>input_sequence_63208
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------------------------GAGCTCTAGTTCCTTTTCTTCCCTTAGCTCTTCCTCGCTAGCCAAGTAGCCCGGGC
AGTCACACTGATTGTGCTCGAGAATCAAGGCATGAAAGCGACGACACCTCGCGGCGGCGGCGTGGAGACTGCGAAGCCGA
AGAAGAGGAAGAAGGCGGGCGCGGGTGGGTTCATCTTTGGCTGCGGCGGCTCCAGGTCTGTGGCCGTCGTCGCAGACAAT
CTCTCCACGATGGCACTGGCCAAGTCGTCGTCGTCGTCG---AGCGCCGGACCAACGGCGGAACCAGCGCCCGCAGCGAA
GCCCAAGGCGCCGGCCTACCACGACGCCGAGGGCGCGCCGAGCGTGGACGCGCTCCTGGGCCAGCTCCGCGAGCTGGAGC
GCGGCGTGCGCGCGCTGGGCGTCCGGGCCCGGGAGGAGGACGGCGTCGCGCAGGCGTGCCGTTGCAGCGCGAGGCCGCCG
CGGCACCGGCA------------AGGTGGGCGCGGTCGGCTGGAGGAGGAGAGCGTGGCGGTGGTGACGGAGACGGAGGA
CCCGCTGGGCGAGTTCCGGCGGTCCATGGCGGAGATGGTGGTGGAGAACGGGATCACGGGCGGCGCGGAGCTGCGGGAGC
TGCTGCAGCGGTTCCTGTCGCTCAACGCGGCGCGCCACCACCACCTCATCCTCCGCGCCTTCGCGGACGTCTGGGAGGAG
CTCTTCGCCGGCGACCCCACGAAG---A------AGCTGAAGCAGAAGCGTCCTGCTGTCTCCCCTGCAGGCCATGGCGC
CCGGGCGAGCAGCTAGCTGCACGGCACGTACGTACCGCGCACTGACAAGTTAACTACAGTCCGTAAACTTCCCCATGCAC
GCAC--------CCTCGGGAATTGTTGCCGTCCGATCCGATGAAAACATGCGTCGCGTGCGTGGTTTTCAGTGCCGTGAT
GAGAAGGAGCGTGCATGTGGCTGTGGCTGGCACCTGAGCCGAGCCTGAATCAGTTCTCTCTTCCGTTAATCCTGTAAAGA
TATCAT----CGTACC-TACATTTCCCGTG--------------------------------------------------
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>chr4D_1_TraesCS4D01G316300
TCTAGATTAGACCCCAGGAGTAGTGCGATGGCAAGTTCGGTAACCTACCGTTCTTGTGTCGAGCAAATGAGGTATGATGA
AGTGAAGCAACGAGAGAGAGACGCCACTTCGCCGGAGTGCATCAACGGATATCGACACATGCGGATGAGATGAAATGAAT
AGGACAGCAACTCAGCAAGCAAACAAAGTGGCGTCCGGTTCCAGCACGCAG--CGCGTTTCTTCCAAGGCATCTCAACTC
ATATATAGTACTACTAGCACTGTATTAGTTTGTAGCGACAGTAGGACCCCTCCCCTCTGATC--CAAATCAAATAGGT--
-----TACCCATAATCAGGCCCATCCCACCA-TGATCCAAATCTCCCGCCACCTCGTTCGTTGGCGCTTCCCTCGTCCGT
TTCTCTGTTCCGCCCGCTGCAGGTAGCGCGGGACG----CAAGCGTCGTGGATGAG--GACGCTAGCTTTGCCGTTGGTT
TCCCGGTCGTAGCTCGCTAGCCTAGCTCCGTTTCCGGGCCTTGCTTGCGTGGACCTGTAGTTGTCTTGCGGATGCACACC
TACGGCTACGGTACGTACCTCTCATCTCATGGAGGTGGACATCACCGCAAGAAAACGCCAG-------------TGCCCG
CTGAATTTTAGTTTTTGGAGACTCGATCGTCCGGA-------ACACATACGCTAGCCTGCATGCGTCTCACTGTCGTTTC
AGCAACCA---------CGCCGTGCGCTGATGGAAACACTGTTCTTTTG------TTTTTCAGTTCGTCGGGTTCGTGAT
AATTACTACTGCTGGTA--------GCAATCAGTCGGTTTACCAGACAGTGACATTGACCGCCGAACAGCTGGTGCCCTG
ATACTACTAGTTTTTAGACGATTG-AATCCAGTTACTTGGATCGATATGCGTGTCTCTCTCTCTGCAGTCTGCACACGCC
ACTAGAGCGCAACGTGCCCGCAACAAAAGAATTGTGTGACACCAGTGCTGCATCTTCCTG--GCGCGCTCGGTTTCACTC
GCCCACCCGGCTCTTATTAAGCCCGAGCTCTAGTTCCTTTTCTTCCCTTAGCTCTTCCTCGCTAGCCAAGTAGCCCGGGC
AGTCACACTGATTGTGCTCGAGAATCAAGGCATGAAAGCGACGACACCTCGCGGCGGCGGCGTGGAGACTGCGAAGCCGA
AGAAGAGGAAGAAGGCGGGCGCGGGTGGGTTCATCTTTGGCTGCGGCGGCTCCAGGTCTGTGGCCGTCGTCGCAGACAAT
CTCTCCACGATGGCACTGGCCAAGTCGTCGTCGTCGTCG---AGCGCCGGACCAACGGCGGAACCAGCGCCCGCAGCGAA
GCCCAAGGCGCCGGCCTACCACGACGCCGAGGGCGCGCCGAGCGTGGACGCGCTCCTGGGCCAGCTCCGCGAGCTGGAGC
GCGGCGTGCGCGCGCTGGGCGTCCGGGCCCGGGAGGAGGACGGCGTCGCGCAGGCGTGCCGTTGCAGCGCGAGGCCGCCG
CGGCACCGGCA------------AGGTGGGCGCGGTCGGCTGGAGGAGGAGAGCGTGGCGGTGGTGACGGAGACGGAGGA
CCCGCTGGGCGAGTTCCGGCGGTCCATGGCGGAGATGGTGGTGGAGAACGGGATCACGGGCGGCGCGGAGCTGCGGGAGC
TGCTGCAGCGGTTCCTGTCGCTCAACGCGGCGCGCCACCACCACCTCATCCTCCGCGCCTTCGCGGACGTCTGGGAGGAG
CTCTTCGCCGGCGACCCCACGAAG---A------AGCTGAAGCAGAAGCGTCCTGCTGTCTCCCCTGCAGGCCATGGCGC
CCGGGCGAGCAGCTAGCTGCACGGCACGTACGTACCGCGCACTGACAAGTTAACTACAGTCCGTAAACTTCCCCATGCAC
GCAC--------CCTCGGGAATTGTTGCCGTCCGATCCGATGAAAACATGCGTCGCGTGCGTGGTTTTCAGTGCCGTGAT
GAGAAGGAGCGTGCATGTGGCTGTGGCTGGCACCTGAGCCGAGCCTGAATCAGTTCTCTCTTCCGTTAATCCTGTAAAGA
TATCAT----CGTACC-TACATTTCCCGTGAATATTGCGTGCCATTGTCGCTTTGTTTG---------------------
--------------------------------------------------------------------------------
-------CTGCTCATGCGTGGCGTGCGTTGCCTCTAGTGGCAGTCGACC------------AAACGTGGCGC------CG
GAGGCAGCGGGGGATGGGCGGCTGATCGCCATGGATCCAGGACCATCATGAGGCCGAGTTGCTACATGCTTGGTGGGAGA
GGAAGGCAGACAGGGCGTGGTCTGCTCGTCGGTG--------GGCAGCAAAGGGCACGAGCCCACCAAACATTCTGGTTC
GGTCGCGGGGTCGATGGCGAGATATCGAGTACTTAAACGGGATCGAATTGATTGAG--------TGACTGACTGACTGAT
GTGAACTGCGTCGGTGCGAGATCGATCGATCGTGCGCGCCAAGCCTCACGCCGTGACTGAAAAGGCCGGCCGGGTTGCTT
GGTCAGGCATCGGATCGCGGCATGTTTGCCGGCGATCGCAAGGAACATATATCCCATCGATCGCCCCTCTCACG------
---------------------TCCGTGCTAGTATTTGTTAGTTGTCGTGGTTCGTACCCATGCCTTCGTGTCCGTATAGG
TGCTTGACATAGAAATTCTATGACTTTTCCCGGGTG----------------CTTGACAAATACT--TATAACAAATTAA
GCGGTTCATATGGCTGGGTCAATTAGCATGTGATGCATGCGTCCAACGATTACGCCGAATGATGAGCTGATTGACTGGAA
GCGCGCGGCCGGCTGCGGTGTTGGTTGCAGGATCATGCATGCATCCCATCCCATTGTTAGAGTCTCGAACAAAATGAAGC
CTCCCCGTGCGTTTGGATTTTCGACCGTCCGATCGAGCTCCCGGACGCGTCCTGGCCGTCGGATCGCGAGGTAGAGCAAT
CCGGGCCGTCCGATCGCGAGATGGAGCGTTCTGGCCGTCGGATCGAGCCCTATGCTCAGGTTCGTGCCACCGCCTGTAAA
TCTCGTGCCCCATGGAGGGCATTCTTGACTTTTCACACGTCGGCGTATAAAAGGAACTCGCCCTCCGTTGCGCCCGCTGC
TTCACTCCAGCCGCCGC
>chr4B_1
TCTAGATTAGACCCCAGGAGTAGTGCGATGGCAAGTTCGGTAACCTACCGTTCTTATGTCGAGCAAATGAGGTATGATGA
AATGAAGCAACGAGAGAGAGACGCCACTTCGCCGGAGTGCATCAACGG--ATCGACACATGCGGATGAGATGAAATGAAT
AGGACAGCAACTCAGCAAGCAAACAAAGTGGCGTCCAGTCCCAGCACAAGCACAGCGTTTCTTCCAAGGCATCTCAGCTC
ATAGTAGTAGT-------A--GTATTAGTTTGTAGCGACAGTAGGACCCCTCCCCTCTGATCCACAAATCAAATAGGTTA
GTACATATGTATAATCAGGCCCATCCCATGAT-----CAAATCTCCCGTCACCTCGTTCGTTGGCGCTTCCCTCGTCCGT
TTATCTGTTCCGTCCGCTGCAAGTAGCGCGGA---------------------------------------CCGCTAGTT
TCCCGATCGTAGCTTGCTAGCTTAGGTCCGTTTCTGGGCCTTGCTTGCGTGGACTAGGACTTGTCTTGCGGATGCAAACC
TACGGCTACCGTACGTACCTCTCATCTCATGGAGGTGGACATCACCGCAAGAAAACGCAAGCGGGCGCAGCCAATGCCCG
CTGAATTTCA-------GAGACTCGATCGTCCGGACTCCGGAACACGTACGCTAGCCTGCATGCGTCTCACCGTCGTTTC
GGCAACCATGCCGGTCGCGCTGTGCGCTGATGGAAACGCTGTTTTTCTTTCTCTTTTTTTCAGTTCATCTGGTTCGTGCT
AATTATTACTGCTGGTCAGCTGGTGGCAATCAGTCGGTTTACCAGACAGTGACATTGACCACCGAACAGCTGGTGCTCTG
ATACTACTTGTTTTTAGTCGATTGAAATCCAGTTACTTGGATCTATATGCGTGTCTG--TCTCTGCAGCCTGCACACGCC
ATTAGAGTGCAACGTGCCCGCAACAAAAGAATTGTGTGACGCTGGTGCTGCAGCTTCCTG--GCGCGCTCGGTTTCACTC
---CACCCGGCTCTTCTTAAGCCCGAGCTCTAGTTCCTTTTCTTCCCTTAGCTA--CCTCGCTAGCCAAGTAGCCAGGCC
AGTCACACACACTGCGCTCGAGAATCAAGGCGTGAAAGCGACGACACCTCGCGGCGGCGGCGCGGACACTGCCAAGTCGA
AGAAGAGGAAGAAGGCCGGCGCGGGCGGGTTCATCTTTGGCTGCGGCGGCTCCAGGTCGGTGGCCGTCGTCGCAGGCAAT
CTCTCCACGATGGCACTGGCCAAGTCGTCGTCGTCGTCG---AGCGCCGCGCCAACGGCGAAGCCAGCGCCCGCAGCGAA
GCCGACGGCGCCTGTCTGCCACGACGCCGAGGGCGCGCCGAGCGTGGACGCGCTCCTGCGCCAGCTCCAAGAGCTGGAGC
GCGGCGTGCGCGCGCTGGGCGTCCGGGTCCTGGAGGAGGACGGCGTCGCGCAGGCGTGCCGGTGCAGCGCGAGGTCGCCG
CGGTACCGGCGGGACGCGTGGGGAGGTCGGCGCGGGCGGCTGGAGGAGGAGAGCGTGGCGGTGGTGACGGAGACGGAGGA
CCCGCTGGGCGAGTTCCGGCGGTCCATGGCGGAGATGGTGGTGGAGAACGGGATCACGGGCGGCGCGGAGCTGCGGGAGC
TGCTGCAGCGGTTCCTGTCGCTCAACGCGGCGCGCCACCACCACCTCATCCTCCGCGCCTTCGCCGACGTCTGGGAGGAG
CTCTTCGCCGGCCCCGGCCGCGACCCCATGCAGAAGCAGAAGCAGAAGCGCCCTGTTGTCTCCCCTGCAGGCCACAGCGC
CCGGGCGAGCAGCTAGCTGCACGGCACGTACGTACTGCGCACTGACAAGTTAACTACAGTCCGTAAACTCCCCCATGCAC
GCACGCACCCACCCTCGGGAATTGTTGCCGTCCGATCCGATGAAAACATGCGCCGCGTGCATGGTTTTCAGTGCCGTGAT
GAGAAGGAGCGTGCA------TGTGGCTGGCACCTGAGCCTCGCCTGAATCAGTTCTCTCCTCCGTTAATCCTGTAAAGA
TATCAT----CGTACGTTACATTGCCCGTGAATATTGCGTGCCATTGTCGCTTTGTTTG---------------------
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-------CTGCTCATGCGTGGCGTGCGTTGCCTCTGGTGG---TCGACCGGTCGGTCGGGCAAACGTGGCGC------CG
GAGGCAGCGGG-GATGGGCGGCTGATCGCCATGGATCCATGACCATCATGAGGCCGAGTTGCTGCATGCTTGGTGGGAGA
GGCAGGCAGGCAGGGCGTGGTCTGCTCGTCGGTG--------GGCAGCAAAGGGCACGAGCCCACCAAACATTCTGGTTC
GGTCGCGGGGTCGATGGCGAGATATCGAGTACTTAAACGGGATCGAATTGATTGACTGACTGACTGACTGATTGATTGAT
GTGAGCTGCGTCGGTGCGAGATC----GATCGTGCGCGCCAAGCCTCACGCCGTGACTGAAAAGGCCGGCCCGGTTGCTT
GGTCAGGCATCGGATCGCGGCATGTTTGCCGGCGATCGCAAGGAACATATATCCCGTCGATCGCCCCGCTGACGTCCGTG
TTCT---------------------------------TTACTTGTCCGGGTTCGTGCCCATGCCTCTCTGTCTGTA--GG
CGCTTGACATAGAAATTCTATGACTTTTCCCGGGTGTCACCTGTCATGGGTGCCTGACAAATACCAGTATAACAAATTAA
GCGGTTCATATGGCTGGGTCAATTAGCATGTGATGCATGCGTCCAACGATTACGCCGAGTGATAAGCTGATTGACTGGAA
GCGCGCGGCCGGCTGCGGTGTTAGTTGCAGGATCATGCATGCAT------------------------------------
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>chr5A_145
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----------------------------------------------------------------ATGAAATGAAATGAAT
GGGACAGCA----AGCAAGCAAACAAAGTGGCGTCCGGTTCCAGCACA--CACCGCGTTTCTTCCAAGGCATGTAGAT--
---GTAGTAGT-------ACTGTATTAGTTTGTAGCGACAGTAGGACCCTTCTCCTCTGATCCACAAATCAAATTGGT--
-----TATGTATAATCAGGCCCGTATCGTACGTGATCCAAATCTCCCGCCACCTCGCCCGCTGGCGCTTCCCTCGTCTTG
CTCCCTGTTCCGCCCGCTGCAGGTAGCGCGGGACGGACGCAAGCGTCGTGGATCAGGAGACGCTAGCTTTGCCGTTGGTT
TCCCGGTCGTAGCTT-------------CGTTTCTGGGCCTTGCTTGCGTGGACCTGTAGTTGTCTTGCGGATGCAAGCC
TACGGCTACGGTACGTCCC-----TCTCATGGAGGTGGACATCACCGCAAGGAAACGCAAGCGGGCGCAGCCAGTGCGCG
CTGAGTTTTAGTTTTTGGAGACTCGATCGTCCGGA-------ACACGTACGCTAGCCTGCATGCGTCTCACCGTCGTTTC
GGCAACCATGCAAGGCATGCCGTGCGCTGATGGAAACACCGTTTTTTCTTCTTTCA-TTTCATTTCATCTGGTTCGTGCT
AATTATTACTGCTGGT--------GGCATTCAGTCGGCTTACCAGACAGTGACACTGACCACCGAACAGCTGGTGCTCTG
ATACTGCTAGTTTTTAGTCGATTGAAATCCAGTTACTTGGATCTATATGCGTGTCTCTCTCTCTGCACTCTGCACACGCC
ACTAGAGTGCAACGTGCCCGCAACAAAAGAATTGTGTGACACTAGTGCTGCTGCAGCTTCCTGCGCGCTCGGTTTCACTC
---CACCCGGCTCTTCTTAAGCCCGAGCACTAGTTCCTTTTCTTCCCTTAGCTCTTCCTCGCTAGCCAAGTACCCGGCCA
G--CACACTGACTGTGCTCGAGAATCAAGGCATGAAAGCGACGACACCTCGCGGCGGCGGCGTGGAGACTGCCAAGCCCA
AGAAGAGGAAGAAGGCCGGCGCGGGTGGGTTCATCTTTGGCTGCGGCGGCTCCAAGTCGGTGGCCGTCGTCGCAGACAAT
CTCTCCACGATGGCACTGGCCAAGTCGTCGTCGTCGTCGTCGAGCGCCGCAGCAATGGCGAAGCCAGCCCCGGCAGCGAA
ACCGACGGCGCTGGCCTGCCAGGACGCCGAGGGCGCGCCGAGCGTGGACGCGCTCCTGGGCCAGCTCCGCGAGCTGGAGC
GCGGCGTGCGCGCGCTGGGCGTCCGCGCCCGGGAGGAGGACGGCGTGGCGCAGGCGTGCCGGTGCAGCGCGGGGCCGCCG
CGGCACCGGCGGGACGCGTGGGGAGGCGGGCGCGGGCGGCTGGAGGAGGAGAGCGTGGCGGTGGTGACGGAGACGGAGGA
CCCGCTGGGCGAGTTCCGGCGGTCCATGGCGGAGATGGTGGTGGAGAACGGGATCACGGGTGGCGCGGAGCTGCGGGAGC
TGCTGCAGCGGTTCCTGTCGCTCAACTCGGCGCGCCACCACCACCTCATCCTCCGCGCCTTCGCCGACGTATGGGAGGAG
CTCTTCGCCGGCGACCCCACGCAG---ATGCTGAAGCAGAAGCAGAAGCGTCCTGCTGTCTCCCCTGCCGGCCACAGCGC
CCGGGCGAGCAGCTAGCTGCACGTACGCA--------CGCACTGACACGTTAACTACAGTCCGTAAACTCCCCCATGCAC
GCACCCG----CCCTCGGGAGTTGTTGCCGTCCGATCCGATGAAAACATGCAACTCGGCCTCATGTGA------------
----------------------------------TGACCTGAGTCTGAATCAGTTCTCTCCTCCGTTAATCCTGTAAAGA
TCTCATCGTACGTACG-TACATTTCCCGTGAATGTTGCGTGCCATTGTTGCTCTGTTTGCTACTCCCTCCGTTCGAAATT
ACTTGTCTCGGAAATAGATGTATTTAGAACTAAAATACATCTAGATACATTCATTTCTACGACAAGTAATTCCGAACGGA
GGGAGTACTTCTCACGCGTTGCGTGCGTTGCCTCTGGTGG---TCGACC------------AAACACGAATCGACAGGCG
GAAGCAGCGGGAGATGGGCGGCTGATCGCCATGGATCCACGACCATCATGAGGCCGAGTTGCTGGATGCTTGGTGGGAG-
-----------AGGGCGTGGTCTGCTCGTCGCCTCGTCGGGCGGCAGCAAAGGGCACGAGCCCACCAAACATTCTGGTTC
GGTCGCGGGGTCGATGGTGAGATATCGAGTACTTAAACGGGATCGAATTGATTGACTGACTGACTGATTGATTGAT----
GTGACCTGCGTCGGTGCGAGATC----GATCGTGCGCGCCAAGCCTCACCCCGTGACTGAAAATGCCGGCCCGGTTGCTT
GGGCAGGCATCGGATCGCGGCATGTTTGCCGGCGATCGCAAGGAACATATATCCCGTCGATCGCCCCTCTGACGCCCGTG
CTAGTCCGGAAATACTTGTCATCCGTGCTAGTATTTGTTAGTTGTCGTGGTTCGTACCCATGCCTCTGTGTCTGTA--GG
TGCTCGACATAGAAATTCCATGACTTTTCCCGGGTGTCACCTGCCACGGGTGCTTCACAAATACTATAACAAACTATGCA
C---TTCATATGGCTGGGTCAATTAGCATGTGATGCATGCGTCCAACGATTACGCCGAATGATGAGCTGATTGACTGGAA
GCGCGCGGCCGGCTGCGGTGTTAGTTGCAGGATCATGCATGCAT------------------------------------
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>SNPs
-------------------------------------------------------S------------------------
-S----------------------------------------------SS------------------------------
-----------------------------------------------SSSS-----------------------------
---SSSSSSSSSSSSSSS--------------------------------------------------------------
-------SSS------------------SS--------------------------------------------------
-----------------------------------------------------S--------------------------
--------------S------S---S--------S-----------------------------------------S---
----------------------------------------------------------S---------------------
----------------------------------------------S------------------------S--------
S------------------------------------------S----S-----------------S--S--------S-
-----S----------S-------------------------------------------S---------------S---
-----------------S-------------------------S------------------------------------
-------S----------------------------------S---------S---------------------------
SSS------------S-----------------------------------------------------------S--S-
-----------S------------------------------------------------------------S-------
----------------S-----------------------------------------S---------------------
-------------------------------------------------S----------S-S-----------------
---S-S-----------S--------------------------------------------------------------
-------------------------------------------------------------S------------------
----------S------------------------S--------------------------------------------
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----------------------------------------------------------------S---------------
---------------------S---------------S------------------------------------SS----
-----------------------------------S---------------------------------S----------
----------------------------------------------------S-------S-------------------
---------------SSSSSS---------------------------------------S-------------------
---------------S----------------------------------------------------------------
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-----------------------------------S----SSS-------------------------------------
-----------S---------------------------S-----------------------S----------------
--S------S----------------------------------------------------------------------
-------------------------------------------------------S---------------S---S----
----S------------------SSSS--------------------------------------------S--------
-------------------------------------------------------S--------------S---------
-----------------------------------------------------------------SS-----S---SS--
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----------------------S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_721
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-------------------------------------------------------------TGCGTCTCACTGTCGTTTC
A-------------------------------------------------------------------------------
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>reverse_2384
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---------------------------------------------------------------ACATGCTTGGTGGGAGA
GGA-----------------------------------------------------------------------------
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