>input_sequence_63230
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------------------------------ATGAAGGACCTGGTGTCGTGCTTCAGCGAGCACGCCGTCAGGATCTCCGA
CGTCGCCTGCTCCGGCTCCGCCGCCGCCAATGCGGCTGCGGCGGCGGCGGCGGGGCCGGCCGACGGCGGGGGCAGGGCGG
CGGGGATCAGCGCGGTCACCACCGTGTACCGCTCGCGCCTCTCGGCGTCCGGGAAGGACCTGCTCGTCGACGTCACGTGG
GCGCGGTCGCCGGACGGCCCCGCGCTCTCCGTCGCCGTCCACGACGCCGGCGCCCCGCGCCACCGG---------GCCGC
CGCTGCCGCCCCGAGGCACCTGCACAGGCGGAAGGGGAGCGGGACGTTCACCGCGGGCAGCTGCGTGGTGGGCGTCTTCT
GGGACTACGCGGCGGCGCGGTACGGCGCCGGGCCCGAGCCCGTCTCCGGGTTCTACGTCGCCGTGGTCGCCGACGCCGAG
TTCGTCCTCCTGCTCGGCGACATGAGCCGGGGCTACGTGGAGCGGCTGCACGGCGGGATACCGGTGGCCGAGTCGCGGAT
GGCGCGGCGGCGGGAGCGGTTCGTCGGGTGCGGGTGCTGGTCCACAAAAGCGCGCTTCTTGGAGTCCGGCGCGGAGCACG
AGATCGGCGTCGGGCTGGAGGGCGACACGGAGGCGTGGGTGACCGTGGACGGCCGGAAGGTGGTGCAGCTGCGGCGGCTG
CGGTGGAACTTCCGCGGCAGCCACACCCTCATCCTGGACGGCGGCGCGCCGGTGGACATGACGTGGGACCTCCACGGCTG
GCTCTTCCACGCGATCGACCCGTCCGCCTCCTCGTCCAGCGCCGTCTTCACGTTCCACGCGCGCGGCGCGTCGGAGACGA
GGCTGTGGATG---GAGGACGACGGCGCCGCCAGCAGCAGCGGCGACAGCGACAAGGAGCACGAGAAGCCTGTGGCGCCG
G------CGCGCGGCCAGCGACAGAAGCAGGGGCCGTCAGGGCAGGGTTTCTGCCTGCTCATCCAAGGCTTCAGGAGCTC
CTCCAAGATCACCTGA----------------------------------------------------------------
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>chr2B_1_TraesCS2B01G308700
CCGTTTCGCCCCTACAGCTACAGGTGCCGACCGTTTCGTTTCGGAAGTTTCAGTGGCCATTTAGGAAAGCAGTAAAGGCC
TCCTCAAGAAGAAGATGCGTTTTTTCTCTCCCTGCCCTGCCTGACTGCTATGCCTAT------GAGGACTATAGGTTATT
CCTTCCGTTTACCCACTCTGTTTCATAGGCCTCCTTTTCCGTTTCCGTTTCCGTT----------CGTTCGCAGTTG---
---------------GAACGAAATGCAAGAACATGACGCAAACATGATTGAATTTGCTTTGCGCGGACCGATCGAATTTG
TTCTCCACTAGCGACCTACTACTATTGATAAGAAGAACTACTACTACTATAGGCCTCCTTTGGTTTGGAGGAATTTTATA
GGATTTTCATAGGATAGGATTTCTATAGGAAAAATTCTTTCAGAGCTCTTTGGTTTGTAGGAATGAAATCCTATTCCTAT
GGAGAAATTCTTCCTATCCTCCACATTTCATAGGAAAACAAACATTAGCCTAGACTCAATGGAAAAAATCCTATGGTGCG
AATCAAAGGGCATCTCTTTTTCTATTCCTATGCATAGGATTTGAGATGCATGTCATCTCATTTCCTATGACTTTCCTATT
CCTATGATTTTCCAATCCTATGAACCAAAGGAGGCCTAAAGCACAAGGAAGCATACTAG---TAGGAGGGAATACAGTAC
AGTACTAA-----TAGTTGAGGTCGAGCACAAGCACAAAAGCCGTTGGAGTTGGAGGGGAAACCCCTGCAGAAAGTGAAG
ATTTTATACCTAGCTTGCGAGCACCAGCCTATTGCCTGTCAGGC------TCAGGCTTCCCGATTAAGAGATACCTTTCT
CCTGCCATTACCGAACTTGCTTCATTCCCTTCCTG----T----TGCCCGTCGCCGTCTGCAAAATGCCATCCGCGCGCT
AGCCACCAAAGTGGTTAGTCGCCAAACCCCAAAGCGATTCCTCCGA---GTGCTCC------TACCGTGCCGTGCCTGCA
CGTACGTAACCACGCCT--GACTG---GGCATGAAGGACCTGGTGTCGTGCTTCAGCGAGCACGCCGTCAGGATCTCCGA
CGTCGCCTGCTCCGGCTCCGCCGCCGCCAATGCGGCTGCGGCGGCGGCGGCGGGGCCGGCCGACGGCGGGGGCAGGGCGG
CGGGGATCAGCGCGGTCACCACCGTGTACCGCTCGCGCCTCTCGGCGTCCGGGAAGGACCTGCTCGTCGACGTCACGTGG
GCGCGGTCGCCGGACGGCCCCGCGCTCTCCGTCGCCGTCCACGACGCCGGCGCCCCGCGCCACCGG---------GCCGC
CGCTGCCGCCCCGAGGCACCTGCACAGGCGGAAGGGGAGCGGGACGTTCACCGCGGGCAGCTGCGTGGTGGGCGTCTTCT
GGGACTACGCGGCGGCGCGGTACGGCGCCGGGCCCGAGCCCGTCTCCGGGTTCTACGTCGCCGTGGTCGCCGACGCCGAG
TTCGTCCTCCTGCTCGGCGACATGAGCCGGGGCTACGTGGAGCGGCTGCACGGCGGGATACCGGTGGCCGAGTCGCGGAT
GGCGCGGCGGCGGGAGCGGTTCGTCGGGTGCGGGTGCTGGTCCACAAAAGCGCGCTTCTTGGAGTCCGGCGCGGAGCACG
AGATCGGCGTCGGGCTGGAGGGCGACACGGAGGCGTGGGTGACCGTGGACGGCCGGAAGGTGGTGCAGCTGCGGCGGCTG
CGGTGGAACTTCCGCGGCAGCCACACCCTCATCCTGGACGGCGGCGCGCCGGTGGACATGACGTGGGACCTCCACGGCTG
GCTCTTCCACGCGATCGACCCGTCCGCCTCCTCGTCCAGCGCCGTCTTCACGTTCCACGCGCGCGGCGCGTCGGAGACGA
GGCTGTGGATG---GAGGACGACGGCGCCGCCAGCAGCAGCGGCGACAGCGACAAGGAGCACGAGAAGCCTGTGGCGCCG
G------CGCGCGGCCAGCGACAGAAGCAGGGGCCGTCAGGGCAGGGTTTCTGCCTGCTCATCCAAGGCTTCAGGAGCTC
CTCCAAGATCACCTGATCTGTACATTCCGCGACAGGATTTATTTCTTC---ACCAATCTTTTTCGACTTCTTCTTGGTTT
GTGTGCTTCGAAATGAAATTTAGGATGGATGTACT-ACTGATTGATGCCGGTTGTGAATTGATCCGATGCTTCACAGAAT
CACACGAGAGCGTGAAGCTGTGAATGGTAGGTAGACGTG----GGGAGGTTCATGTTGACATAGTAGCAGAAGAAGGCGT
TGGTTTTCCGTTTTTTGCTTGCTGATTTGATTGATACAGCAGTACCTGACTGTGAATGCGTTGTGGATTTCAGAAATATA
CAGCA-------AAGGTTGCAACATCTTGTTTCAACTGTTTGCTCCTTTTCATGGCACATAGCCACAAAAACATTTTGTT
TGAGCATGTTTGTATGGGTCATGTAAGCTGATTTGCACCCTTAAAACCGCAATATTTGGGATATTGACAC------GCAA
GAGTGATAAACGAGCAAGTTAAGAAAACTT-ATGGATATGTCAAGGCGGGTGCAGATGAGGATAAAAACACTTTTTCTCC
ACAATCCTTGTCATTCTCTAGCTTTGAGTAAACCGCGCACAAAACCGTAGCCATCACCGACGTCGATTGTGAGCTTTA--
AACAAAACTTGTGTTTGACATATCAACTCTTCTTCTAATCTAAAATAAAATCGGGTCCCTCTCAATTATTCCAGGACATG
ACTGCCACTCTAATGAATCCGAGAGGTCCCGAAGAAAAGAAGCAAATGAAACATGGTCCAGCCTTACTGGTCTACACA--
-------------TTGTGGAATTCTGAAAAAGAATCTATCAGATATGATTACACACAAATTTCCGGGCATGTATTGGTTG
CACAGAGACTTGGGGACGTTTATCCGATGCAATGGTGGCATAAGTTCAGGATCAGGATAGTAGTCTAGTCCTCTGATCAA
GATGGCTTTGCTAATTTATTGACCTACTGTTTGCCTTCATTGTGGCCATTCAGCTGCATAACAATGCTATTCACCTGCCT
GCGAAAGGTCAACAT
>chr2D_1
CCGTTTCGCCCCTACAGATAGGTGCCC--ACCGTTTCGTTTCGGAAGTTTCAGTGGCCATTTAGGAAAGCAGTAAAGACC
ACCTCAAGAAGAAGATGCGTTTTTTCTCT-----CCCTGCCTGACTGCTATGCCT-------------------------
CCTTCCGTTTACCCA---TGTTTTATAGGCCTTCTTTTCCGTT------TCCGTT----------CGTTCGCAGTTGGAA
GCCTCCCATCCCAACGAACGAAATGCAAGAACATGACGCAAACATGATTGAATTTGCTTTGCGCGGACCGATCGAATTTG
TTCTCCACTAGCGACCTACTACTACTGATAAGAACTACTCCTACTACTAAAG----------------------------
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-----------------------------------------CAGAAGGAAGCATACTACTACTAGGAGGGAATACAGTAC
AGTACTAGAGTACTAGTTGAGGTCGAGCACAAGCACAAGAGGCATTGGAGTTGGAGGGGAAACCCCTGCAGAAAGTGAAG
ATCTTATACCTAGCTTGCGAGCACCAGCCTATTGCCTGTCAGGCTCAGGTTCAGGCTTCCCGATTAAGAGATACCTTTCT
CCTGCCATTACCGAACTTGCTTCATTCCCTCCCTTCCTAT----TGCCCGTCGCCCTCTGCAAAATGCCATCCGCGCGCT
AGCTACCAAAGCGGTTAGTCGCCAAACCCCGAAGCGATTCCTCCTCCTCGTGCTCC------TGGCGTGTCCTGCCTGCA
CGCACGTAACTCCTCCGCCGACTG---GGCATGAAGGACCTGGTGTCGTGCTTCAGCGAGCACGCCGTCAGGATCTCCGA
CGTCGCCTGCTCCGGCTCCGCCGCCGCCAATGCGGCCGCGGCAGCGCCGACGGGGCCAGCGGACGGCGGGGGCAGGGCGG
CGGGGATCAGCGCGGTCACCACCGTGTACCGCTCGCGCCTCTCGGCGTCCGGCAAGGACCTGCTCGTCGACGTCACGTGG
GCGCGCTCGCCGGACGGCCCCGCGCTCTCCGTCGCCGTCCACGACGCCGGCGCCCCGCGCCACCGG---------GCC--
----GCCGCCCCGCGGCACCTGCACAGGCGGAAGGGGAGCGGCACCTTCACCGCGGGCAGCTGCGTGGTGGGCGTCTTCT
GGGACTACGCGGCGGCGCGGTACGGCGCGGGGCCCGAGCCCGTCTCCGGGTTCTACGTCGCCGTGGTCGCCGACGCGGAG
TTCGTCCTCCTGCTCGGCGACATGAGCAAGGGCTACGTGGAGCGGCTGCACGGCGGGATACCGGTGGCCGAGTCGCGGAT
GGCGCGGCGGCGGGAGCGGTTCGTCGGGTGCGGGTGCTGGTCCACGAAAGCGCGCTTCTTGGAGTCCGGCGCGGAGCACG
AGATCGGCGTGGGGCTGGAGGGCGACACGGAGGCGTGGGTCACCGTGGACGGCCGGAAGGTGGTGCAGCTGCGGCGGCTG
CGGTGGAACTTCCGCGGCAGCCACACCCTCATCCTGGACGGCGGCGCGCCGGTGGACATGACGTGGGACCTCCACGGCTG
GCTCTTCCACGCGATCGACCCGTCCGCCTCCTCGTCCAGCGCCGTCTTCACGTTCCACGCGCGGGGCGCGTCGGAGACGA
GGCTGTGGATG---GACGACGACGGCGCCGC---CAGCAGCGGCGACAGCGACAAGGAGCACGAGAAGCCTCTGGCGCCG
G------CGCGCGGCCAGCGACAGAAGCAGGGGCCGTCAGGGCAGGGGTTCTGCCTGCTCATCCAAGGCTTCAGGAGCTC
CTCCAAGATCACCTGATCTGTACATTCCGCCACAGGAT-------TTC---ACCAATCTTTTTCGACTTCTTCTTGGTTT
GTGTGCTTGGAAATGAAATTTACTAGGATGGATG-TACTGATTGATGCTGGTTGTGAATTGATCCGATGCTTCACAGAAT
CACACGAG--CGTGAAGCTGTGAATGGTAGGTAGACGTGCGTGCGGAGGTTCATGTTGACATAGTAGCAGAAGAAGGCGT
TGGTTTTCCGTTTTTTGCTTGCTGATTTGATTGATAC--------CTGACTGTGAATGTGTTGTGGATTTCAGAAATATA
CAGCAAAGGACAAAGGTTGCAACATTTTGTTTTAACCGTTTGCTCCTTTTCATTACACATAGCCACAG---CATTTTGTT
TGAGCATGTTTGTATGGGTCGTGTAAGCTGATTTGCACCCTTAAAACCGCAATATTTGGGATGCTGACAC------G---
---TGCTAATCAAGCAAGTTAAGAAAACTTTATGGATATGTCAAGCCGGGTGGAGATGGGCATGAAAACACTTTTTCTCC
ACAATCCTTGTCATTCTCTAGCTTTGAGTAAGCCGCGCACACAACCATAGCCATCGCCGACGTCGATTGTGAGCTTTA--
AACAAAACTTGTGTTTGTCATATCAACTCTTCTTCTAATCTAAAATAGAATTGGGTCCCTCTCAATTATTCCAGGACATG
ACTGCCACTCTAATGAATCCGAGAGGTCCCGAAGAGAAGAAGCAAATGAAGCATGGTCCAGCCTTAC-------------
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>chr2A_31
------------------------------CCGTTTCGTTTCGGAAGTTTCAGTGGCCATTTAGGAAAGCAGTAAAGACC
-----------AAGATGCGTTTTTTCTCT-----CCCTGCACGACTGCTATGCCTACGACTACGAGGACTCTCGGTTCTT
CCTTCCGTTTACCCA---TGTTTTATAGGCCTCCTTTTCCGTTTCCGTTTCCGTTTCCGTTCGTCCGTTCGCAGTTGGAA
GCCTCCCATCCCAACGAACGAAATACAAGAACATGACGCAAACATGATTGAATTCGCTTTGCGCGCACCCGTCGAATTTG
TTCTCCACTAGCGACCTACTACGACTGATAAGAACTACTCCTACTACTAAAG----------------------------
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-----------------------------------------CAGAAGGGGGCA---------TAGGAGGGAATACAGTAC
AGTAGAGTAGT-------------------------------------AGTTGGAGGGGAAACCCCTGCAGAAAGTGAAG
ATTTTATACCTA------------------------------------------GCTTCCCGATTAAGAGATACCTTTCT
CCTGCCATTACCGAACTTGCTTCATTCCCTCCCTTCCTTCCTACTGCCCGTCGCCCTCTGCAAAATGCCGTCCGCGCGCT
AGCTACCAAAGTGGTTAGTCGCCAAACCCCAGACCGATTCCTCCTCCCCGTGCCCGTGCCTTTGGCGTGCCGTGCCTGCA
CGTACGTCCACCGCCCGACTGCTTAGTGGCATGAAGGACCTGGTGTCGTGCTTCAGCGAGCACGCCGTCAGGATCTCCGA
CGTCGCCTGCTCCGGCTCCGCCGCCGCCAATGCGGCCGCGGCGGCCACGACGGGGACGGCCGACGGCGGGGGCAGGGCGG
CGGGGATCAGCGCGGTCACCACCGTGTACCGCTCGCGCCTCTCGGCGTCCGGCAAGGACCTGCTCGTCGACGTCACGTGG
GCGCGCTCGCCGGACGGCCCCGCGCTCTCCGTCGCCGTCCACGACGCCGGCGCCCCGCGGCACCGGGCCGCCGCCGCC--
----GCCGCCCCGCGCCACCTGCACAGGCGGAAGGGGAGCGGCACCTTCACCGCGGGCAGCTGCGTGGTGGGCGTCTTTT
GGGACTACGCGGCGGCGCGGTACGGCGCGGGGCCCGAGCCCGTCTCCGGGTTCTACGTCGCCGTGGTCGCCGACGCCGAG
TTCGTGCTCCTGCTCGGCGACATGAGCCGGGGCTACGTGGAGCGGCTGCACGGCGGGATACCGGTGGCCGAGTCGCGGAT
GGCGCGGCGGCGGGAGCGGTTCGTCGGGTGCGGGTGCTGGCACACCAGGGCGCGCTTCCTGGAGTCCGGCGCGGAGCACG
AGATCGGCGTCGGGCTGGAGGGCGACACGGAGGCGTGGGTCACCGTGGACGGCCGGAAGGTGGTGCAGCTGCGGCGGCTG
CGGTGGAACTTCCGCGGCAGCCACACCCTCATCCTGGACGGCGGCGCGCCGGTGGACATGACGTGGGACCTCCACGGCTG
GCTCTTCCACGCGATCGACCCCTCCGCCTCCTCGTCCAGCGCCGTCTTCACGTTCCACGCGCGCGGTGCGTCGGAGACGA
GGCTGTGGATGGACGACGACGACGGCGCCGCCAGCAGCAGCGGCGAAAGCGACAAGGAGCACGACAAGCCTCTGGCGCCG
GCGCCGGCGCGCGGCCAGCGACAGAAGCAGGGGCCGTCAGGGCAGGGGTTCTGCCTGCTCATCCAGGGCTTCAGGAGATC
CTCCAAGACCACCTGATCTGTACATTCCGCCACAGGAT-------TTCTTCACCAATCCTTTTCGACTTCTTCTTGGTTT
GTGTGCCTGGAAATGAAATTTAGGGTCGATGTACTTACTGATTGATGCTGGTTGTGAATTGATCCGATGCTTCACAGAAT
CACACGAG--CGTGAAGCTGTGAATGGTAGGTAGACGTGCGTGGGGAGGTTCATGTTGACATA--------AGAAGGCGT
TGGTTTTCCGTTTTTTGCTTGCTGATTTGATTGATAC--------CTGACTGTGAATGTGTTGTGGATTCCAGAAATATA
CAA------ACAAAGGTTGCAACATTTTGTTTAAACCGTTTGCTCCTTTTCATTGCACATAGCCACAG---CATTTTGTT
TGAGCATGTTTGTATGGGTTGTGTAAGCTGATTTGCACCATTAAAACCGCAGTATTTGGGATGCTGACACGCAAGAG---
---TGATAAACAAGCAAGTTAAGAAAACTTTATGGATATATCAAGCCGGGTGGAGATGGGGATAAAAACACTTTTTCTCC
GCAATCCTTGTCATTCTCTAGCTTTGAGTAAACCGCGCACACAACCATAGACATCGCCGACGTCGATTGTGAGCTTTATA
AACAAAACTTGTGTTTGACATATCAACTCTTCTTCTAATCTAAAATAAAATGGGGCCCCTCTCAATTATTCCGGGACATG
ACTGCCACTCTCACGAATCCGAGAGGTCCCAAAGAGAAGAAGCAAATGAAACATGGTCCAACCTTACGAGTGTGGAATTC
TGAAATGAAACATTTGTGGGATTCTGAAAAACAAAACCAATAAGATATTATATCGATTGCAAAA----------------
-----AGACTTGGGGACGTTTATCCGATGCAATGATGGCATAAATTCAGGAT----------------------------
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>SNPs
-----------------S--SSS-SS-SS------------------------------------------------S--
S----------------------------SSSSS----------------------S-------------S-S----S--
---------------SSS-----S--------------------------------------------------------
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------------------------S---------SS---S---------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--------------S---------------------
-------S------------------------------S--S-S------------------------------------
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------------------------------S---S--------------------S------------------------
---S----------------------------------------SS-----------------SS---------------
-----------S-S--S---------------------------------------------------------------
------------------------------------S---------S--S------------------------------
----------------------------------------------------S---------------------------
-----S------------------------------------------------------------------------SS
SSSS---------S----------------------------S--S----------------------------------
----------------------------S---------------------------------------------------
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---------------------------------------------S----------------------------------
----------------------------------------S---------------------------------------
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----------------S------------------------------------------------------S--------
-----------------------------------------------S--------------------------------
------------------------------S-------SSSSSSS-----------------------------------
--------S---------------------------------------S-------------------------------
--------SS----------------------------------------------------------------------
-------------------------------------SSSSSSSS-------------S---------------------
-------------------------S------S---S----------------S-------------SSSS---------
--------------------S-----------------------------------------SS-------------SSS
SSS--------S---------------------------------S------S-----S---------------------
-----------------------------------------S----S--------S------------------------
---------------------------------------------------S----------------------------
-----------------------------------S-------------------------------SS--S-SS-SS--
-------------------S-----------S--SSSSSSSS-S--SS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS-----------------------------S--------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_762
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----------------------TCGAGCACAAGCACAAAAGC--------------------------------------
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>reverse_2606
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---------------------------------------------GCGGGTGCAGATGAGGATAA---------------
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