>input_sequence_63144
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---ATGCGCACGACGACGCAAGCGATGTCGTCCTTGCTTCCCCGGGCCACCGCCGAATCCACGAGCTTCACCGCCGCCTT
CCGGGCGTCGCGCGTGTCCCTGACCTCGTCCACGGCCTCCTGGTTGGACATAACCTTCCAGAGCCCGTCGCTGGCGACGA
CGACGAACTCGGTGTCGTCCCCGACGTGCTCGATGGCCACGTCCGGGTCGGAGCTGATGTGCTCCTTGAGTTTCCGGTCA
CCGAACGCCCGCGACATCGCCAGCGACGCGTCCACGCGAGGCACGTCCCCTGATCAACTCATTCATATATGCACGCATAA
GCAACCGCATCAGCATGAAAATTTTCATGGTACCATCAACTCCAAATTTTTAAGTCTCACGGTACCATACCATGCATCTC
GGTGACGAAGCCTCCCCTCCTCTCGATGGCGTCGCGCTCCCGGAGCGGCTCGTGGTCCACGGAGAGCTGCCTCGCCCTGC
CGCCCTCGCACACGACGGCGCGGGAGTCCCCCACGTTGGCCACCACCAGGGTCTCCCCGTTGAGGAGGATGACCGTCACC
GCCGTGGACCCGCCGCGGCGTGGCCTTACTATTTCCTCGCCGTCGGCGGTCACCTTCTTCTTCTTGAGCACCTTCCTGTC
GGTGCGGTGGTAGGCGCGCCGTATGGCCCCCATGGTGTCCTCCCAGAAGTCCGGCTCGCCGAGGATGTTGTCGAAGAGGT
GGTTCCGGAGGTAGGTGGCGACGTCGGCGCCCAAGTGGCCGTCGAAGACGCCGAAGAGGCCCACCTCGTTGCCGTCGTCC
AGGCGCCGGAACTCGGCCACGTGGCGGTCCTCCATGCCGTGCGGCATCTTGCCCTCCACCAGGTGGAAGCCGTAGGTCAC
CTTCCGCGCCGACGCCTTGCTCTTGCCTCTCCCCGTGGCGCGCACCGCCTCCTGCTCGGCGCCATGGAGGCCGTCGTCTT
GGTTTCCAACCTAGAGACATACATACG-ACGAGAGCACCATCAATCAGCAAAGTGA------------------------
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>chr2D_1_TraesCS2D01G228800
AAAGAAAAAACACCTTTTTAAAAAAGTTAAGAAAAGAGATCTTTGTACACTACCATCAGAACATATTTTAATAGAAGAAG
CCTACCTGAATGAGGCGTCAAAAATCTTAAGCTACACCCTAGCTCCTTAGAAAAGTTTACATATTTCGATGCAGATTAAA
GGTAGAAATTAGAGGCTACCCTTCAATTAAAAAGTTAGATCATTCTGATCTTTTATTTGACCTAATAAAAGAACATGAAA
TGCAATGTGTTGATTGTAAGTGTACTTTTAAGTAACTTTAAATTCGTGTAATCTTTTAAGGTCTCTGTTTTCCTATGAAA
AATATGAAGAAAGAAAGATTTTTTTTCATATAAAAATCAAAGGACTCCATAAAAATCTAGACTCAATAAAAAATAGGGTC
TGTCTAGGACACATCTAGATTTGACATAGTTTGTCACATCTAAGCTGATGTCTATTCTATTTGTGGTCTATTTTTTTCTA
ATTTTTTTATTTCTTATTGTTGAATTATATATTTGTGGGAAGTTTAGATGTGACATCTAAAAAACATCTAGATGTGAATT
AGACAAATTGTAAAAAGTATCCTTTAACCATAACATGAATCAAAGGACATCATGTTTTCCATTCCTATCCATGGAATTTG
AAATACATGACATTTCAATTTCCTACAAGTT-CCTATTATTATA--ATACTCATACCCACCGAAGCAAAGGATGCCTTAG
GCCCAGCAACAAACAAGATTTGAAACTTCATATGAACTTACG---AATTTAAGAG-GGTTTTTATAAGAGCTGAAAGAAT
TTCACAAAAAGTGCTGTGTAGGCTACTAGAATTTGAACTTCAGCGAGAATTTTACATCAAACAGTCCAGTGCACTTCCTT
TCTGT---AAGAAGTTTGCTAGTACAGCAAACAGTTCAGCTCATATCCCTTCCACAAACTGGCCCTACGCGCTTGACATC
CTA----------------CAACAAATACATGATGGTATAGGAG------------------------------------
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-------------------------------------------------------------TAGCATCGTTGCAGGTCAG
TGGATGCGCACGACGACGCAAGCGATGTCGTCCTTGCTTCCCCGGGCCACCGCCGAATCCACGAGCTTCACCGCCGCCTT
CCGGGCGTCGCGCGTGTCCCTGACCTCGTCCACGGCCTCCTGGTTGGACATAACCTTCCAGAGCCCGTCGCTGGCGACGA
CGACGAACTCGGTGTCGTCCCCGACGTGCTCGATGGCCACGTCCGGGTCGGAGCTGATGTGCTCCTTGAGTTTCCGGTCA
CCGAACGCCCGCGACATCGCCAGCGACGCGTCCACGCGAGGCACGTCCCCTGATCAACTCATTCATATATGCACGCATAA
GCAACCGCATCAGCATGAAAATTTTCATGGTACCATCAACTCCAAATTTTTAAGTCTCACGGTACCATACCATGCATCTC
GGTGACGAAGCCTCCCCTCCTCTCGATGGCGTCGCGCTCCCGGAGCGGCTCGTGGTCCACGGAGAGCTGCCTCGCCCTGC
CGCCCTCGCACACGACGGCGCGGGAGTCCCCCACGTTGGCCACCACCAGGGTCTCCCCGTTGAGGAGGATGACCGTCACC
GCCGTGGACCCGCCGCGGCGTGGCCTTACTATTTCCTCGCCGTCGGCGGTCACCTTCTTCTTCTTGAGCACCTTCCTGTC
GGTGCGGTGGTAGGCGCGCCGTATGGCCCCCATGGTGTCCTCCCAGAAGTCCGGCTCGCCGAGGATGTTGTCGAAGAGGT
GGTTCCGGAGGTAGGTGGCGACGTCGGCGCCCAAGTGGCCGTCGAAGACGCCGAAGAGGCCCACCTCGTTGCCGTCGTCC
AGGCGCCGGAACTCGGCCACGTGGCGGTCCTCCATGCCGTGCGGCATCTTGCCCTCCACCAGGTGGAAGCCGTAGGTCAC
CTTCCGCGCCGACGCCTTGCTCTTGCCTCTCCCCGTGGCGCGCACCGCCTCCTGCTCGGCGCCATGGAGGCCGTCGTCTT
GGTTTCCAACCTAGAGACATACATACG-ACGAGAGCACCATCAATCAGCAAAGTGAAGTGCGCACGCAAATCTTCTCGAC
ATG-CATGTAGATGTAGGCATTTGGCGGAGCCGTTCAAGCAGGGAACCGGCGCCGAGGCAAACCTTCCGTTGCGCCTGTA
CAGAGGCCATCTTTGCTTTGCTGGGCATCGAGTAAGGAGATCGAGTTCATGGGCGGGCTCCATTTTAAACTCGTGTGGCT
AAGCGGCGAGGGGTTTTCGAGTGTCCAGCCAGCCACGGCGCGCGTGACACGCAACGCGGCGGGCCGGTCTCGTGGCGGCA
CCAGCTTGACGCACCTGGCGACCAGCTTGCCGCGGTCCGGCTTGGGAGGTGGC------TACTCGGTTTGTCGGCCCAGC
GGCTTGCCATAATCCCATGTGACCACCTTTGATCGCCCACTAGGTAGGGGTGAAACTGAGACGAGGTAGATATCTAAGAG
CATCTCCACCCGCGTCCCCAACAGGTCCTTTCGAAATGTTTTTTTCGTGCCAGCGCTTAAAAATCGGTTCAGTCGCGTCC
TTAGGAGTCCGTGTTTCGCCGGTTTAGGCCAAAATTGACGCCGACGGACTGATGACCCACAAGTGTAGGGGATTTATCAT
AGTTCTTTTGATAAGTAAGAGTGTCGAACCCAACGAGGAGCAGAAGGAAATGACAAACGGTTTTCAGTAAGGTATTTTCT
GCAAGCACTGAAATTATCGGTAACAGATAGTTTTGTGATAAGGTAATTTGTAACGGGTAACAAGTAATGAAAATAAACAA
GGTGCGGCAAGATGGTCCAATCCTTTTTGTAGCAAATAACAAACTCTTATATAGAGAAAAGCGCTCCCGAGGACACATGG
GAATTATCGTCAAGCTAGTTTTCATCACGTTCATATGATTCGCGTTTGTTAGTTTGATAATTTGATATGTGGGTGGACCG
GTACTTGGGGACTGCCCTTTCTTGGACAAGTATCCCACTTATGATCAACCCCTATTGTAAGCATCCGCAACTATAAGAGA
AGTATTAAGGTAAACCTAACCAT
>chr2B_580
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-------------------TCCTATAACTCTAAGGTGAATCAAAGGACATCACTTTTTTTATTCCTGTC----GAATTTG
AAATAGATGACATTTCAATTTCCTACAAGTTACCTATTCTTATAATATACTCATACCCACCGAAGCAAAGGAGGCCTTAG
GCCCAGCAATAAACAAGTTTTGAAACTTCGTATGAACTTACGGCAAATTTAAGAGTGGTTTCTTTAAGAGCCGAAGGAAT
TTCACAG-AAGTGCCGTGTAGGTTACTGGAATTGGAACTTCAGCAAGAATTTTACATCAAACAGTCCAGTGCACTTCCTT
TCTGCGAGAAGTT---------TACAGCAAACACTTCAGCTCACCTCCCTTGTACAAACTGTTCCTACGCGCCTGACATC
AAAGTCATCAACAGTCTCCCAACAAATACTCCTACATGACGGTTAGAGCATCTTCAACAAAAGCACAAAAAGAGCTCCGC
GCACTAAAAATTTATTTTTTAACACCGGACAGCTCCAGCAGAAGTTGTTGCGCTAAAAGCTTTTGGGCGCGCGTTGAAAA
ACGCATGATAGCTTCTGGGCGCGCGTTGGAAAACGCTATCACGGGCAGCATATTTGAGCGCCGGTTGCGCGCGCTTCACA
ATTTGCACGGTCTGCTTTTTAGACGCGTGTTTTTGAGCGCCTGCTAAAGCAAAGTTAGTCTCGGCGCATTAAAAACGCTA
CAGTGACGCACTATAATGTTCATTGGGCGCGGAGTGTTCTTGCGCCCGTTGGAGATGCTCCTAGCATCGTTGCAGGTCAG
TGGATGCGCACGACGACGCAAGCGAGGTCGTCCTTGCTTCCCCGGTCCACCGCCGAATCCACGAGCTTCACCGCCGCCTT
CCGGGCGTCGCGCGTGTCCCTGACCTCGTCCACGGCCTCCTGGCTGGACATCACCTTCCAGAGCCCGTCGCTGGCGACGA
CGACGAACTCGGTGTCGTCCCCGACGTGCTCGATGGCCACGTCCGGGTCGGAGCTGATGTGCTCCTTGAGTTTCCGGTCA
CCGAACGCCCGCGACATCGCCAGCGACGCGTCCACGCGAGGCACGTCCCCTGATCAATTCATTCATATATGCACGCATAG
GCAACCGCATCAGCAT------TTTCATCAACTCC---------AAATTTTGAGTCTCACGGTACCATACCATGCATCTC
GGTGACGAAGCCTCCCCTGCTCTCGATGGCGTCGCGCTCCCGGAGCGGCTGGTGGTCCACGGAGAGCTGCCTCGCCCTGC
CGCCCTCGCACACGACTGCGCGGGAGTCCCCCACGTTGGCCACCACCAGGGTCTCCCCGTTGAGGAGGATCACCGTCACC
GCCGTGGACCCACCGCGGCGTGGCCTTACTATTTCCTCGCCGTCGGCGGTCACCTTCTTCTTCTTGAGCACCTTCCTGTC
GGTGCGGTGGTAGGCGCGCCGTATCGCCCCCATGGTGTCCTCCCAGAAGTCCGGCTCGCCGAGGATGTTGTCGAAGAGGT
GGTTCCGGAGGTAGGTGGCGACGTCGGCGCCCGAGTGGCCGTCGAAGACGCCGAAGAGGCCCACCTCGTTGCCATCGTCC
AGGCGCCTGAACTCGGCCACGTGGCGGTCCTCCATCCCGTGCGGCATCTTGCCCTCCACCAGGTGGAAGCCGTAGGTCAC
CTTCCGCGCCGACGCCTTGCTCCTGCCTCTCCCCGTGGCGCGCACCGCCTCCTGCTCGGCGCCATGGAGGCCGTCGTCTT
GGTTTCCAACCTAGAGGCATGCATAGG-ACGAGAGCAGCATCAATCAGCAAAGTGAAGTGCGGACGCAAATCTTGTCGAC
ATG-CATGTAGATGTAGACATTTAGCGGAGCCATTCAAGCAGGGAT-CGGCGCCGAGGCAAACCTTCCGTTGCGCCTGTA
CAGAGGCCATCTTTGCTTTGCTGGGCATCGAGTAAGGAAATGGAGTTCATGGGCGGGCTCCATTTTAAACTCGTGTAGCT
AAGCGGCGAGGGGGTTTCGAGTGTCCAGCCAGCCACGGCGCGCACGACACGCAACGCGGCGGGCCGGTCTCGTGGCGGCG
CCAGGTCCACGCACCTGGCGAGCAGCTTGCCGCGGTCTGGCTTGGGGGGCGGCTACTCGTACTCGGTGTGTCGCCCCAGC
GGCTTTCCAGATTCCCATGTGA----------------------------------------------------------
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>chr2A_690
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----------------------------------------------------ATACCCACCAAAGCAAAGGAGGCCTTAG
GCCCAGCAACAAACGAGATTTGAAACTTCGTATGAAGTTACGT---ATTTAAGAG-GTTTTTCTTAAGAGCTGAAGGAAT
TTCACAA-AAGTGCTGTGTAGGCTACTGGAATTTGAACTTCAGCAAGAATTTGACATCAAACAGTCCAGTGCATTTCCTT
TCTGT---AAGTT---------CACAGCAAACACTTCAGCTCACCTCCCTTCTACAAACTGGTTCTACGCACCACAGAAC
AAACACATGATCGTA-----------------------------------------------------------------
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-------------------------------------------------------------TATCATCGTTGCAGGTCAA
TGGATGCGCACGACAACGCAAGCGATGTCGTCCTTGCTACCCCGGTCCACAGCCGCATCCACGAGCTTCACCGCCGCCTT
CCGGGCGTCGCGCGTGCTCCTCACCTCGTCCACCACCTCCTGGTTGGACATCACCTTCCAGAGCCCGTCGCTGGCGACGA
CGACGAACTCCGTATCGTCCCCGACGTGCTCGATGGCCACGTCCGGGTCGGAGCTGATGTGCTCCTTGAGTTTCCGGTCA
CCGAACGCCCGCGACATCGCCAGCGACGCGTCCACGCGAGGCACGTCCCCTGATCAATTCATTCATACATGCACGCATAA
GCAACATCATCACCAT------TTTCATGGTAC----------AAAATTTTGAGTCTCACGGTACCATACCATGCATCTC
GGTAACGAAGCCTCCCCTGCTCTCGATGGCGTCGCGCTCCCGAAGCGGCTCGTGGTCCACGGAGAGCTGCCTCGCCCTGC
CGCTCTCGCACACGACGGCGCGGGAGTCCCCCACGTTTGCCACCACCAGGGTCTCCCCGTTGAGGAGGATGACCGTCACC
GCCGTGGACCCGCCGCGGCGTGGCCTTACTATCTCCTCGCCGTCGGCGGTCACCTTCTTCTTCTTGAGCACCTTCCTGTC
GGTGCGGTGGTAGGCGCGCCGTATCGCCCCCATGGTGTCCTCCCAGAAGTCTGGCTCGCCGAGGATGTTGTCGAAGAGGT
GGTTCCGGAGGTAGGTGGCGACGTCGGCGCCCGAGTGGCCGTCGAAGACGCCGAAGAGGCCCACCTCGTTGCCGTCGTCC
AGGCGCCGGAACTCGGCCACGTGGCGGTCCTCCATGCCGTGCGGCATCTTGCCCTCCACCAGGTGGAAGCCGTAGGTTAC
CTTCCGCGCCGACGCCTTGCTCTTGCCTCTCCCCGTGGCGCGCACCGCCTCCTGCTCGGCGCCATGGAGGCCGTCGTCTT
GGTTTCCAACCTAGAGACATACATAGGGACGAGAGCACCATCAATGAGCA-----AAGTGCGCACGCAAATCTTGTCGAC
ATGGCATGTAGATGTAGGCATTTGGCGGAGCCGTTCAAGCAGGGAT-CAGCGCCAAGGCAAACCTTCCGTTGCACCTGTA
CAGAGGCCATCTTTGCTTTGCAGGGCATCGAGTAAGGAGATCGAGTTCATGGGCGGGCTCCATTTTAAACTCGTGCAGGT
AAGCGGCGAGGGGGTTTCGAGTGTCCAGCCAGCCACGGCGCGCGCGACACGCAACGCGGCGGACCGGTCTCGTGGCGGCG
CCAGGTCGACGCACCTGGCGAGCAGCTTGCCGTGGTCCGGC---------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS----S----SS---SS-----------------SS----SS------S--SSSS-------
-----S--------------------------------S---------------------------------S-------
-----------------------------S---------------------------------S-----------S----
-------S-------------------S----------------S-----------------------------------
-----------SSSSSSSSSSS-----------S---------SS-------S---------S---------S-------
SS---------------------------SSSSSSS-SSS--SS------------------------------------
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---------------------------------------------S----------------------------------
---------------------------------------------------S----------------------------
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---------------------------------------------------------S----------------------
----------------SSSSSS------------SSSSSSSSS---S----S----------------------------
------------------S-------------------------------------------------------------
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------------------------S-------------------------------------------------------
--------------------------------S-----------------------------------------------
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-------------------------S------------------------------------------------S-----
---------------------------------------------SS---------------------------------
----------------------------------------------------------------------------S---
-------------S------------------------------S----------------------------------S
----S-S--------------S------------------------S--S-----------------S-----S------
-----S---S-S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS
>forward_713
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-----------------------------------------------------TACCCACCGAAGCAAAGGAT-------
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>reverse_2986
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-------------------------GAACCCAACGAGGAGCAGAA-----------------------------------
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