>input_sequence_63187
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----------------------------------------ATGTCGAGGGAGCGCAAGAAGGCAGCTGCC---CTACAGG
AGAAGATGCAGATTCTGCGCTCCATCACTCACTCCCACGCGGTAACCCACGCCTCTTTTCGCTGCCCTTGGT-GTGATCT
TATGCTGCCATTA----GCTTGATGCCTGTTTTTAAATTTAAAATCGCTGTGCAGCTGAGCAATCCTTCCATAGTCATGG
ACGCGTCAGAGTACATCAAGGGGCTGAAGCAGAAGATCGCGAGGCTCAATCAGGAGATAGCACGCGAGGAAGACACGCAC
TCGCACAAGCAGAACTCTTTCCCCACGGTATGCGCGCGCACACACCTATCACCGCACTGTGTATGTATACTGTATGGAGG
ACCTGAGTTATCCGGTTCTGAAGCTTAGGTTATGTACTATGAACGGGAGAGCACTGTGGCACATAGTAATACAGTGGGAT
ATGATGTAAGATTAATGATTT--AATCAATTATTGCGTGCGTCTG-ACTGCACTTGTGCAGGTGAGCGTGGAAGCCCTAG
GGCATGGGTTCCTCGTGAACGTGTCCTCCGACAAGAGCTACCCCGGGTTGCTCGTCGCCGTGCTGGAGGCGTTCGAGGAG
CTGGGCCTCACCGTGCTCCAGGCCACGGCGTCTTGCGCCGATACGTTCCGCCTCGAGGCCGTCGGAGGAG---AGGTACG
TACATAT------ACATATCCCTACGCGACAATGCCTCCTCTCAATCATTAACTGAACCCCGATCGAACTGAACTGTAAA
GCAGACCAACATGTTCTATCGACCTCTGCTGCCCATATATAGTCTGAACCATAAACCTACAATTATCTCATCAATAATTC
-----GATGATGTCGTGACTAGCGACACGG--TGCGACCGACTGATGGATGGATCGTAATTATCTGTGCTGATGCTGGGT
TGTTTCTGTATCAATATGATGTTGCAGAACCAGGCGGGGAGTGTGGATGAGGATGTCATCAGGCGGGCGGTGCAGCAGGC
CATCACCAACTGCGGCGCGGAGCAAGGGGATCAGTAG-------------------------------------------
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>chr2D_1_TraesCS2D01G108900
CACTTGGGCTCGGTGACATTGGAATGACTATGCCCTATAACCGAACAAGATAAGCCGGGATGATGGACGAGGAGGATCAG
GTCCAGGAGATCGATGAGAGTCATGCGAAGAGGAAGCCGACGACGGGTAACTACATGATCTCTATGTTTATGATGTGATG
CATTTAAAATCGCTGTGTTTGTGTTGAAATATATGATCAATTTGTTTGAATAGTTTGAGCAACAG---ATTTCAAAGTTA
GTGAAACCAAAATTTATAGGATAGGGGATCTGCTAGCTGCGGAATAGTGCTTTCCCTAAAAACAA---------------
-----ATAGTAAAGTAGGATAGGAAGCTGTTTTGATAATTTTAGTATAGAGGATCG---------GCCCTTAAACAGTAT
TGGATGAAGGCACATGCATGACAAATTAGTTTAGCTAGGGAATGAATTAACTTTCCTCCAAGACATGCCTTGTTGCGCGA
CTTTCATATTGCTGCAGCGACGCCAGTGATTTACAGGGGCGTAGCTGAGGGTGGAAAGGGGGTGTCCCATGCATGGTCGA
CCACCCTGGAATTTTCAGAAATGATATTA-TTTTTAAATCGGTGCTTCTCAAAAAACTGTTGTATACATGCATCCGTATG
CAAGAAACACACAC--AGTGGGCACTTGGTGGGCAGCAACTGACGGTACACTTTACATTTCTCGGCGGCATATATGCATG
GAAAGGAAAGAAGAGCCGGAGGAAGAGCCAAACCGTGTTTTGAACCTACTACCTAGAATCGAATCTCTCCTCGTCATCCC
ATCTTCCATTCAATTCCCTGAACCGCAATAAGGTCACGTGAGCGGCCACCTCCGGCGATCACTATATAAAGACGTGTGCG
CCCGGAGCTTCTTCATCCTCATCCCCTTGAAGCAACTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTC------------
----TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATTTGG--------------------ATTAGCACGTGAAGGAT
TAACTGCAGAGACAATCAGAGAG--------AC-GGCATAATGTCGAGGGAGCGCAAGAAGGCAGCTGCC---CTACAGG
AGAAGATGCAGATTCTGCGCTCCATCACTCACTCCCACGCGGTAACCCACGCCTCTTTTCGCTGCCCTTGGT-GTGATCT
TATGCTGCCATTA----GCTTGATGCCTGTTTTTAAATTTAAAATCGCTGTGCAGCTGAGCAATCCTTCCATAGTCATGG
ACGCGTCAGAGTACATCAAGGGGCTGAAGCAGAAGATCGCGAGGCTCAATCAGGAGATAGCACGCGAGGAAGACACGCAC
TCGCACAAGCAGAACTCTTTCCCCACGGTATGCGCGCGCACACACCTATCACCGCACTGTGTATGTATACTGTATGGAGG
ACCTGAGTTATCCGGTTCTGAAGCTTAGGTTATGTACTATGAACGGGAGAGCACTGTGGCACATAGTAATACAGTGGGAT
ATGATGTAAGATTAATGATTT--AATCAATTATTGCGTGCGTCTG-ACTGCACTTGTGCAGGTGAGCGTGGAAGCCCTAG
GGCATGGGTTCCTCGTGAACGTGTCCTCCGACAAGAGCTACCCCGGGTTGCTCGTCGCCGTGCTGGAGGCGTTCGAGGAG
CTGGGCCTCACCGTGCTCCAGGCCACGGCGTCTTGCGCCGATACGTTCCGCCTCGAGGCCGTCGGAGGAG---AGGTACG
TACATAT------ACATATCCCTACGCGACAATGCCTCCTCTCAATCATTAACTGAACCCCGATCGAACTGAACTGTAAA
GCAGACCAACATGTTCTATCGACCTCTGCTGCCCATATATAGTCTGAACCATAAACCTACAATTATCTCATCAATAATTC
-----GATGATGTCGTGACTAGCGACACGG--TGCGACCGACTGATGGATGGATCGTAATTATCTGTGCTGATGCTGGGT
TGTTTCTGTATCAATATGATGTTGCAGAACCAGGCGGGGAGTGTGGATGAGGATGTCATCAGGCGGGCGGTGCAGCAGGC
CATCACCAACTGCGGCGCGGAGCAAGGGGATCAGTAGCTAGCTGCTT-ACGTG-CCCCCACATATTCTTCTCGATCTGCC
GGCCC----ATTTGCATAGTTTCATGGCTCTTCTCTCGATCTACCGGATGAGCTGCGATGATATATACATCCAGCTCAAT
CTCTAGCAATTCACCTTGTACTATCTGTTGATGAGTGATGATG------GTAATTCTATCGAAATTGCAGGTAGTCCGGC
AAGGTGTTATTTATCA--GTTACACCGTTTGTGTAGAATTTGCATGTGAGATGGCGAGAAGCTAAGAAGGGCCATCCTCC
CTGCTGCACCCCTTTAGGTTTTAGACCAACATCCCCTTGCG-TTTTCAGCTGTTCATTCTGTTCTGTAATATGATGCTAT
CTCT----ATTCACTGATGTAAGACGTTTTGGCAGTTTAAGTTGAACTGCAAAAATGTCTTACAATAGTGGACAGATGGT
GTATTAT--CCTGCTGCTATGCGGCTTAACGAAAATTTGTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCCCCTCAAAGACAT
ATGAGAAACTAAGGAAATATTAGTA---TGAGTTACTCATGTGGCATGTTGCTCATACGACATAGTTC-TTTTTCTCATG
GGCGGTTTTGCCTTATCCACAC
>chr2B_1
CACTTGGGCTTGATGACATTTGAATGACTATGCCCTATAATCAAACGAGATAAGTCGAGATGATGGATCAGGAGGAGGAG
GTTGAGGAGATCGATGAGAGTCAAGCAAAGAGGAAGAGAGTACAT-GTGACTATATGATCTCTATGTTTGTGATATGATG
CCTTTAAATTATCCATGTTTGTGTTGAAATAT--GATCAATTTGTTCAAATAG-----------------TTCAAAGTTT
GTGAAACCAAAATGTATAAGATAGGGGATCTGCTAGCTGCTTTGGTACTTTAGTATAGAGGATCCTCCATACTAAATAAA
GTACCATATTAAAGTAGGATAGAAAGCTGTTTTGGTACTTTTAGTATAGAGGATCGGCTAGAGATGCCCTTAAACAGCAT
TCGATGAAGGCACATGCACTACAAATTAGTTTAGCTAGGGAATGAATTAACTTTCCTCCAAAACATGCCTTGTTGCGCGA
CTATCATATTGCTGCAGCGACGCCAATGATTTACAGGGGCGTAGCTGAGGGTGGAAAGGGTGTCC------CATGGTCGA
CCACCCTGGAATTTTCAGAAATGATATTGTTTTCTAAACCGGTGCATCTCAAA-AACTGTTGTATACATGCATCCGCATG
CAAGAAACACACAC--AGTGGGCACTGGGTGGGCAGCAACTGACGGTACACTTTACATTTCTCGGCGGCATATATGCATG
GAAAGGAAAGAAGAGCCGGAGGAAGAGCCAAACCGAGTTTTGAACCTACTACCTAGAATCGAATCTCTCCTCGTCATCCC
ATCTTCCATTCAATTCCCTGAACCGCAATAAGGTCACGTGAGCGGCCACCTCCGGCGATCACTATATAAAGACGTGTGCG
CCCGGAGCTTCTTCATCCTCATCCTCTTGAAACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCCATTTCAAGCGAGCCTTCATATATAGAATTAGTACGTGGAGGAT
TAACTGCAGAGACAATCAGAGAGAGAGAGAGAGGAGCATAATGTCGAGGGAGCGCAAGAAGGCAGCTGC---TCTACAGG
AGAAGATGCAGATTCTGCGGTCCATCACTCACTCCCACGCGGTAACCAACGCCTCTTTTCGCTGCCCTTGGTGGTGATCT
TATGCTGCCATTAATTAGCTTGATGTCTGTTTTTAAATCTAAAATCGCGGTGCAGCTGAGCAATCCATCCATAGTCATGG
ACGCGTCGGAGTACATCAAGGGGCTGAAGCAGAAGATCGCGAGGCTCAATCAGGAGATCGCACGCGAGGAAGGCACGCAC
TCGCACAAGCAGAACTCTTTCCCCACGGTA----CGCGCACACACCTATCACCGCACTGTGTATGTATACTGTATACAGG
ACCTGAATTATCCAGTTCTGAAGCTTAGGTTATGTACTATGAACGGGAGAGCACTGTGGCACATAGTAATACAGTGGGGT
ATGATGTAAGATTAATGATTT--AATCAATTATTGCGTGCGTCTGCACTGCACTTGTGCAGGTGAGCGTGGAAGCCCTAG
GGCATGGGTTCCTCGTGAACGTGTCTTCCGACAAGAGCTGCCCCGGGTTGCTCGTCGCCGTGCTAGAGGCATTCGAGGAG
CTGGGCCTCACCGTGCTCCAGGCCACGGCGTCTTGCGCCGATACGTTCCGCCTAGAGGCCGTGGGGGGAGGAGAG-----
---GTACGTACATACATACCCCTACGCGACAATGTCTC--CTCAATCATTAACTGATCCCCGATCGAACAGAACTGTAAA
GCAGACCAACCTGTTCTATCGACCTCTGCTGCCCATATATAGTCTGAACCATAAACCTACAATTATCTCATCAATAATTT
GAGTTGATGGTGTCGCGACTAGCAACACCG--CACGACCGACTGATGGACCGATTGTGAATATCTGTGCTGATGCTCGGT
TATTTTTGTATTAATATGATGTTGCAGAACCAGGCGGGGAGTGTGGATGAGGATGTCATCAGGCGGGCGGTGCAGCAGGC
CATCACCAACTGCGGCGCGGAGCAAGGGGATCAGTAGCTAGCTGCTT-ACGTGCCCCCCGCATTTTCTTCTCGATCGACC
CGCCC-----TTTGCATAGTTTCATGGCTCTTCTCTCGATCTACCGGATGAGCTCCGATGATATATACATCCAGCTCAAT
CTCTAGCAATTCAACTTGTACTATCTGTTGATGAGTGATGATGATGATGGTAATTCTATGGAATTTGTAGGTAGTCTGGA
GGTCGAAAGTTATTGTCTGTTACACCGTTTGTGTAGAATTTGCATGTGAGATGGCAGGA------------CCATCCTCC
CTGCTGCACCCCTTTAGGTTTTAGACCAACATATCCTCTGCATTTTCAGCTGTTCATACTACTCTGTAATATGATGCTAT
CTC---------------------CGTTTTGGTAGTTTAAATTGAACTGCAAAAGCGTCTTACAATAGTGGACAGAGGGC
GTACTAT--CCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCATATTGACATGTTGCTCATATGAGA----------------------------------------------
-----AAACAAAGGAAATATCAGTAGTATGAGTTACTCATGTGGCATGTTGCTCATACGATATAGTTCTTTTTTTTCATG
GGCGGTTTTGCCTTATCCACAC
>chr2A_58
GGAGGA----------------------------------------------------------GGAGGAGGAGGAGGAG
GTCGAGGAGATCGATGAGAGTCAAGCAAAGAGGAAGCGAGTACAT-GTAACTACAAGATCTCTATATTTGTGATGTGATG
CATTTAAATTCTCTA-GTTTATGTTGAAATAT--GATCAATTTGTTCGAATGTTTGAGCGATACTTAAATTTCAAAGTTT
GCGAAACTAAAATTTATAGGATAGGG-ATCTGCTAGCCGTGGAATAGAGATTTCCCTAAAAACAA---------------
-----ATAGTAGAGTGGGATAGGAAGTTGTTTTGGTACTTTTAGTATAGATGATCGGCTAGAGATGCCCTTAAACAGTAT
TCGATGAAGGCACATGCATGACAAATTAGTTTAGCTAGGGAATGAATTAACTTTCCTCCAAAACATGCCTTGTTGCGCGA
CTTTCATATTGCTGCAGCGACGCCAATGATTTAC-------------AGGGTGGAAAGGGTGTCC------CATGGTCGA
CCACCCTGGAATTTTCAGAAATGATATTGTTTTTTAAACCGGTGCATCTCAAAAAACTGTTGTATACATGCATCCGCATG
CAAGAAACACACACACAGTGGGCACCGGGTGGGCAGCAACTGACGGTACACTTTACATTTCTCGGCGGCATATATGCATG
GAAAGGAAAGAAGAGCCGGAGGAAGAGCCAAACCGAGTTTTGAACCTACTACCTAGAATCGAATCTCTCCTCGTCATCCC
ATCTTCCATCCAATTCCCTGAACCGCAATAAGGTCACGTGAGCGACCACCTCCGGCGATCACTATATAAAGACGTGTGCG
CCCGGAGCTTCTTCATCCTCATCCCCTTGAAGCAGCTCTCTCTC------------------------------------
----TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATTTGG--------------------ATTAGCACGTGAAGGAT
TAACTGAAGAGACAATCAGAGAG--------AGGGGCATAATGTCAAGGGAGCGCAAGAAGGCAGCAGCTGCTCTACAGG
AGAAGATGCAGATTCTGCGCTCCATCACTCACTCCCACGCGGTAACCCACGCCTCTTTTCGGTGCCCTTGGT-GTGATCT
TATGCTGCCATTA----GCTTGATGTATGTTTTTAAATCTAAAATCGCGGTGCAGCTGAGCAATCCTTCCATAGTCATGG
ACGCGTCGGAGTACATCAAGGGGCTGAAGCAGAAGATCGCGAGGCTCAACCAGGAGATCGCACGCGAGGAAGACGCGCAC
TCGCACAAGCAGAACTCTTTCCCCACGGTA----CGCGCACACACCTATCACCGCACTGTGTATGCATACTGTATGGAGG
ACCTGAATTATCCGGTTCTGAAGCTTAGGTTATGTACTATGAACGGGAGAGCACTGTGGCACATAGTAATACAGTGGGGT
ATGATGTAAGATTAATGATTTATAATCAATTATTGCGTGCGTCTGCACTGCACTTGTGCAGGTGAGCGTGGAAGCCCTAG
GGCATGGGTTCCTCGTGAACGTGTCCTCCGACAAGAGCTGCCCCGGGCTGCTCGTCGCCGTGCTGGAGGCGTTCGAGGAG
CTGGGCCTCACCGTGCTCCAGGCCACGGCGTCCTGCGCCGATACGTTCCGCCTCGAGGCCGTCGGAGGAGGAGAGGTACG
TACGTACGTACAAACATACCCCTACGCGACAATGCCTC--CTCAATCATGAACTGATCCCCGATCGAACTCAACTGTAAA
GCAGACCAACATGTTCTATCCACCTCTGCTGCCCATATATAGTCTGAACCATAAACCTACAATTATCTCATCAATAATTC
-----GATGGTGTCGTGACTAGCGACACGGCGTGCGACCGACTGATGGATGGATCGTAATTATCTGTGCTGATGCTCGGT
TATTTTTGTCTCGATATGGTGATGCAGAACCAGGCGGCGAGTGTGGATGAGGATGTCATCAGGCGGGCGGTGCAGCACGC
CATCACCAACTGCGGCGCGGAGCAAGGGGATCAGTAGCTAGCTGCTTTACGTG-CCCCCACATATTCTTCTCGATCTGCC
GGCCCGCCCATTTGCATAGTTTCATGGCTCTTCTCTCGATCTACCGGATGAGCTGCGATGATATATACATCCAGCTCAAT
CTCTAGCAATTCACCTTGTACTATCTGTTGATGAGTGATGATG------GTAATTCTATCGAAATTGCAGGTAGTCCGGC
AAGGTGTTATTTATCA--GTTACACCGTTTGTGTAGAATTTGCATGTGAGATGGCGAGAAGCTAAGAAGGGCCATCCTCC
CTGCTGCACCCCTTTAGGTTTTAGACCAACATCTCCTCGCG-TTTTCAGCTGTTCATTCTGTTCTGTAATATGATGCTAT
CTCTATTAATTCACTTATGTAAGACGTTTTGGCAGTTTAAATTGAACTGCAAAAATGTCTTACAATAGTGGACAGAGGGT
GTACTATATCCTGCTGTTATGCGGCTTAATGAAAAGTTGTTA--------------------------------------
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>SNPs
----------S-S-------S-------------------S-S---S-------S--S---------S--------SS--
---S-------------------S--S----------SSSSSSSSS-----------------------S----------
--------S--S--S-----------------SS------------S--------SSSSS-SSSS--------------S
-----------------------------------------------S-S------------------------------
----------------------------------S--S------------------------------------------
-S-----------------------------------------------------------S------------------
-------------------------S----------------------------------S--SSSSSSSS---------
----------------------------S---------S------S------------------------------S---
--------------------------S-----------------------------------------------------
-----------------------------------S--------------------------------------------
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----------------------------------S----S----------------------------------------
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--------------------------------S------------------------------------S----------
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-------------------------S------------S---------S-------------------------------
-------S--------------------------------------------------S---------------------
------------------------------SSSS----------------------------------------------
------S-----------------------------------------------------------------------S-
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---------------------------------------S----------------------------------------
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---S--S-----------S-------------------SS----------------S-----------------------
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---------S------------------------------------------------------------------S---
-S---S--------------------------------------------------------------------------
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---------------------------------S---S------------------------------------------
---------------S------------------------S-----------------------------------S---
---S------------S------------S-----S------SS------------------------------------
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--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS----S----------S---------------------------------------S-------------S-----
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>forward_118
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------------------AGTCATGCGAAGAGGAAGCC------------------------------------------
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>reverse_1817
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--------------------------------------------------------ACCCCGATCGAACTGAACTG----
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>forward_1393
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-------------ACTCTTTCCCCACGGTATGC-----------------------------------------------
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>reverse_2434
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---------------------------------CCCTTGCGTTTTCAGCTGTT---------------------------
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