGCGTGTAAGTACAGTACCTACCACACAGCTAGATCGAGCTAAT-------------------------------
-------CCGTCTCTTCCACGTGCATCG-------------------------------TCTGTATAGTCCGATC-TTCG
TATCGATCTTT----G------CTCTACCCTGTCTGAAT----ACATGTTCCTGTGGTGGTTCTGTCATCTCATGTGTGC
AGGAAGAAGGGCGACGGCTACGGCATCGTCATGGTCGACACCGAGAAGAGGTACTGCGCACTAGTAGTAGTATTTCACTT
CGCTGATCCGTTCCGGTTTACCTTAAACTATACTATGTAGAAAGTAGAAACTAATCGGTTGAAACTGCCCACACACGCAC
ACACACACAAAGTAAATTTATGACATGGTCACACAAAGCTTAGCTTGCTGAGAGATTAGCCAAAATTAAATCCAGTTGCA
AGATCTACTCCATGGAAGGACTTCATCCAGGACGATCTTGATATAGCCTCCGGAACTAAATAAAAATTGATTTGACTAGA
GATCTCTATCGAAGACCTAACGTTGGCC--------CATGCATGTGCAGCCACTTCGAGGTGCAGGAGGCCGCGGAGAAC
GACGGCAAGTGCAAGTGCGGCGCCAGCTGCACCTGCACCAACTGCACCTGCGGCCACTGAACAGGCCCGCCCCGCTGGGC
CTCTCGGTCATCGCGTACGCCTCTACCCGTACTAGTAACCCGTGTCAATAAAGGTCGATCTGTACGTGTGTGTCTACGTA
TGTTGTGT---TGTCGTCGTGCAAGAACCTGAAGGTTG-GCTGATGC---GTGCATAGGATAGGATCTTGGATCAGCCGA
TCGGTCCCGTGTTCCTCCCCTGTAACCAGTGGCTGAGCTTCAGGTACTACTACTATGTGGTTGTGAGCTCGTACGTGTTG
TGGCATGTGACTTC-ATTTCGCGTATGCGTGTTGCACGGAATGAAATTTGTCGTGTGGTTAACTAGTACTTCCTCC----
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>SNPs
-----S----------------SS------------------SS--------S--S--------SS-------S------
-----S----------S-S--------------------S---S--SSS-S----S---SSSS-SSSSSSSS--------
----------S--S--------SS--S----------------------------S----S--S----------------
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--------------------------------S-SS-----S-S---S---------SSS-S----------------SS
-S-S------S---------------S----S-------S--S---SSS-------------------SSSS-SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS---S--SSS---S-SS---S--S-S-SSS-----SS-S-SS-SS-S----------------------
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---------------------------S---SS-S---------------------------------------------
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-------------------------------------S--S-S---S-S-S--S-S-----SSS-SSSSSSSSSSSSS-S
S-SSSS--S-SSSSSSSSSSSS-----SS-------SSSSSSSS-SSS--SSSSSS-S-S-SSSSSSSSSS---SS--S-
--------------------------------------------------------------------------------
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------S--S-------SSSSS-SS--SSSSSSS-SS-------------------------------------------
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-----------------------------------------------------S--SS-S-S---------S-SSSSSSS
--S-SS-S-SSSS-SSSSSS--SSSSSSSSSSSS-SS--SS--SSSS-SSSS-SSSSSSSSSSSSSSSSSSSSSSS----
-----S-----S-----SS-----S---------------------------S---------------------------
----S------------S----------------------S---------------------------------S-----
-----------------------------------------S---SSSSSS-----------------------------
----S---------S-----------------------------------------------------------------
------------------------------S---------S---------------------------------------
--------------------------------------------------------------------------------
------------------------------S----S-----------SSS-SSSSS---SSS-------------S----
-S------SS--------S-S-S---------S--SSSSSSSSSSSS-S-S--SS-SSS-SSSSS-SS--SSSSSS----
-----------SSSS----------S-----------S----------------S------S------------------
------------S---S----------------------------------------------------S------SS--
--S-------SSSSSSSSSSS-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S------SS---------------
--------------------------S-S-SS-S-S--------------------------------------------
-------------SS------------------------------------------------S----S-----------
---------------------------------------------------------------------------SS---
--------------------------------------S------------S----------S--S------S-------
-------------------S-------S-----------------------S----------------------------
---------------------------------------------------S---------S-----S---------S--
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--SS---S---S-SSS-S-----------S--S-SS---S-
-------------------------S----------S-------------SS-----------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S----SS-S--------------
------------------------------------------------S-S-----S--------------------S-S
SSS------S--------SS----S------S------------------S-----------------------------
-S---S--S-----SS-------------------------S--SS----------------------------------
--S----------S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_3400
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--------------------CGGCGTCCCTGACATGAATA----------------------------------------
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>reverse_6099
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------------------CAGAGGTGGATGCGAGGTTT------------------------------------------
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-------------------------------------------------------------------
