>input_sequence_63130
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------ATGGCTGACAAACAGAACAACAAGGGGAAGGAGA
AAATGCGCTGCTCGGAGTCGCTGTCCGACGA------TTCAGATTCAGTACGTCCCTGCAAGAGGCCCCGGCGGCCGGCT
CCAGAGACCACCCCGGAGCAGCAGGTACGATTCTG--TTGAATTCTCGCTTGCAGGATCGATTCTGTTGGTAG-------
---TGCG--CTTTATCTTCTGCGTTGCAATTCTGTGCTAATAGATTCTAGGGCTA-TATTTTTGTGTGATGTTTCTTGAG
ATGATCTGTTGTTCTGGACAAATCTGGCATAA----TTTTTTTTGTCTCGAAGAACTCCAGATCTTATGGATTTCTGATA
GATTTTATCAGTCAACTCCGTGGACTGAA-AAAAGGGCTTGCCGTGAA-TTTCATCCAATCCCTGAATTAGTTAACATTA
TGAGGGAAAACAACTCACAAAACCAACAGACAAAAATCGCGTGTTAGTCTTTGGCTCCAACTTTTGCATGGTAGTCTTTT
TAAGGTTGCAACAAAGAGAA--------------------------------TCTGATCCGATCTGTAAAACCATCTATA
ACACTCGTGAATCTTGCAGAGCGCACAAGGTCCGCTGAAGATCAGGGATCGAAAGGGATGGCAGCATGGTA------CCA
TCATTGACGGAAGCAGAAACTGGCAGTGCAAGTACTGCCCCATGGTCGGGCGCAGCGGCGGGGTCACCAGCCTCAAGCAT
CATGTTGCTGGTGGCAGCACCAGGGTAAGGGGCTGCCCATCTGCCCCCAAAGAAGTCTCCCGTGAGATGAGAC----GTT
TGTTGAACAGCAGGAGGCGGAAACC---AAAGTGGACTGCACGGAAAGG--GACTGTTGTGCGGCCGGCTATGGCCACAA
--CCACTGAGCCCAAGAACTCTGTACCCAGCGATTC---------------------------GACAGAAGGTTCTGATG
AAAACCGTGCATTCCCCTCCCCGGCATCATTCATGACACGTCTTGTGGACATGATGCTTGCTGCCGCAGAGGTGCTGAGC
A---AGGAGGAGGAGCAGGCCAAGGACTCTGAAAAGAAGCCATGA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>chr3B_1_TraesCS3B01G440000
TTTTTTGATGATGGCAATTCTAGTACTTTGACCATAAAAATA-TTTTTTTATTGAACCATGGCAATTTTAAGTGCATGTA
TCATGAC-ATTTTAGTTTATGGTGCATGGCAAATCTAGTTTCTTAATTCTTTGTTTTATAATATGTTAAATTCTACTTTT
AAATGTAAAATAAAATAGTTGAAACATATCATGGCAACTTCAGTGTAAATACCATGGCAATTCATGTGCAATAGACATGG
CAACTTTTAACAAAAAAAAAATTTCGCCAAAATATATCGATATGAGATCTAGTTTTGAAGATCTCGTCGCGAGGGATTTA
ATGGTGAAAACAGATCTTCAATCAGATTTTTCATTTAAGAGATAAAACATTTTAAAAACTAAAAATCCGAAAAGATTCTC
GCATACATGCATGCGATGACGTGACAATCTATTTGCATTAGAGACATGTGGTGCGTATCCTTTCCTGTCACACGTGTGAC
AGTTATTGACGTTCTTTATTTTTTAACGAAAAATACCACTGTAA-GCACTTAGATACGGAGGGAGAGCGTAGAAACACCA
ACGAATGGATACAT--TACATGCACCATGAAAAGATAACTTGTCCACGTCACGGATCCGGGTGCTCTGTAGAA-GTAGCC
GTTGATAATCCCAGGCAGGAAATAAAAGCTTACCACAAGTTAGAGGACTGCTAATCTGTACGTAGAAAGAAACACAGACG
CGCGAACAAATTTAGAAGAAAACACGTCTGGCGCCCGGTGATGAATTCATAGTCAAGAATAGAAAGACAATACTCCTGGG
ACTTTAAAAGGAGATGCTGGGCGCCAAGTTTGTCACCAGGCATTGCCGGATCATCTATCGTCAGCCCTCCTCTCCGACGC
TTTCTGTTCAGGTTGCAAATCTGTCTCCTCTGTATCTTTCGTTGGGTAGTGGTTAGTGGTGGTAGTAGTAACAAGTTCTG
TTGGATTTGATGCAGGATCCTTGTTTCTTGGTCGAAACTTTTGTAGATGGCTGACAAACAGAACAACAAGGGGAAGGAGA
AAATGCGCTGCTCGGAGTCGCTGTCCGACGA------TTCAGATTCAGTACGTCCCTGCAAGAGGCCCCGGCGGCCGGCT
CCAGAGACCACCCCGGAGCAGCAGGTACGATTCTG--TTGAATTCTCGCTTGCAGGATCGATTCTGTTGGTAG-------
---TGCG--CTTTATCTTCTGCGTTGCAATTCTGTGCTAATAGATTCTAGGGCTA-TATTTTTGTGTGATGTTTCTTGAG
ATGATCTGTTGTTCTGGACAAATCTGGCATAA----TTTTTTTTGTCTCGAAGAACTCCAGATCTTATGGATTTCTGATA
GATTTTATCAGTCAACTCCGTGGACTGAA-AAAAGGGCTTGCCGTGAA-TTTCATCCAATCCCTGAATTAGTTAACATTA
TGAGGGAAAACAACTCACAAAACCAACAGACAAAAATCGCGTGTTAGTCTTTGGCTCCAACTTTTGCATGGTAGTCTTTT
TAAGGTTGCAACAAAGAGAA--------------------------------TCTGATCCGATCTGTAAAACCATCTATA
ACACTCGTGAATCTTGCAGAGCGCACAAGGTCCGCTGAAGATCAGGGATCGAAAGGGATGGCAGCATGGTA------CCA
TCATTGACGGAAGCAGAAACTGGCAGTGCAAGTACTGCCCCATGGTCGGGCGCAGCGGCGGGGTCACCAGCCTCAAGCAT
CATGTTGCTGGTGGCAGCACCAGGGTAAGGGGCTGCCCATCTGCCCCCAAAGAAGTCTCCCGTGAGATGAGAC----GTT
TGTTGAACAGCAGGAGGCGGAAACC---AAAGTGGACTGCACGGAAAGG--GACTGTTGTGCGGCCGGCTATGGCCACAA
--CCACTGAGCCCAAGAACTCTGTACCCAGCGATTC---------------------------GACAGAAGGTTCTGATG
AAAACCGTGCATTCCCCTCCCCGGCATCATTCATGACACGTCTTGTGGACATGATGCTTGCTGCCGCAGAGGTGCTGAGC
A---AGGAGGAGGAGCAGGCCAAGGACTCTGAAAAGAAGCCATGACGAAGCAGGAAGATTGGTGGAGGT------GTAAA
AGT--AAT--AATTTGTCACCTTAACCTCTGCGAGTTCAAATCTTATTTTAAG-----TACTTGTTAATGTAACTTTAGG
ATGCCTCATACAGTATTTTCCTCTTGGGAGAATGCTGTCA--GCTTAAGTAAAGTTTGTTTTTTTGCAAATTAGTCTCAA
GAAAAGTTGCA----TTACCATTTAGAACGCCTCATGTTTCAACT------------------------CTATACGATGA
TATGATGCCGAGACGTCCTCGCTGAATGCTAAAAGTTGCACGTCTCCGCATCATTTCTCTCATGATCTCTCCTCTGCCTG
CCTCAATCTACTGGCGCATATCTGATAATGTGAATGTACACGCCACTAGAAGAATAGATTATAGATCTGTAAGTGCGTAC
TTCGGTGACATTGACTTGTAAACAGTACAAGCGTTTTTACATATGTTTTTGTGGTTATTTACTTAGCCGATTCATAAGCG
TGTTATGGGCCATGGACTATATATATGCTACAGAAAGTTAATTACTTATCTAGCCCCAAATCTAGAAGACTGCCATGCCA
TAGTTGGAGGCAGAGTGAGTGGAAAGTTCAACATGAAGCTTTTGGCTATTTGATCTGTATGATTTCAGGCAACTAGTATA
GTTACCCTGTAACTAGTGAATCATGGTAAGACTAATTTTACGATATAGAGTTGGAACGTAAATTTTAGCATAAATCTCGA
AATCTCTATAGTTCTTTCAGAAAATGAAGGAGGTTTACCCGAAACAATTTAGTCCTACTGAAAGTGTTTTAGCTGTTAAA
AGCAAGCAATCATCAGAAGATTGCTTTGTTTAACAAATTATGGAAACCATCAGCTAGTTATTATTACATATCTAATCATA
CCTATGTTATCTCTTTATGCTAAACTATT----------------TTCAATTTTTTTGG-AACCTGTAATGTGTTTTTCT
AATTGGGTGCACATGTTGCATAGAAACCATGGGTGCACAGGAGGATAT-TTCTCAGTTGCCAACTTGT
>chr7B_1
TTTTTTGATGATGACAATTCCAGTACTTTGACCATGAAAATATTTTTTTTATTGAACCATGACAATTTTAAGTGCATGTA
TCATGGCAATTTTAGTTTATGGTGCATGGCAAGTCTAGTTTCTTAATTCTCTGTTTTATAATATGTTAAAATTTACTTTT
AAATATAAAAGAAAATAGTTGAAACATATCATGGCAACTTTAGTGTAAATATCATGGCAACTCATGTGCAATAGACATGG
CAACTTTTAACCCAAAAAAAATTTCGCCGAAATATATTGATATGAGATCTACTTTTGAAGATCTCGTCGCGAGGGATTTA
ATGGTGAAAACG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GATCTTCAATCGGATTTTTCAT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TTA
AGAGATAAAACATTTTAAAAACTGAAAATCCAAAAAGAT----------------------TCTTGCATGCATGCATGC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------GATGATGTGACAA-------------------------------TCTAT-
------TTGCA----TTAGAGACGTGTGGTGC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------GTCTCTTTTTCTGCCACACGTGTGGCAGTTATCGACGTTCATTTTTTATTA---------------------
--------------------------------------------------------------------
>chr3A_496
ATTTTTTAT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------ACGAAAAATACCACTGTAA-GCACTT-GATACGGAGGGAGAGCGTACAAACACCA
AATATTGGATACATTATACATGCACCTTGAAAAGATAACTTGTCCACGTCACGGATCCGGGTGCTCTGTAGAA-GTAGCC
GTTAATAATTCCAGGCAGGAAATTAAAGCTTACCACAAGATACAGGACTGCTAATCTGTACGTAGAAAGAAACACAGGCG
CGCAAACAGATTTAGAAGAAAACACATCTGGCGCCCGGTGCTGAATTCATAGTCAGGAATGGAAAGGCAATACTCCTGGG
ACTTTAAAAGGGGATGCTAGGCGCCAAGTTTGTCACCAGGCATTGCCGGATCATCTATCGCCAGCCCTCCTCTCCTACAC
TTTCTGTTCAGGTTGCAAATTCGTCTTCTAATTATCTTTCGTTGGGTAGTGGATAGTGATCGTAGTAGTGACAGTTTCGG
TTGGATTTGATGCAGGATCCTCGTTTCTTGATCGAAACTTTTGTAGATGGCTGACAAACAGAACAACAAGGGGAAGGAGA
AGATGCGCTGCTCGGAGTCGCTGTCCGACGATTCAGATTCAGATTCAGTACGGCCCTGCAAGAGGCCCCGGCGGGCGGCT
CCAGAGACCACCCCGGAGCAGCAGGTATGATCCTG--TCGAATTCTCGCTTGTAGGACCGATTCTGTTGGTAGAAAAGCT
TTATGCGCTTTTTATCTTCTGCGTTGCAATTCTGTGCTAGTGGATTCTAGGGCTATT-TTTTTCTGTGATGTTTCTTGAG
ATGATTTCTTGTTCTGGGTAATTTTTGCCTTA---TTTTTTTTTGTCTCGAAGAACTCCAGATCTTGCAGATTTCTGATA
GATTTTGTCATTCAACTCTGTGGACTGAATAAAAAGGCTTGCCGTGAATTTCCATCCAATCCCTGAACTAGTTAGCATTA
TGGGGGAAAACAACTCGCAAAACCAATAGACAAAAATCTCGTGT---------GCTCCAGCTCTGGCATGGCAGTCTTTT
TTAGATTGCAGCAGAGAGAA--------------------------------CCTGATCTGATCTGTACAACTCTCT--A
ACACTCCTGAATTTTGCAGAGCGCACAGGGTTCGTTGAAAATCAGGGATCGAAAGGGATGGCAGCATGGTA------CCA
TCATTGACGGAAACAGAAACTGGCAGTGCAAGTACTGCCCCATGGTTGGGCGCAGCGGCGGCGTCACCAGCCTCAAGCAT
CATGTTGCTGGTGGCAGCAGCAGGGTAAGGGCCTGCCCATCTGCTCCTAAACATGTCGCCAACGAGGTGAGAC----GTT
GGCTGGACAGGACGAGGCGGAAACCGCGAAAGTGGACTGCAAGAAAAGG--GACTGCTGTGCAGCCGGCTGTGGCCACGA
--CCACTGACCCCAACAACTCTGTACCCCGCGGTTC---------------------------GACAGA---TAATGAGG
AAGGCAGTGCCTTCCCCTCACCCGCATCTTTCATGACACGTCTCGTGGACATGATGCTTGCTGCCGCAGAGGTGCTGAGC
A---AGG---AGGAGCAGGCGAAGGACTCTGAAAAGAAGCCATGAGGAAGCAGGAAGATTGGTGGAGGT------GTAAA
TTTTTT------TTTGTTACCTTAATCTATGCGAGTTCAAATTTTATTTTAAGTACTATACTTGTTAATGTAACTTGAGG
ATGCTTCATACAGTATTTTCCTCTTGGGAGAATGCTGTCA--G-------------------------------TCTTAA
GAAAACGTTGCATTGTTACCATTTAGAACGCCTCATGTTTCAACTGTCGCCGTTTGATGTGCTATTTTGCTATACGATGA
TATGATGCCGATACGTCGTCGTTGAATGCTAAAAGTTGCACGTCTCCGCATCATTTCTCTCATGATCTCTCCTCTGCCCG
ACTCAATCTACTGGTGCTTATCTGATAATGTGAATGTACACGCCACTATAAGAATAGATTATAGATCTGTAAGTGCGTAC
TTCAGTGACATTGACTTGTAAACAGTACAAGCGTTTTTCATATCGTTTTTGTACTTATTTACTTAGCCGATTCATAAGCA
TGTTATGGACCATGGACT--------------------------------------------------------------
--------------------------------------------GCTATTTGATCTGTATGATTTCAGGCAACTAGTATA
GCTACCCTGTAACTAGTGAATCATGGTAAGACTAATTTTATGATATAGAGTTGGAAGGTAAATTATAGCATAAATCTCGA
AATCTATATAGTTCTTTCAGAAAATGAAGGAGGTTTACCCAGAACAATTTAGTCCTACTGGAAGTGTTTTAGCTGTTAAA
AGCAAGCAATCATCAGAAGATTGTTTCGTTTAACAAATTACGGAAACCATCAGCTAGTTATTATTACCTATCTAAGCATA
CCTATGTTGTCTCTTTATGCTAAACTATT----------------TTCATTTTTTTTGGAAACCTGTAATGTGTTTTTCT
AATTGGGTGCACAGGTTGCATAGAAACCATGGGTGCACAGGAGGATACGTTCTGAGTTGCCAACTTG-
>chr3D_496
ATTTGTTTACG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------AAAATACCACTGTAAAGCACTT-GATACGGAGGGAGAGCGTAGAACCACCA
ACGAATGGATACAT--TACATGCACCTTGAAAAGATAACTTGTCCACGTCACGGATCCGGGTGCTCTGTAGAAAGTAGCC
GTTGATAATTCCAGGCAGGAAATTAAAGCTTACCACAAGTTACAGGACTGCTAATCTGTACGTAGAAAGAAACACAGGCG
CGCGAACAGATTTAGAAGAAAACACATCTGGCGCCCGGTGATGAATTCATAGTCAAGAATAGAAAGGCAATACTCCTGGG
ACTTTAAAAGGAGATGCTAGGCGCCAAGTTTGTCACCAGGCATTGCCGGATCATCTACCGTCAGCCCTCCTCTCCGACGC
TTTCTGTTCAGGTTGCAAATTT-TCTTCTCATTATCTTTCGTTGGGTAGTGGATAGTGGT-GTAGTAGTGACAATTTCGG
TTGGATTTGATGCAGGATCCTCGTTTCTGGGTCGAAACTTTTGTAGATGGCTGACAAACAGAACAACAAGGGGAAGGAGA
AGATGCGCTGCTCGGACTCGCTGTCCGAC------GATTCAGATTCAGTACGGCCCTGCAAGAGGCCCCGGCGGCCGGCT
CCAGAGACCACCCCGGAGCAGCCGGTATGATCCTG--TCGAATTCTCGCTTGTAGGATCGATTCTGTTGGTAGAAAGGCC
GTATGCG--ATTTATCTTCTGCGTTGCAATTCTGTGCTAGCGGATTCTAGGGCTA-T-TTTTTCTGTGATGTTTCTTGAG
ATGGTTTCTTGTTCTGGGTAATTTCTGCCTTAAATTTTTTTTTTGTCTCGAAGAACTCCAGATCTTATGGATTTCTGATA
GATTTTATCAGTCAACTCCGTGGACTGAA-AAAAGGGCTTGCCCTGAATTTTCATCCAATCCCTGAACTAGTTGACATTA
TGGGGCAAAACAACTCACAAAACCAATAGACAAAAATCTCGTGT---------GCTCCAACTCTGGCATGGCAGTCTTTT
TTAGATTGCAGCAGAGAGAACCTGATCTGATCTTTTTTTTTTCCGAATGGAACCTGATCTGATCTGTACAACTATCT--A
ACACTCCTAAATTTGGCAGAGCGCACAAGGTTCCCTGAAAATCAGGGATCGTAAGGGATGGCAGCATGGTA------TCA
TCATCGACGGAAACAGAAACTGGAAGTGCAAGTACTGCCCCATGGTTGGGCGCAGCGGCGGCGTCACCAGCCTCAAGCAT
CATGTTGCTGGTGGCAGCACCAGGGTAAGGGCCTGCCCATCTGCTCCTAAACATGTCTCCAAGGAGGTGAAAC----GTT
GGTTGGACAGTAGAAGGCGGAAACC---AAAGTGGACTGCACGAAAAGG--GACTGTTGTGCAGCCGGCAATGGCCACAA
--CCACTGACCCCAAGAACCCTGTACCCAGCAATTC---------------------------GACACAAGGTTCTGATG
AAAACAGTGCATTCCCCTCCCCAGCATCATTCATGACACCTCTTGTGGACATGATGCTTGCTGCCGCGGAGGTGCTGAGG
GCGGAGG---AGGAGCAGGCCAAGGACTCTGAAAAGAAGCCATGAAGAAGCAGGAAGATTGGTGGAGGT------GTAAA
AA-------AAAAATGTTATCTTAACCTCTGCGAGTTCAAATCTTATTTTAAG-----TACTTGTTAATGTAACTTGAGG
ATGCTTCATACAGTATTTTCCTCTTGGGAGAATGCTGTCA--G-------------------------------TCTTAA
GAAAAGTTGCA----TTACCATTTAGAACGCCTCATGTTTCAACT------------------------CTATACGATGA
TATGATGCCGAGACGTTCTCGTTGAATGCTAAAAGTTGCACGTCTCCGCGTCATTTCTCTCATGATCTCTCCTCTGCCTG
TCTCAATCTACTGGCGCATATCTGATAATGTGAATGTACACGCCGCTATAAGAATGGATTATAGATCTGTAAGTGCGTAC
TTCGGTGACATTGACATTG-----------------------------------------ACTTAGCCGATTCATAAGCA
TGTTATGGGCCATGGACTATATATATGCTACACAAAGTTAATAACTTATCTAGCCCCAAATGTAGAAGACTGCCATGCCA
TAGTTGGAGGCAGAGTGAGTGGAAAGTTCAACATAAAGCTTTTGGCTATTTGGTCTGTATGATTTCAGGCAACTAGTATA
GTTACCCTGTAACTAGTGAATCATGGTAAGACTAATTTTACGATATAGAGTTGGAAGGTAAATTTTAGCATAAATCTCGA
AATCTCTATAGTTCTTTCAGAAAATGAAGGAGGTTTACCCAAAACAATTTAGTCCTACTGGAAGTGTTTTAGCTGTTAAA
AGCA---------------------------AACAAATTATGGAAACCATCAGCTAGTTATTATTACATATCTAATCATA
CCTATGTTGTCTCTTTATGCTAAACTATT----------------TTCAAATTTTTTGGAAACCTGTAATGTGTTTTTCT
AATTGGGTGCACAGGTTGCATAGAAACCATGGGTGCACAGGAGGATATGTTCTCAGTTGCCAACTTGT
>chr3B_1070
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------GATTCAGCACGGCTCTACAAGAGGCCCCGGCGGGCGGCT
CCAGAGACCACCCCGGAGCAGCAGGTATGATCCTCTATTGGATTCTCGCTTGCAGGAT----TCTGTTGGTAGAAAAGCT
GTATGGG--TTTTATCTTCTGCGACGCAATTCTGTGTTAATGGATGCTAGGCA---------------------------
------------------------------AA----TC-TTTCTGTCTCGAAGAACAACAAATCTTACAGATTTCTGCTA
GATTTTATCATTCAAATCTGTGGACTGAA-AAGAAGGCTTACCATGAATTTTCATCCAATCCCTGAACTAGTTAACATTA
CTAGGGAAAACAATTCACAAATCTAATAAACAAAAATCGCACGT---------GCTCCAACTCTGGCATGGTAGTCTTTT
TTAGGTTGCAGCAGAGAGAACCTGATCTGATCT----------------------GATCTGATCTGTATGACTATCT--G
ACACTCCTAAGTTTTACAGAGTGCACATGGTTTCTTCAAAATTAGGGATCGCAAAGGATGGGAGCATGGTA------CCG
TGATTTATGAAAACAGACATTGGAAGTGGAAGTACTGCCCCACGGTTGGGCGTAGCGGTGGTGTCACCAGCCTCAAGCAT
CATATTGCCGGTGGCAGTAGCAGGGTAAGGCCGTGCCTATCTGCTCCCAAAGATGTCTCCAATGAGATGAAACGCTTGTT
TGTTGGGCAGTAGGAGGCGGAAACCGCAAAAATGGACGACACAAAAAGCTATACTGTTGTGCAGCCGGCTATGGCAACAG
AGCCTCTGAGCCCAAGAACTCTATACCCTTGACCACGCATTCGACAGAAGGTTCCATGACGGAGACAGA---TTCTGAGG
AAAACAGTGCATTCCCCTCGTCAGCATCATTCATGACACGCCTTGTGGACATGATGCTTTCTGCTGCAGAGGTGCTGAGG
GCGGAGG---AGGC---GGCGATGACCTCTGCAAACAAGCCATGACGAAGCAGGAAGATTGGTGGAGGT------CTAGT
AGTAAAAAGAAAATTGTTACCTTAACCTCTGGGAGGTCAAATTTTATTTAAAG-----TACTTGTCGATGTAACTTGAGG
ATGCTTCATACAGTATTTTCATCTTGGGAGGATGCTGTCA--G-------------------------------TCTTAA
GAAAAGTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>chr3D_1265
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TTCTAGGCAAATCCGCCTTAA----TC-TTTTTGTCTCGAAGAACTACAGATCTTGCAGATTTCTGCTA
GATTTTATCATTCAAATCTGTGGACTGAA-AAGAAGGCTTACCGTGAATTTTCATCCAATCCCTGAACTAATTAACATTA
TGAGGGAAAACAATTCACAAAACCAATAAACAAAAACCTCACGT---------GCTCCAACTCTGGCATGGTAGTCTTTT
TTAGGTTGCAGCAGAGAGAACCTGATCTGATC---------------------------CGATCTGTACAACTATCT--A
ACACTCCTAAAATTTACAGAGTGCACATGGTTTCTTCAAAATTAGGGATCGAAAAGGATGGGAGCATGG------TACCA
TGATTGACGGAAACAGACATTGGAAGTGTAAGTACTGCCCCATGGTTGGGCGCAGCGGTGGTGTCACCAGCCTCAAGCAT
CATGTTGCTGGTGGCAGTAGCAGGGTAAGGGCCTGCCCATCTGCTCCCAAACATGTCTCCAATGAGATGAAACGTTTGTT
TGTTGGGCAGTAGGAGGCAGAAACCGCGAAAGTGGACTGCACAAAAAGC--TACTGTTGTGCAGCCGGCTATGGCAACAG
--CCTCTGAGCCCAGGAACTCTATACCCTTGACCACACATTCGATAGAAGTTTCCATGACGGAGACAGA---TTCTGAGG
AAAACAGTGCATTCCCCTCCTCAGCATCATTCATGACATGCCTTGTGGACATGATGCTTTCTGCTGCAGAGGTGCTGATG
GCGGAGA---AGGC---GACAATGACCTCTGCAATCAAGCCATGACGAAACAGGAAGATTGGTGGAAGT------CTAGT
AGTAAAAA--AAATTGTTACCTTAACCTCTGGGAGGTCAAATTTTATTTAAAT-----TACTTGTCAATGTAACTTGAGG
ATGCTTCATACAGTATTTTCCTGTTGGGAGGATGCTGTCACAG-------------------------------TCTTAA
GAAAAGTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>chr3A_1319
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GATTTTTGCTA
GATTTTATCATTCAAATCTGTGGACTGAA-AAGAAGGTTTACCGCGAATTTTCATCCAATCCCTGAACTAGTTAACATTA
TGAGTGAAAACAATTCACAAAGCCAATAAACAAAAATCTCACGT---------GCTCCAACTCTGGCATGGTAGTCTTTA
TTAGGTTGCAACAGAGTGAACCTGAGCTGATA---------------------------TGATCTGTACAACTATCT--A
ACACTCCTAAATTTTACAGAGTGCACATGGTTTCTTCAAAATTAGGGATCGAAAAGGATGGGAGCATGGTAGTGGTACCA
TGATTGACGGAAACAGACATTGGAAGTGTAAGTACTGTCCCATGGTTGGGCGCAGCGGTGGTGTCACCAGCCTCAAGCAT
CATGTTGCTGGTGGCAGTAGCAGGGTAAGGGCCCGCCCATCTGCTCCTAAACATGTCTCCAACGAGATGAAAC----ATT
GGTTGGACAGGACGAGGCGGAAACCACGAAAGTGG-----------------ACTGTTGTGCAGCCGGCTACGGCCACGA
--CCATTGACCCCAACAACTCTGTACCCAGCGATTC---------------------------GACAGA---TAATGAGG
AAGGCAGTGCATTCCCCTCACCAGCATCATTCATGACACGCCTTGTGGATATGATGCTTTCTGCTGGAGAGGTGTTGATG
GCGGAGG---AGGTGGT---GATGACCTCTGCAAACAAGCCATGACGAAGCAGGAAGATTGGTGGAGGTCTAGTAGTAAA
AA-------AAAATTGTTACCTTAACCTCTGGGAGGTCAAATTTTATTTAAAG-----TACTTATCAATGTAACTTGAGG
ATGCTTCATACAGTATTTTCCTCTTGGGAGGATGCTTTCA--G-------------------------------TCTTAA
GAAAAGTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>SNPs
-------------S------S--------------S-------------------------S------------------
-----S--------------------------S-----------------S-------------------S-S-------
----S-----S-----------------------------S----------S--------S-------------------
-----------SS---------------S--------S-------------S----------------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS--------------------------S----------------------------
--------------------------S-----------------------------------------------------
---------S-------------S------------------S----------------------------------S--
--------S----------------S----------------------------------------S-------------
------------------S-------------------------------------------------------------
--------------------S-----S---SS--------------------S-------S--------S----S---S-
---------------------S----------------------------------------------------------
-S--------------------------------------------------S---------------------------
---------------------------S---S------------------------------------------------
---------S-------------------------------S---------------S-----S----------------
-----S-S---------S----------S---------------------------------------------------
-------------------------------------------------------------------S------------
--------------------------S-----------------SSSSSSSSS---------S-----------------
-S-----------S--------------------------------------S---------------S---S----SS-
------S-----S------------------S-------S----------------------------------------
------------S---------------------------------S--------------S------------------
-------------------------------S------------S--------S------SS------------------
-----S----S--------------------------------S------------------S-----------------
--------------------------------------------------------------------------------
-----S----------------S---------------------------------------------------------
-------SSS----------------------------------------------------------------------
-------S---------S----------------------------------------------------------S---
----S--------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
S-----------------------------------------------S-------------------------------
--------------------------------------SSSSSS--------SS-------------------------S
--------------------------------S---------S------------------S------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------S-----------------------
----------------------------------------S-------------------S-------------------
-----------------------S--S-----------------------------------------------------
--------S-----------------------------------------------------------------------
-------------S------------------------------------------------------
>forward_425
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CATGCATGCGATGACGTGAC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>reverse_1693
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GCAGAAACTGGCAGTGCAAG------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>forward_1210
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CGATTCTGTT
GGTAGTGCGC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>reverse_2702
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CTAGAAGACTGCCATGCCA
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
