>input_sequence_63201
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--------------------------------------------GTGTTGCACAGATAGACAAATG--GAGAAAAACAGA
CGGAGAACGAAACAATGGCTGCCGAAGGAAGTCTGAAGCTGCTCGGCTTGACGGTGAGCCCGTTCGTCATCCGTGTACGC
ATGGCGCTGCAGCTGAAAGGCATCGGCTACGAGTACATAGAGCAGGACCTGTTCACCAAGGGCGAGCTCCTCCGCAAGTC
CAACCCGGTGTACATGAAGGTCCCGGTGCTCATCCACGACGGCAAACCCATCTGCGAGTCGCTGGCCATCGTGCAGTACG
TCGACGAGGTCTGGGCGGCCACGGGCCCCTCGATCCTCCCCGCCGACCCCTACGATCGCGCCGCCGCTCGCATCTGGGCC
GCCTACGCCGACAGCAAGGTGCTTGCGTGTGTGCTGTTGCCCCAACTTTTCCTACAGTAGTG-TTTGAGTTTGAGCCGGG
TTTCATGGTC---GTGGTGTCTTGCAGCTCTTGCCGGCCTGGGTAGGCATCATGTGGGCGGCGACGGAGGAGGAGAGAGC
GGAGAAGGTCGAGGACACGCTAGCGGCTATCGGCCAATTGGAGGAGGCGTTCGGCAAGTGCTCGAAGGGAAAGGCCTTCT
TCGCCGGCGATTCCGTCGGGTACCTCGACCTCGTCGTCGGCTCGCAGTTGCTCTGGTTCGAAGCGCTGCAGAAGATGTTC
GGCGTCGTGGTCGTTGAGGTGGGTAGGGCTCCGCTCTTGGCCGCGTGGGTGAAGCAGTTTGGGGAGACTGATACGGCCAA
GGAGGTGGTGCCGGACGTTGACACGGCGGTGGAGTACCTGACGAAGCTTCAGTCTCGTCGGGCTGGTTCCACGGTTGCCC
AGTTGCTGTCGTGACAAAAGTAGAGTGGAATTTGTCGACCCAGCTAGCAAGTACAGCGAATTTTCTCTTTAGGCCAGCTT
TATAGTCATGTCTTGTAAGGATGCAAAGAATGGACTGGTTTCCCTCCTGACACCACGTAGCTACTTCTCCAAAGAGGATA
ACAAATCGTTTGTAAGAAA-------------------------------------------------------------
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>chr1B_1_TraesCS1B01G194100
CAACCCCACCAGCCACGGATCCGGCGTCCAGAGGCCACCGGCGACCAGATCCGGCGAGGAGGAGCGCGCTGAGGGGGAGT
GGAAGCTGCCTTCAGATCCAGGCGCGAACAGGGGGGCCGCGCCCCCGTTGCGACCGGCGCCAGCGCCCACCGTCACTCGC
CGCCCTCGCGACCAAGAAGACGGGGGGCAACACCCGCGACACCGCTCGCCGCAGAAACGGCGCCGCCACACCACCCGAGG
CCGCTGCCTCGCCGGCCTAAGCCCTCCTCGAGGAGCGAAGCAGCCAGATCCTCGCCGCCACCGTCTTGGGCGACCACGCG
GGCTTCGCCGGAGGCATCCTCGGGCGGCGGCGAGGGGGGAGGAGGAGGGGAAGGGAGGGCGGCGGCTAGGGTTTTCGTTG
CCACCCGAGTCGCCCCGAGCGGAGCGACGCGGGGGCCAAAAGGAAGTACTTCCTACTCCCTCCGCCCGGAATAACTTGTT
GCTCAGTCGGATGTAAAGTATTGAAATACGTTTTATACATTTATTTCAGCGACAACTAATTCCAGACGGAACCAGTTACT
ACACTACTACAAATTCAATGGGTTGCAGATTTTTTTTTTTGAATTTTAATGGGTTGCAGATTTAGTCTTGACTCTGGGTC
GTTTGTTTCAGAAATTTCTTGGCACGTATTCTGTCCGTCTGCTTGGTCCTTCATGCACTTTTCACGGCCCGGCTCTCGGC
AAGAGTTTTCCGTGCGCGCGTCTATTCGTCTATATTGAGCACGGTGTCCCAGTAGTAATCTGGAGCTGTGGACAAACCGA
CAGGGCCGGCAACAAGTTGCAGAGCCAATCCATCCACGCGTGCGAGAAGAATCTCGGGGTGGACTGAAATGCCGAACGGA
AATAATAATGCCACTGTCATCTAATGGAAAAAAGGTGGACTAACTACTGTACTTTGACTGCCAACCGCGTCACTGGTGAC
GCACGTGGGTATACAAAC----GTGAAGAATACGGTGTCTGCCAGTGTTGCACAGATAGACAAATG--GAGAAAAACAGA
CGGAGAACGAAACAATGGCTGCCGAAGGAAGTCTGAAGCTGCTCGGCTTGACGGTGAGCCCGTTCGTCATCCGTGTACGC
ATGGCGCTGCAGCTGAAAGGCATCGGCTACGAGTACATAGAGCAGGACCTGTTCACCAAGGGCGAGCTCCTCCGCAAGTC
CAACCCGGTGTACATGAAGGTCCCGGTGCTCATCCACGACGGCAAACCCATCTGCGAGTCGCTGGCCATCGTGCAGTACG
TCGACGAGGTCTGGGCGGCCACGGGCCCCTCGATCCTCCCCGCCGACCCCTACGATCGCGCCGCCGCTCGCATCTGGGCC
GCCTACGCCGACAGCAAGGTGCTTGCGTGTGTGCTGTTGCCCCAACTTTTCCTACAGTAGTG-TTTGAGTTTGAGCCGGG
TTTCATGGTC---GTGGTGTCTTGCAGCTCTTGCCGGCCTGGGTAGGCATCATGTGGGCGGCGACGGAGGAGGAGAGAGC
GGAGAAGGTCGAGGACACGCTAGCGGCTATCGGCCAATTGGAGGAGGCGTTCGGCAAGTGCTCGAAGGGAAAGGCCTTCT
TCGCCGGCGATTCCGTCGGGTACCTCGACCTCGTCGTCGGCTCGCAGTTGCTCTGGTTCGAAGCGCTGCAGAAGATGTTC
GGCGTCGTGGTCGTTGAGGTGGGTAGGGCTCCGCTCTTGGCCGCGTGGGTGAAGCAGTTTGGGGAGACTGATACGGCCAA
GGAGGTGGTGCCGGACGTTGACACGGCGGTGGAGTACCTGACGAAGCTTCAGTCTCGTCGGGCTGGTTCCACGGTTGCCC
AGTTGCTGTCGTGACAAAAGTAGAGTGGAATTTGTCGACCCAGCTAGCAAGTACAGCGAATTTTCTCTTTAGGCCAGCTT
TATAGTCATGTCTTGTAAGGATGCAAAGAATGGACTGGTTTCCCTCCTGACACCACGTAGCTACTTCTCCAAAGAGGATA
ACAAATCGTTTGTAAGAAATCATAAGTATATTCTTTTTTTTTGCGGGTGAAATCATAAGTATATTCTTTGTCATGGATAT
AATTCTGACAATATTACAGGGTGTGGGTAGATGCAATTGTATCTACCGATCAACGGGGGAGGTAACATGTCAGGCCCACT
ACAACCCCACGCCCTCTCCTCGTCAAGCATACGGTCTCGGCGTGGGCCGACCCGCGAGGCGAAGGAAGCCCAACCCGCGG
AACCAAGGCCCGGAGTGGGTGTGACCGAGCGGAGGCACCAACTACTTAAGAGCATCTCCAGCCGCACCCCCAACAGGCCC
CCCCTCAGGCGACTTTCTCGGCGCTGACGCCAAAAAAACGGCCCAGTCGC-CCCCCAGGACGACGAAAAGCGCCGGTTCG
GCCCTTTTCTCCGCCCGGCGGCCGCAGGCCGAACCCGGCGCGTTGGGGGGCGTTT-GGGGCTCCGGCGCAAGGGAAAAGC
GCGGCTGGCCCATGCCGTCAGGTGAAAAGTCAAGATTTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCGGCGCCGCCCCGCCGCCCTTCACC
GGTAGATAGCCATTCCCCGCCGGAAAAATAGCATAGGTTCGCCGCGACAGCCCCTCCGACACCACCTGGGCGTTTCCGGC
CGCCGTTTCCGGCCGCGGAGGGGCTGTTTAGCGGCGGGTGCACGCCCACCGCGCGCAAGGTGTTCGGCGATTTGCCTGCC
TCGGCGATGGACTCAGATGACGAGGAAGTGCTCGCCGCGCCGCTGGAGGAGGAAGCCGAGA
>chr1D_776
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-------------------------------------------------------TAATCTGGAGTCGTGGACAAACCGA
CAGGGCCGGCAACAAGTTGCA------------CCACGCGTGCGAGAAGAATCTCGAGGTGCACGGAAATGCTGAGCGTA
AATAATATGTCACC-GTCATCTCATGGAAAAAAGGTGGACTAACTACTGTACTTTGACTGCCAACTGCGTCACTGGTGAC
GCACGTAGGTATACAAAC----CTGAACAATACGGTGTCTGTCAGTGTTGCACAGACAGAGCAAGG--GAGAAAAACAGA
CGGAGAACCAAACAATGGCAGCCGAAGGAGGTCTGAAGCTGCTCGGCTTGACGGTGAGCCCGTTCGTCATCCGCGTACGC
ATGGCGCTGCAGATGAAAGGCATCGGCTACGAGTACATGGAGCAGGACCTGTTCACCAAGGGCGAGCTCCTCCGCAAGTC
CAACCCGGTGCACATGAAGGTCCCGGTGCTCATCCGCGACGGCAGACCCATCTGCGAGTCGCTGGCCATCGTGCAGTACG
TCGACGAGGCCTGGGCGGCCACGGGCCCCTCGATCCTCCCCGCCGACCCCTACGACCGCGCCGCCGCTCGCTTCTGGGCC
GCCTACGCCGACAGCAAGGTGCTTGCGCGTGTGTTGCCTCAACT--TTTCCCTGCCGTGATG-TTTGAGTTTGAGCCGGG
TCTCATGGTC---GCGGTGTCTTGCAGCTCTTGCCTGCGTGGGTAGGCATCATGTGGGCGGCGACGGAGGAGGAGAGGGC
GGAGAAGGTCGGCGACACGCTCGCGGCTATGGGCCAGTTGGAGGAGGCGTTCGGCAAGTGCTCGAAGGGAAAGGCCTTCT
TCGCCGGCGATTCCGTCGGGTACCTCGATCTCGTCGTCGGCTCGCAGTTGCTCTGGTTCGAGGCGCTGCGGAAGATGTTC
GGCGTCGTGGTCATCGAGGTCGGCAGAGCTCCACTCTTGGCCGCGTGGGTGGAGCGGTTTGGGGAGACTGATACGGCCAA
GGAGGTGGTGCCGGACGTTGACACGGCGGTGGAGTACCTGAAGAAGCTTCAGTCTCATCGGGCTGGTGCCACTGTTGCCC
AGTTGCTGTCGTGACAAAAGTACATTTCGTCCGGT---------TAGCAAGAACAGCGATTTTTCTGTTTAGGCCAGCTC
TATAGTCATGTCTTGCAAGGATGCAAAGAATGAACTGGTTTCCATCCTGACACCACGTAGCTACTTCTCCAAAGAGGACG
ACAAATCGTTTGTAAGAAATCATAAGTGTATTCTTT--------------------------------------------
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>chr1A_789
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--------------------------------------------------------------------TGGACAAACCGA
CAGGGCCGGCAACAAGCTGCAGAGCCAAGCCATCCACGCGTGCGAGAAGAATCTCGAGGTGCACCGAAATGCTGAGCGTA
AACAATATGTCACC-GTCATCTCATGGAAAAAAGGTGGACTAACTAGTGTACTTTGACTGCCAACCGCGTCACTGATGAC
GCACGGAGGTATACAAACAAATGTGAAGAATACGGTGTCTATCAGTGTTGCACTGATAGAGCAGGGGAGAAAAAAAAAGA
CGGCGAACGAAACAATGGCAGCCGAAGGAGGTCTGAAGCTGCTCGGCTTGACGGTGAGCCCGTTCGTGATCCGTGTACGC
ATGGCGCTGCAGATGAAAGGCGTCGGCTACGAGTACGTGGAGCAGGACCTGTTCACCAAGGGCGAGCTCCTCCGCAAGTC
CAACCCGGTGCACATGAAGGTCCCGGTGCTCATCCACGACGGCAGACCCGTCTGCGAGTCGCTGGCCATCGTGCAGTACG
TCGACGAGGCCTGGGCGGCCGCGGGCCCCTCGATCCTCCCCGCCGACCCCTACGACCGCGCCGCCGCTCGCTTCTGGGCC
GCCTACGCCGACAGCAAGGTGCTCGCGCGTGTGTTGTTGCCCCAACTTTTCCTGCCGTGGTGTTTTGAGCTTGAGCCGGG
TTTCATGGCCGTGGTGGTGTCTTGCAGCTCTTGCCGGCGTGGGTAGGCATCATGTGGGCGGAGACGGAGGAGGAGAGGGC
GGAGAAGGTCGGCGACACGCTCGCGGCTATCGGCCAGTTGGAGGAGGCGTTCGGGACGTGCTCGAACGGTAAGGCCTTCT
TCGCCGGCGACTCCGTCGGGTACCTAGATCTCGTCGTCGGCTCGCAGTTGCTCTGGTTCGAGGTGCTGCGGAAGATGTTC
GGCGTCGTGGTCGTTGAGGTCGGCAGGGCTCTGCTCTTGGCCGCGTGGGTGGAGCGGTTTGGGGAGACTGATACGGCCAA
GGAGGTGGTGCCGGACGTTGACACGGCGGTGGAGTACCTCAAGAAGCTTCAGTCTCGCCGGGCTGGTTCCACGGTTGCCC
AGCTGCTGTCGTGACAAAATTACATGTCAGTT---------AGCAAGTATATACAGCGATTTTTCTGTTTAGGCCAGCTC
TATAATCATGTCTTGCAAGGATTCAAAGAATGAACTGGTTTCCCTCCTGACACCACGTAGATACTTCTCCAAAGAGGATG
ACAAATCGTTTGTAAGAAATCATAAGTACAT-------------------------------------------------
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>chr1D_2274
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-------------------------------------------ACATAAGAACATCTCCAGCCGCGCCCCCAACAGACCC
CCCGT-AGGCGACTTTTTCAGCGCCGACGCCAAAAAAACGGCCCAGTCGCGCCCCCAGGACGACGAAAAGTGCCGGTTCG
GCCCTTTTTTCCGCCCGGCGGCCGCAGGCCGAACCCGGCGCGCTGGGGGGCGCTTGGGGGCTCCGGCGCAAGGGAAAAGC
GCGGCTGGCCCACGCCGTCAGGTGAAAAGTCAAGATTTTCTTTCCCGACTCGCCTCCCACCCCCCGCGCTCTTGGCCGCC
ACTAGGTATA----------------------------------------------------------------------
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----------------------------------------------------TCCCGGCGCCGCCCCGCCGCCCTTCACC
GCTAGATAGCCATTCCCCGCCGGAAAAATAGCAGAGGTTCGCCGCGGCAGCCCCTCCGACACCAGCTGGGCGTTTCCGGC
CGCCGTTTCCGGCCGCGGAGGGGCAGTTTAGCGGCGGGTGCACGCCCATCGCGCGCAAGGTGTTCGGCGATTTGCCTGCC
TCGGCGATGGACTCGGATGACGAGGAAGTGCTCGCCGCGCTGCTGGAGGAGGAAGCCGAG-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------SS-------------
----------------------------S---------------------------S----S--S-------S--S--S-
-------SSS-SS-S-------S---------------------------------------------------------
------S----------------------------------S------------------SS--S---------------
-------------------S---------S--------------------------------------------------
------------S-------------------------S-----------------------------------------
----------S---------------------------------S-----------------------------------
---------S---------------------------------------------S---------------S--------
---------------------------S-----S-------------------S-S--S---------------------
--------------------------------------S--------------------------------------S--
-----------SS--------S--------------S-------------------------------------------
----------------------------S--------------------------------S-------S----------
--------------------S--S---------------------------S---S------------------------
-----------------------------------------S--------------------------------------
----------------------S-S-SS-S--S--SSSSSS------------------S------S------------S
---------------S----------------S----------------------------------------------S
------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----S-------------S----------S---
---S-S----------S--S----S---------------------------------------------S---------
--------S---------------------------------S---------S---------------------------
------------S-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
-S-------------------------------S------------S-----------------S---------------
------------------------S-----------------------S-------------------------------
--------------S-------------------------S-------------------S
>forward_688
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----------------------------TTCTGTCCGTCTGCTTGGTC--------------------------------
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>reverse_2180
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-------------------TCGTCAAGCATACGGTCTCG-----------------------------------------
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