>input_sequence_63153
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-------------ATGACGCCCCCCTTCCGCCCGTCCCCATCCTCCACCGCCCCCGCCCCCCGCGGCTGCGGCGGCGAGC
GCTGCGCCTCCGGCCGCGATGCCTGGCCGCTCCACCACGTCCGCCACAACGACGTCTTCTGCCGCCTCTGCTCCTCCTGC
GTCCTCCTCTACCACCCCGCCTCCTTCTGCTCCGCCTGCCTCCTCCTCCTCCACACGGACGCCGCCGCC---GCCGCCGC
CGCCGCGGCGCAGGACCCCCACTTCGACCCCGCCGTCGCCCCGCCGGGCCCCACCGCCGAGTGCTCCAATTGCGGCCTCT
TCGTCGCCCATGTCGCCTGCATCCCCGACCCCGTCTCCTTCGTCTGCCCGCCGTGCGCCGCCGAGGCGGAGGGCCGGCCC
TTCACCTACGCGCCCGCCGCCCGCCGCGTGATGGACGAGCGCGCCGCGCGGATCCTCCTCGTCGCGGCGCGCCTCGCGCA
CGAGTCCATCGGCCGCGCCGCCGCCGCCGCCCGCGAGGAGGCGGAGCGCCGCGTCCAGGAGGCTGCCGTCGCGCGGAAGC
GGTCGCGGGAAATGCTGGACGCGGCCTTCCGGGCGCTCGAGGAGGAGGCCAGGGCCGCCAAGATCAAGGAGGAGGAGGAG
GCCGCCAGGGAGGCCAAGAACAAGAAGGAGAAGCCCGCTGCGGCCCAGCCGCCCAAGAAGAAGACCCCTAAGAGCAGCGA
GTCGAGCAGGGACAGGGATAAGATGCTCAAGTTCAACGCCATGCAGCAGCCGGCGCTGGCATTTGCTGCGGCAGCCGCTG
CCGCAGCCAGCTCAATGCCACTGTCGACG---CCAT------------TGTCAACCCCAACACCCAGGGAGGACAAGAAG
CCCATGAAACTGGAGGAGCAGCAAGGTGAATAACTACTGGAATACTTCAAATGGACAGGCCAATTGTTCTGTTCAATAAT
CAGTATTATCATTCTTGCAGGTTCAACGGACACAGTAGCAGATGAGGATGTGAAGGGGTTGTTTGGGACCTTGCAATCAT
AA------------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G081800
ATCACCATTGTACCCTCTTGACCAACTCATGGCAAGGCACACTACATGTGCGGTACACAGCATAGCATACTATAGAGCCT
ATGTCTAAAGCATAGGGGACGACCTTCGTCCTTTTTCTATCTTCCGCTGTGGTCAGGTCTTGAGTCCCACTCAATACTCA
CACCTTGTAACACAGCCAAGAACTCCTTCTTTGCTGATCTATTTTGAACTCTTTCAAAATCATGTCAAGGTGTGCTGTCT
TTTGAAAGTATCATCAGGCGTCTTGATCTATCTCTATGGATCTTGATGCCCAATATGTAAGCAGCTTTATCCAGGTCTTC
CTTTGAAAAACTCCTTTCAAACAACCCTTTATGCTTTCCAGAAATTTTACATCATTTCGGATCAACAATATGTCATTCAC
ATATACTTATCAGAAATGTTGTAGCGCTCCCACTCACTTTATTGTAAATACAAGTTTCCAACAAACTTTGTATAAACCCA
AAAACTTTGTATAAACAAACTTTGTATATACTTATCGGGTTGTTGTTTTGGTGCGTTGGTTTTGTGGGGTCTTAGCACGT
CGGCTTTTCAGTTGTATAATACAATAAATTTGGCACAACTCCGATGAAGGAGGGACGACGACGACGAAGCGCCTTCGACT
CGCTCCAGTGATTATAGTTGTCGCTAGGTGGTCTACGGACATCAATATTTTTTTATGTGCTCTTTGCACTGCC-----AT
AGCATGACAAATAGATATAGAAAGTTTCATG---AAAAAAAGTGAGTCGATCTACCG-------AGCCTGGAG-----CC
CGTTCCACTCCCTCTTCCCACTCCACCGGCAATCCAA--------GCCTCCTCCCACCTACTACCTCCTTTGCTCGTGGA
ACCCCGCC------TGAACACGAAATTCCCGTAAGGAAAGAAAAAAGGAGAGAAAAATCTCTCCCCCAGGAGCCGTTCG-
------GCCGAGCCTTTCCTCCCTCAGAAACCCTAATCC----------TCCC--CTCTCCTCCCTTACCCTGTAAAGCC
GCCGCTCGCCGCGATGACGCCCCCCTTCCGCCCGTCCCCATCCTCCACCGCCCCCGCCCCCCGCGGCTGCGGCGGCGAGC
GCTGCGCCTCCGGCCGCGATGCCTGGCCGCTCCACCACGTCCGCCACAACGACGTCTTCTGCCGCCTCTGCTCCTCCTGC
GTCCTCCTCTACCACCCCGCCTCCTTCTGCTCCGCCTGCCTCCTCCTCCTCCACACGGACGCCGCCGCC---GCCGCCGC
CGCCGCGGCGCAGGACCCCCACTTCGACCCCGCCGTCGCCCCGCCGGGCCCCACCGCCGAGTGCTCCAATTGCGGCCTCT
TCGTCGCCCATGTCGCCTGCATCCCCGACCCCGTCTCCTTCGTCTGCCCGCCGTGCGCCGCCGAGGCGGAGGGCCGGCCC
TTCACCTACGCGCCCGCCGCCCGCCGCGTGATGGACGAGCGCGCCGCGCGGATCCTCCTCGTCGCGGCGCGCCTCGCGCA
CGAGTCCATCGGCCGCGCCGCCGCCGCCGCCCGCGAGGAGGCGGAGCGCCGCGTCCAGGAGGCTGCCGTCGCGCGGAAGC
GGTCGCGGGAAATGCTGGACGCGGCCTTCCGGGCGCTCGAGGAGGAGGCCAGGGCCGCCAAGATCAAGGAGGAGGAGGAG
GCCGCCAGGGAGGCCAAGAACAAGAAGGAGAAGCCCGCTGCGGCCCAGCCGCCCAAGAAGAAGACCCCTAAGAGCAGCGA
GTCGAGCAGGGACAGGGATAAGATGCTCAAGTTCAACGCCATGCAGCAGCCGGCGCTGGCATTTGCTGCGGCAGCCGCTG
CCGCAGCCAGCTCAATGCCACTGTCGACG---CCAT------------TGTCAACCCCAACACCCAGGGAGGACAAGAAG
CCCATGAAACTGGAGGAGCAGCAAGGTGAATAACTACTGGAATACTTCAAATGGACAGGCCAATTGTTCTGTTCAATAAT
CAGTATTATCATTCTTGCAGGTTCAACGGACACAGTAGCAGATGAGGATGTGAAGGGGTTGTTTGGGACCTTGCAATCAT
AACGTTGGGGGTATCACAATCGCCCATCTGTTTGATCTGCTTCCATTTGTTTGCTGTTGCTAAGTGAACCG-CAAGGAGG
CTTTGCTTGAATTTAATGAATCCCTATCCCGGAACCACCTCACCGTAAATTCTAGTCCTGTCATGTTAGACGATCCTCTT
ATTTATGTAGCTGCTTCACCTCCGTGTCCTATTCGTTATTATACTCTATTGGATGATAATTTATCGCAATCGGTCTTCAG
ACTTGTAGATCGAGGAAACCAAAGCGAGTCAAAACTTTA-TATTCCATATAACTACACAGCTATTTCTTTTTTGTCATTT
GGCATAATCTTGTTGAATGTGCAAGTTCCTTTGC---AATATTGTGTAAATGCACCAAGTGGTCGTAATAATCTTTATCC
CCATTCAGTACACAATGGAAAATCAAAGAAGTGGTGTGATGGCAGATTGAAAATTACCCAGAGCATAGTACCATTTCCTG
AACATGACTTGGTATAATGGCAGGGTGGATATCTTCCAAAAATGAAGTGTGTAGGTCTTGACACCCTTGCACAACTCATC
CAAATCCTTTTCTTGCACAACACATCCAAGCTCTGTATTTGAGCACTCTTCCACATGTGCTAAATTTTGCTAACTGTTTA
CATGATTCTCCATGCCTCGTGA-------TCGAGCATGTCTATCGTTTGTTGTTTGTGTAGTTCTAATATACTCCTACCT
GATATGCTCATAAATGATGATGTTACTCTGGAAGTCTTGCTTAGGCCAGTTCTTTTGGGGCTTATGGGTCGCTTCTAGAA
TAAAATTTTGGCAGTCATCCATAAGCCCCAAAAGAACTGGCCCTTACTT-GCTTAACTAAACTGTTGGTGAGGCTCAAAT
CGTATTGAGGCCTCACA--------TCCTGGTGCCACCCCTCCGCAGCAGCTTCACCTATGCTGCTTCCTCGCTAAGCTC
ACCATTGGTGTGGCACTGTCCCGTCACCATTGCT-GCCACATGAGGCAAGAGGCATGCCATAGA
>chr1A_686
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---------------------------------------------TATTTATTTATGTGTTCTTTGCACTGCCATAGTAT
AGCATGATAAATAGATATAGAAAGTTTCATGGGAAAAAGAAGCGAGTCGATCTACCG-------AGCTTTCATGCAGCCC
CGTTCCACTCCCTCTTCCCACTCCACCGGCAATCCAACTATCCAAGCCTCTTCCCACCTAC---CTCCTCTGCTCGTGGA
ACCCCGTC------TGAGCACGAAATTCCCGCAAGGAAAGAAAAAAGGAGAGGAAAATCTCTCCCCCAGGAGCCGTTCG-
------GCCGAGCCTTTCCTCCCTCAGAAACCCTAATCCTCCCCTCCCCTCCC--CTCTCCTCCCTTCCCCTCTAAAGCC
GCCGCTCGCAGCGATGACGCCGCCCTTCCGCCCGTCGCCCTCCTCCACCGCCCCCGCCCCGCGCGGCTGCGGCGGCGAGC
GCTGCGCCTCCGGCCGCGACGCCTGGCCGCTCCACCACGTCCGCCACAACGACGTCTTCTGCCGCCTCTGCTCCTCCTGC
GTCCTCCTCTACCACCCCGCCTCCTTCTGCTCCGCCTGCCTCCTCCTCCTCCACACGGACGCCGCCGCCATCGCCGCCGC
CGCCGCCGGGCAGGACCCCCACTTCGACCCCGCCGTCGCCCCGCCGGGCCCCACCGCCGAGTGCTCCAATTGCGGCCTCT
TCGTCGCCCATGTCGCCTGCGTCCCGGACCCCGTCTCCTTCGTCTGCCCGCCGTGCGCCGCGGAGGCCGAGGGCCGGCCC
TTCACCTACGCGCCCGCCGCCCGCCGCGTGATGGACGAGCGCGCCGCGCGGATCCTCCTCGTCGCGGCCCGGCTCGCGCA
CGAGTCCATCGGCCGCGCCGCCGCCGCCGCCCGCGAGGAGGCCGAGCGCCGCGTCCAGGAGGCTGCTGTCGCGCGGAAGC
GCTCGCGGGAAATGCTCGACGCGGCCTTCCGGGCGCTCGAGGAGGAGGCCAGGGCCGCCAAGATCAAGGAGGAGGAGGCG
GCGGCCAGGGAGGCCAAGAACAAGAAGGAGAAGCCCGCCGCGGCCCAGCCGCCCAAGAAGAAGACCCCTAAGAGCAGCGA
GTCGAGCAGGGACAGGGATAAGATGCTCAAGTTCAATGCCATGCAGCAGCCGGCGCTGGCATTTGCTGCGGCAGCGGCTG
CCGCAGCCAGCTCAATGCCGTTGTCAACG---CCATCGTCGACCCCACTGTCAAACCCAACACCCAAGGAGGACAAGAAG
CCCATGAAACTGGAGGAGCAGCAAGGTGAATAACTACCGGAATACTTCAAATGGGCA-GCCAATTGTTCTGTTCAATAAT
CAGTATTATCATTCTTGCAGGTTCAACGGACACATTAGCAGATGACGATGCGAAGGGGTTGTTTGGGACCTTGCAATCAT
AACGTTGGGG-TACCAAAATCGCCCGTCTGTTTGATCTGCTTCCGTTTGTTTGTTGTTGCTAAGTGAACCG-CAAGGAGG
CTTTGCTTGAATTTAATGAATCCCTATCCTGGAACCACCTCACCGTAAATTCTAGTCCTGTCATGTTAGATGATCCTCTT
ATTTATGTAGCTGCTTCACCTCCGTGTCCTATTCCTTATTATACTCTATTGGATGATAATTTATCGCAATCGGTCTTCAG
ACTTGTAGATCGAGGAAACCTAAGCGAGTCAAAACTTTATTATTCCATATAACTACACAGTTCTTTCTTTTTTGTCATTT
GGCATAATCTTGTAAAGTGTGCAAGTTCCTTTGC---AATATTGTGTAAATCCACCAAGTGGTCGT---AATCTTTATCC
CCATTCAGTACACAATGGAAAATCAAAGAAGTGGTGTGATGGCAGATTGAAAATTACCCAGAGCATAGTACCATTTCCTG
AACATGACTTGGTATAATGGCAGGGTGGACATTTGCCAAAAATGAAATGTGCAGGTCTTGATACCCTTGCACAACTCATC
CAAATCCTTTTCTGGCACAACACATGCAAACTCTGTATTTGAGCACTCTTCCACATGTGCTAAATTTTGCGAACTGTTTA
CATGATTTTCCATGCCTCATGAGTCATGATCGAGCATGTCTATTGTTTGTTGTTTGTGTAGTTGTAATATACTCCTACCT
GATATGCTCATAAATGATGATGTTACTCTGGAAGTCTTACTTAGGCCATTTTTTGGGGGGCTTATGGGTGGCTTCTAGAG
TAAAATTTTGGTAGTCATCCATAAGCCCCA-----------CCTTACTT-GCTTAACAAAACTGTTGGTGAGGCTCAAAT
CGTATTGAGGCCCCACA--------TCCTGGTGCCACCCCTCCGCAGCAGCTTCACCTATGCTGCTTCCTCGCTAAGCTC
ACCATTGGTGTGGCACTGCCCCGTCACCATTGCTGGCCACATGAGGCAAGAGGCATGCCATAGA
>chr1B_737
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---------------------AAGTTTCATGATAAAAGAAAGCGAGTCGATCTACCGATACTGAAGCTTTCATGCAGCCC
GTTCCA-----CTCCTCCCACTCCACCGGCAATCCAA--------GCCTCCTCCCACCTAC---CTCCTTTGCTCGTGGT
ACCCCGTCTGATTCTGAACACCAAATTCCCCTAAGGAAAGAAAAAAGGA-AGAAAAATCTCTCACCGAGGAGCCGTTCGG
GGTTCGGCCGAGCCTTTCCTCCCTCAGAAACCCTAATCTTCCCCTCTCCTCCCGTCTCTCCTCCCTTCCCCTGTAAAGCC
GCCGCTCGCAGCGATGACGCCCCCCTTCCGCCCGTCCCCCTCCTCCACCGCCCCCGCCCCCCGCGGCTGCGGCGGCGAGC
GCTGCGCCTCCGGCCGCGAGGCCTGGCCGCTCCACCACGTCCGCCACAACGACGTCTTCTGCCGCCTCTGCTCCTCCTGC
GTCCTCCTCTACCACCCCGCCTCCTTCTGCTCGGCCTGCCTCCTCCTCCTCCACACGGACGCTGC------CGCCGCCGC
CGCCGCCGCGCAGGACCCCCACTTCGACCCCGCCGTCGCCCCGCCGGGCCCCACCGCCGAGTGCTCCAATTGCGGCCTCT
TCGTCGCCCATGTCACCTGCATCCCCGACCCCGTCTCCTTCGTCTGCCCGCCGTGCGCCGCCGAGGCCGAGGGCCGGCCC
TTCACCTACGCGCCCGCCGCCCGCCGCGTGATGGACGAGCGCGCCGCGCGGATCCTCCTCATCGCGGCGCGCCTCGCGCA
CGAGTCCATCGGCCGCGCTGCCGCTGCCGCCCGCGAGGAGGCGGAGCGCCGCGTCCAGGAGGCGGCCGTCGCGCGGAAGC
GCTCGCGGGAAATGCTGGACGCTGCCTTCCGGGCGCTCGAGGAGGAGGCCAGGGCCGCCAAGATCAAGGAGGAGGAGGCG
GCGGCCAGGGAGGCCAAGAACAAGAAGGAGAAGCCCGCCGCGGCCCAGCCGCCCAAGAAGAAGACCCCTAAGAGCAGCGA
GTCGAGCAGGGACAGGGATAAGATGCTCAAGTTCAATGCCATGCAGCAGCCGGCGCTGGCATTTGCTGCGGCAGCCGCCG
CCGCAGCCAGCTCATGCGGCAGCTCAATGCCACCAT------------TGTCAACCCCACCACCCAAGGAGGACAAGAAG
CCGATGAAAC---AGGAGGAGCAAGGTGAATAACTACTGGAATACTTCAAATGGGCA-GCCAATTGTTCTGTTCAATAAT
CTGTA--ATCATTCTTGCAGGTTCAACGGACACAGTAGCAGATGAAGATGTGAAGGGGTTGTTTGGGACCTTGCAATCAT
AACGTTGGGG-TACCACAATCGCCCATCTGTTTGATCTGCCTCCATTTGTTTGTTGTTGCTAAGTGAACCGACAAGGAGG
CTTTGCTTGAATTTAATGAATCCCTACCCCGGAACCTCCTCACCGTAAATTCTAGTCCTGTCATGTTAGATGATCCTCTT
ATTTATGTAGCTGCTTCACCTTCGTGTCCT-TTCGTTATTATACTCTATTGGATGATAATTTATCGCAATCAGTCTTCAG
ACTTGTAGACCGAGGAAACCTAAGCGAGTCGAAACTTTATTATTCCATATA-CTACACAGTTCTTTCTTTTTTGTCATTT
GGCATAATCTTGTTGAATGTGCAAGTTCCTCTGCAATAATATTGTGTAAATGCACCAACTGGTCGT---AATCTTTATCC
CCATTCAGTACACAGTGGAAAATCAAAGAAGTGGTGTGATAGCAGATTGAAAATTACCCAAAGCATAGTACCATTTCCTG
AACATGACTTGGTATAATTGCAGGGTGGATATTTTCCAAAAATGAAATGTGTAGGTCTTGATACCCTTGCACAACTCATC
CA---CCTTTTCTTGCACAACACATGCAAACTCTGTATTTGAGCACCCTTCCACATGTGCTAAATTTTGCTAACTGTTTA
CATGATTCTCCATGCC-------TCATGATCGAGCATGTCTATTGTTTGTTGTTTGTGTAGTTCTAATATAGTCCTACCT
GATATGCTCATAAATGATGATGTTACTCT---------------------------------TATGGGTGGCTTCTGGAA
TAAAATTTTGGCAGTCATCCATAAGCCCCAAAAGAACTGGCCCTTACTTTGCTTAACTAAACTGTTGGTGAGGCTCAAAT
CGTATTGAGGCCCCACAATCATATATCCTGGTGCCACCTTTCCGCAGCAGCTTCACCTATGCTGCTCCCTCGGTAAGCTG
ACCATTGGTGTGGCATTGTCCTGTCACCATTGCT-GCCACATGAGGCAAGAGGCATGCCATAGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--------S--------------------
-------S----------------------------------S------------------------S-SS-S-------
-------------------------------------------------------------SSS----------------
------S-------------------------------------------------------------------------
-------------------------------------------------------------------S------------
---------S-----------------------------S----------------------------------------
-------------------S------------------------------------------------------------
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------S-------------------------------------------------------------------------
-------------------------------------------------------------------S------------
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-S----------------------------------------------------------------------------S-
--S-----------------------------------S-----------------------------------------
------------------------------------S-------------------------------------------
-------------------SS----S----------------------------------------S-------------
------------------------------------------------------S--S----------------------
---------------------------------------------S----------------------------------
----------S--S---------------------------------------S--------------------------
----------------------------------------------------------------------S---------
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--------------------S---------------------------------------S-S-----------------
------------------------------------------------------------------SSS-----------
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--------------------------------S-------------S--------------S------------------
-------------------------S---S--------------------------------------------------
------------------S------------------------S------------------------------------
--------------------------------------S---------S--S--SS-------------S----------
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------------S-------------------------------------------------------------------
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>forward_572
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------------------------------------------------------------------------TAGCACGT
CGGCTTTTCAGT--------------------------------------------------------------------
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>reverse_1861
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--------------------CTGTCGACGCCATTGTCAAC----------------------------------------
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>forward_611
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-------------------------------GGCACAACTCCGATGAAGGA-----------------------------
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>reverse_1907
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------------------------------------------------------------------GGGAGGACAAGAAG
CCCATG--------------------------------------------------------------------------
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>forward_622
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------------------------------------------GATGAAGGAGGGACGACGAC------------------
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>reverse_2622
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-------------------------------------------------------------CACCCTTGCACAACTCATC
C-------------------------------------------------------------------------------
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