>input_sequence_63088
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ATGGCCTCCTCAAGGTCTCTCAGCAGTCGCATCGGCGCAATGCTGGCCGGCGCGTTGCTCCTGCTGTTGTCTACGGCCTC
CGCCGTGGCTCAGCTGGACGTGGGCTTCTACAGCAAGACGTGCCCGCACGTGGAGGAGATCGTCCGGCAGGAGATGCTCG
GGATCCTCAAGGAGGCGCCCACGCTCGCCGGACCCTTCCTCCGCCTCCACTTCCACGACTGCTTCGTCCGGGGATGCGAC
GCCTCCGTGCTGATCGACTCCACCGACGTCGCCAATAGCCCAGCAGAGAAGGACGCGCCGCCCAACAAGAGCCTCCGCGG
CTTCGGCGCCGTGCAGCGCGTCAAGGACAGGCTCCAGTCCGCCTGCCCTAACACGGTGTCCTGCGCCGACGTGCTCGCCC
TCATGGCCCGCGACGCCGTCGTGCTCGCAGGAGGCCCCACGTGGCCCGTCGCGCTCGGCCGGAGGGACGGCCGCGTGTCC
ATCGCTAGCGAGACGAACCAGCTTCCCCCACCCACCTCCAACTTCACCCGCCTCTCCAAGATGTTCGCCGCCAAGGGCCT
CGACGCCAAGGATATCGTCGTGCTCTCCGGCGGCCACACGCTCGGCACCGCGCGCTGCGTCTCCTTCACGGACCGGCTGT
ACAACTTCTCCGGCGCCAATAACCCCGCCGACGTCGACCCAGCACTGGACGGCGCATACGTGGCCAGGCTGAGGTCCCAG
TGCCGGAGCCTCGCCGACAACACCACGCTCGCGGAGATGGACCCCGGCAGCTTCCTCACCTTCGACGCCGGCTACTACCG
CCTCGTGGCAAAGCGCAGAGGAATCCTACACTCCGACTCCGCGCTCCTGGAACACCCGACCACCAGGGCATACGTCGGGC
GCCAGGCCACCGGCCTCTTCGCCGCCGAGTTCTTCCGCGACTTCGCCGAGTCCATGGTCAAGATGGGCAACATCGGCGTG
CTCACCGGAGAACAGGGCGAGATCAGGAACAAGTGCTACGCCGTCAACAAATAA--------------------------
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>chr2B_1_TraesCS2B01G284900
AAGAAAATCTACATTTCAATTGGTCCCAAAACTGTGCATGCAATTTCCAGAAGTGTTAGTTTGTTCCCTTCGAAGCTACG
GCCCGGCCGACCGGCCGGCTAGCCACGGAGATCAATCTCACCGTCGTCGACCGATCTCCGTGTCGCCATGCGTGCATTCG
TGTGGTTGAGTTTTCACCCTTTGGCAGTGACTGAAACTTGCCAGCTACCAACCATGAAAACCTTACTACAAGCATTGCAG
TTTCTGGGGCATACCTTCCTTATGCTACGGGCAAGCTCGCTGCTACGTAGCTCTCTGGTAGACTCGTTTCTTTTCTGCCA
TGTACTCCTATGAGGGCTCTCCCAATGCAGTAAAAAAACTAACTTGCAGTAAAGTTTAAGATAGACGGACCATGTTAAAA
TTAGTGTAAAAAATGTCGTATTACTTCGTGT-------------------------------------------------
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-----------------------------------CACACGTGTGGCACTTATCATTTAGGTAAAATTAATGGCGTAG--
-------ATGAGTATTACTCTTATCTCTCATGTGAAAAGTTAATATA-GACGGACCATGTTAAAATTACTTAGACTAA--
------TTCCAGTTAGTTACCTCTTACGACAAATGATCCCTCAAATGATTCCTACAAGGGCGCCTTCCCAACACATTCCT
ACAAGAATTGAATAATCGATGGTATATTCATACCAATCACTGATCGCGGACTTCAGTGTGCTTAGCTAGGTACGTAGCAA
GGTCCAACGTGTGACAGGTGAACACACACCGACCAAACACACAAAAGGTTGACGAAACAGTAGACGTCAACGTACTGCTT
AATCATCCGCGGGCGCAGCTGGACCAGCCATACAAAGCTGCATGCCCTACGTACTTACTACCATTACACTGCG-------
-----------CGCTAATTGCGAACTCTTCACTAATCCCAATCCTAATTTGTAGGTAGACACTATATAAAGCGGCGGCCA
TCCCGGAGGCATACAGGCATCCCAAGTAACAATCTCCCCCTCTCCCTCTAGCCATAACTTAGCAAGCAACTCCAGCGACC
ATGGCCTCCTCAAGGTCTCTCAGCAGTCGCATCGGCGCAATGCTGGCCGGCGCGTTGCTCCTGCTGTTGTCTACGGCCTC
CGCCGTGGCTCAGCTGGACGTGGGCTTCTACAGCAAGACGTGCCCGCACGTGGAGGAGATCGTCCGGCAGGAGATGCTCG
GGATCCTCAAGGAGGCGCCCACGCTCGCCGGACCCTTCCTCCGCCTCCACTTCCACGACTGCTTCGTCCGGGGATGCGAC
GCCTCCGTGCTGATCGACTCCACCGACGTCGCCAATAGCCCAGCAGAGAAGGACGCGCCGCCCAACAAGAGCCTCCGCGG
CTTCGGCGCCGTGCAGCGCGTCAAGGACAGGCTCCAGTCCGCCTGCCCTAACACGGTGTCCTGCGCCGACGTGCTCGCCC
TCATGGCCCGCGACGCCGTCGTGCTCGCAGGAGGCCCCACGTGGCCCGTCGCGCTCGGCCGGAGGGACGGCCGCGTGTCC
ATCGCTAGCGAGACGAACCAGCTTCCCCCACCCACCTCCAACTTCACCCGCCTCTCCAAGATGTTCGCCGCCAAGGGCCT
CGACGCCAAGGATATCGTCGTGCTCTCCGGCGGCCACACGCTCGGCACCGCGCGCTGCGTCTCCTTCACGGACCGGCTGT
ACAACTTCTCCGGCGCCAATAACCCCGCCGACGTCGACCCAGCACTGGACGGCGCATACGTGGCCAGGCTGAGGTCCCAG
TGCCGGAGCCTCGCCGACAACACCACGCTCGCGGAGATGGACCCCGGCAGCTTCCTCACCTTCGACGCCGGCTACTACCG
CCTCGTGGCAAAGCGCAGAGGAATCCTACACTCCGACTCCGCGCTCCTGGAACACCCGACCACCAGGGCATACGTCGGGC
GCCAGGCCACCGGCCTCTTCGCCGCCGAGTTCTTCCGCGACTTCGCCGAGTCCATGGTCAAGATGGGCAACATCGGCGTG
CTCACCGGAGAACAGGGCGAGATCAGGAACAAGTGCTACGCCGTCAACAAATAATCATCGATTCAACCATCGGGGTAGTG
CAAAGTGCA-----------------------------------------TGCATGGTTAACTCGGTACTATGATTGCTT
GCTTGCTTGATTGCATTGGTTCATACA----TATAATCGTGGTTAATTAACTTGACCTGTCATATATTTACGCGCACTTA
TTTCTTTTATCGGTGTATTCACTGGTGGCTA---TGTTTGTAACTGATATTGATTGTAGAGTGCCGCTTAATTTCTTGTT
TTTATTTCCATTTTAAGGGGGTTTTTCAGTTCATCATGTATTGGCATCATGTAACGGTAACGATGCAACGAAATTAATAA
ACATTTTCTCGTATGAGATCTTCTCTTATTTATCATAGATAGATGAATCCTTCGCAGGAACTTGTAATTCCTTAGAAATA
TTCTTTTTTTCTCCCAACAATCGC------------TGGACTTGGGCTGCATCTTGAGTGTTCCACTCTTGGTCCCACTC
CCCTCTTCGTTGGTATATTATCGCCGGTATCAACACGGGTTA---TGAACGACCATTTGTAAACTTTAGTTTTTTTCTTC
A-TTTGTGCTTTCTAAAACAAGCCGTTATGTTTCAATCTTTGCCGCCAAGTCCTCATAACCCAGATATCCTTTACTTAGA
AATGGGATTTTATCACAGAAACGGCAACACCTATACCAAAGATCGATACCAAGTAAGTTGTTCCCACTAAAACGACGAGT
AAACATTGTTTCTTCACGTGAAAGACAGGTGCTCCTATAGATGTGAAAAGAAAATTAGCATACAACACTTTCGAAGATCC
AGTTGACTGAGGACATGTTTTATTTCTTCCAGTGGAAGAAAGAGGGCCCTTTGGCTAGTGTTCCTCGGGCTTCCCGTTGG
TCCACCTCGTCTTCTGTGGTCTTAGGCCATGAAGGCGTGGAGGATCCTGGCCCTTGCCGGTGGGGGGCTTTGTTTTTCTT
GCTTTTTGAGTTTTGTTAGGGTTTGCGTCTTGCTCACAGAGCCGAGGCGGCGACTGCTCTCTGAAGATGGAATAAAGT
>chr2D_1
AAGAAAATCTACATTTCAGTTGGCCCCAAAACTCTCCATATAATTTCCATAAGTGTTAGTTTGTTCCCTTCGAAGCTACG
GCCCGGCCGACCGGCCGGC-AGCCACGGAGATCAATCTCATCGTAGTCGACTGATCTCCGTGTCGCCATGCGTGCATTCG
TGTGGTTGAGTTTTCACCCTTTGGCAGTGACTGAAACTTGCCAGCTACCAACCATGAAAACCTTACTACAAGCATTGCAG
TTTCTGGGGCATACCTTCCTTATGCTACGGGCAAGCTCGCTGCTACGTAGCTCTCTGGTAGACTCGTTTCTTTTCTGCCA
TGTATTTATTCTCGTCTG---------------------------------------------------------TAAAA
TGTGTGAAGAAAATACTAGAAGATACGTGATGCTCCTTCCTACTGTAATGTTCGTGAATTGTGAACTTCTATTATCAAGT
TTGGATTTCACACTTACTAAATCCAAATTTGATAATAAAAGTTCACAAAATTCACGAACATTACAAGTTTAATGTTTACA
AATCAAATTATTCAAATTCAAACATACGGATCTAAATTTTATTTTTATTATTTCTGGTGTTCGTTGTACCGCCATGATAA
AGATGAATAGATTGAAAGTTTTCTCGCAAAAAAAACATATGAAAGGGTCCAAATGAAGTAATCCTTCATCAGCTTGACAT
GACCGATCTATCTCGATTGATCTACAAAGGACCGAACTGTGATCCTGGTCTCGGTTGCTGAAAGTCCTGGTAACAATCAT
GACAATAGCCATTTCGAAATCATCATCGTCTTCTTCCGAAAGTCATCTTTTGATCCCGAGCTCATATGCTCCCGCATGAA
CAGTAAAATCGAAAAAATATCAAAAAAAATTCAAAAAATTCCAATTTTTTTTGAGAGAAACATTGACAAAAGTTCCAAGT
GCCTGCAAAAATTCATCATGAAATCACATTCCTATAAGGCGTGGCAAAAAAAACAAATTTAGTGCTTCAAAATGCTTTTG
AAAGTAGCTTTTTCAGAGTACTGTTTTTGTTTTTTTGCCATGCCTTCTAAGAATGTGATTTCACGACGAATTTCTGCAGG
CACTTAGAACTTTTGTCAATGTTTCTCCCAAAAAAATTAGAATTTTTTGAATTTTTTTCGATATTTTTTTGATTTTACTG
TTCATGCGGGAGCATATGAGCTCGGGATCAATTCCTCCGCGTCCGTCTTCTTCCTCCTAGTCCGACAAAGATTCGTCGAA
GAACCTCTCCCTCAACCTCTTCATCTACACTATGCATAATATTCTAGTTCAAATTTAGTTGCAAACTGGCCTCTAGTTTT
CCTCACCTAACCCTAGATGGCTAGGCAAAACTATCCCCTCCAGACTTCACTGGCGAGCCCGTGGATTCACCTCCTCTCTG
TCAGCTGCTCGGGCAGCTGGTGGCAGGGAAGAGAAGCCCAGTGCCTCTACTCCGGTTAGTAGTTTAGGGTCGATTTCGGT
GACGGCAACGACCGATGATCAAATCGAAGTAGGGCAGGAGGAGCGGCGGAGGCTGCGGGATGTCAGCGATGGAAGCTACG
GATGGGCGCCAGAGGCATTGCCGGTGTGGATACAGGATACGTTCCAAGCGAGGGAAAGGGGAGATGCTCTCTCTCTCTCT
CTCTCTTTTCCGTGGGCAAGAGATGCTCTTAACTAGCTTGTTTTTACACAACACTAAAGTTTAGCTAGCTACTATCTTGT
GTTGCACTCTGCAATCGTAGTATCGATTTAACTAGCGGGTGGATTACAAATTGGTTGGAGGTAAGAGTTACTCAACCCAC
TACCTAATAAAATTAGGACCTTGATAAGTGCCGCGTGTGTGGCACGAAGCAATTCCGCCCTGGCGTTTTTTGATGGCAAC
TTTAGTGTTGAAGTATGACAACTTACTGTTTGGATGGCAAGTTTCAGTTCTTTTGGGATTTTTTTTTTGAATGGCAACTT
TAATTAAAAAATGTTAGGGCAGTGTTACTTCGTACCACACGTATGGCATTTATCATTTGGGTAAAATTAACGGCGTTGAT
CTATTATATGAGTATTACTCTTACCTCTTATGTGAAAAGTTAAGATAAGAGGGACCAGATTAAAATTACTTGCACTAAAG
TAATAATTCCAGTTAGTTACCTCTTACCACAAATGATCCCTCAAATGATTCGC-----GGCGCCTTCCCAACACATTCCT
ACAAGAATTGAATAATCGATGGTATGTTCATACCAATCACTGATCGGC-ACTTCAGTGTGCTTAGCTAGGTACGTAGCAA
GGTCCAACGTGTGACAGGTGAACACACACCGACCAAAGACACAAAAGGTTGATGAAACAGTAGACGTCAACGTACTGCTT
AATCATCCCCGGGCACAACTGAACCAGCCATACAAAGCTGCATGCCCTACGTACTTACTACCATTACACTGCACGTCAAC
CACTAAGAATACGCTAATTGTGGACTCTTCACTAATCCCAATCCTAATTTGTACGTGGACACTATATAAACCGGCTGCCA
ACCCGGAGGCACACAGGCA----AAGTGACAACCTCCCCCTCCCCCTCTAGC---AACTTGCCAAGCCACTCCGGCAACC
ATGGCCTCCTCAAGGTCTCTCAGCAGTCGCAGCGGCGCAATGCTGGCCGGCGCGCTGCTCCTGCTGTTGTCTACGGCCTC
CGCCGTGGCTCAGCTGGGCGTGGGCTTCTACAGCAAGACGTGCCCGCACGTGGAGGAGATCGTCAGGCAGGAGATGCTCG
GGATCCTCAAGGAGGCGCCCACGCTCGCCGGACCCTTCCTCCGCCTCCACTTCCACGACTGCTTCGTCCGGGGATGCGAC
GCTTCCGTGCTGATCGACTCCACCGACGCCGCCAGTAACCCGGCAGAGAAGGACGCGCCGCCCAACAAGAGCCTCCGCGG
CTTCGGCGCCGTGCAGCGCGTCAAGGACAGGCTCCAGTCCGCATGTCCTAACACTGTGTCCTGCGCCGACGTGCTCGCCC
TCATGGCCCGCGACGCCGTCGTACTCGCAGGAGGCCCCACGTGGCCCGTCGCGCTCGGACGGAGGGACGGCCGCGTGTCC
ATCGCTAACGAGACAAACCAGCTTCCCCCACCCACCTCCAACTTCACCCGCCTCTCCAAGATGTTCGGTGCCAAGGGCCT
CGACGCCAAGGACATAGTCGTGCTCTCCGGCGGCCACACGCTCGGCACCGCGCGCTGCGTGTCCTTCACGGACCGGCTGT
ACAACTTCACCGGCGCCAACAACCCCGCCGACGTCGACCCAGCACTGGACGCCGCATACGTGGCCAGGCTGAGGTCCCAG
TGCCGGAGCCTCGCCGACAACACCACGCTCGCGGAGATGGACCCCGGCAGCTTCCTCACCTTCGACGCCGGCTACTACCG
CCTCGTGGCAAAGCGCAGAGGAATCCTACACTCCGACTCCGCGCTCCTAGAACACCCGACCACCAGGGCATACGTCGAGC
GCCAGGCCACCGGCCTCTTCGCCGCCGAGTTCTTCCGCGACTTTGCCGAGTCCATGGTCAAGATGGGCAACGTCGGCGTG
CTCACCGGAGAACAGGGCGAGATCAGGAGCAAGTGCTACGCCGTCAACAAATAATCATCGATTCAACCATCGGGTGGACC
ATTCAGCATGGATGGTGAGCAATCTAAAAAAAACCTTGGATGCTGCAAAGTGCATGGTTAACTCGCTACTTTGATTGCTT
GCTTG----ATTGCATTCGTTCGTACATACATATAATCGTGCTTAATTAACTTGACCCGTGATATATTTACACGCATATA
TTTCTTTTATCGGTGTATTCACTGGTGGCTAGTATGTTTGTAACTGATATTGATTGAAGA-TGCCGCTTTATTTCTTGTT
TTTATTTCCATTTTAAGGGGGTG-TTCAGTTCATCATGTATTGGCATCATGTAACGATAACGATGTAACGA----AATAA
ACATTTTCTCGTAGTTATCAAGGATGACA-------------------CCTTCGAAGGAACTAGTAATTCCTTAGAAACA
CTTTTTTTCCACTTATAAACGATTGTAGAGTGTCGATGGACTTGGGCTGCATCTTCAGTGTTCCACTCTTGGTCCCTCTC
CCCTCTTCTTCGGTTTATTATTGCCGGTATCAACAGGGGTCATGGTGAACGACCACTTGTAAACTTTAGTTTTGTTTTTC
AATTTGTACTGTCGATAACAAGCCATTAT--TTCTATCTTTGCCGCCAAGTCCTCATCACCCAGATGTCCTTACTT----
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>SNPs
------------------S----S---------S-S---SS--------S------------------------------
-------------------S--------------------S---S------S----------------------------
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----S-SS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-SS---S-S-----SSSSS-SS-SSSSSSS--------------------------------------------------
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------------------------------------------S-----S---------S-----------S-----S---
-----------------------S----S--------------S------S------SS------------SS-------
---------------------------S-----------------------SSSSSSS----------------------
-------------------------S--------------------SSS-------------------------------
-------------------------------------S--------------S---------------------------
--------S-----S--S---S--------------------------------------------------S-------
--------------------S-S------------------------------S--S-------------S----S----
S----------S-------SSSS----S----S---------S---------SSS-----SS-----S-----S--S---
-------------------------------S----------------------S-------------------------
-----------------S----------------------------------------------S---------------
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--S-------------------------S-----S--S---S--------------------------------------
------------------------------------------S--S--------S-------------------------
----------------------S-----------------------------------S---------------------
-------S------S----------------------------------------------------SS-----------
------------S--S--------------------------------------------S-------------------
--------S----------S-------------------------------S----------------------------
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------------------------------------------------S----------------------------S--
-------------------------------------------S---------------------------S--------
----------------------------S---------------------------------------------SSSSSS
SSSSSSSSS--------------------------------------------------------S----S---------
-----SSSS--------S----S------------------S---------------S--S----------S----SS--
--------------------------------------------------------S---S--------S----------
----------------------SS--------------------------------S--------S-----SSSS-----
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-------S---------------S-
S-S-----SSSSSSSS-S-SSSSS-------------------------------S--------------------S---
--------S-S---S------S-------------S----S--------------S-----------------S--S---
-------S--S--S-S--------S----SS---S----------------------S--------S-----SSS-SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2501
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-TTACACTGCGCGCTAATTGC-----------------------------------------------------------
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>reverse_4417
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----------------CGTGAAAGACAGGTGCTCCT--------------------------------------------
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