>input_sequence_63066
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---ATATAAATGCGACCATACTATTCATTAAACAGTGTTTTTTTAATATAGCTTCGATTTTGTTATTTTTGCCTAGATTA
CCACGGGTGTGATTTCTTCATGAAACTTCATATGCGAGCATACCGGTTGACTATGTATATTAGAATAACAAATTCAGATT
TTTTTTGATTTTTTGTAGCATTTTTTCGAATCTACTATTCATAAAGGATGCGCGCACATCCATGTTCACCAAATCCGTGT
CCTAGAAGATAGATAGATATATAAAATAGAGATAGAAGATAGATAGTGATATAAAACAAGACAAA---------------
----------------AGATAGAAGATAGATAGAGATATAAAACAGAGATAGAAGAT-----------------------
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-----------AGAAGATAGATAGAGATATAAAACAGATAGAAGATAG------------------------AGATAGAG
ATAGAGATAGAGATGA-----CATCATTTAAATAAAAAGAAACAAGTTGAGCTAAAATTGAACGCTTGGACAGTGCGCAT
CAATGTCAACACATTTTTTCTATATACATGAACCATGGAGCAAACATTCGATTGTGATCCAGGCAACAGTCTCACTTGAA
AAC-AATACCGCACATCACCTCTTATCAGGCAAACGTAATACCTTACATTACTTTTGATCCTTAGTAATGATGGCCAAAT
ACATGAGGAACGGTGTCCAAGCAGTTATACTACTTTCTTTTGTCATTGTGGTGTGCTTTGCCTGCCTTGGATGTGCGAAC
GGTAATTTATAGTACTAGTTAAAGTTTGTTTCATTCGGAAATCTTTGTTCATGTCAAGAGGATGAGTTTAATCTTTGTTT
TGTGTTAATCAGGTGAAAGCATCAATGACAAGGGGAGCAACGGGATGATCGAAGTAGTCCGCCCCCCTTGTTATAAAGAC
CATCAACAGCCCCCAAGCCTGCAATATTGCTGTCAAACGGACAGGATATGTTGGGTAAACCTTGGGGAATGCTTCACAAA
CTGCCCGTGCAAGATTAATTGCCCACCGCCACCAGCAACACAGTAGTTGTGCCATCTCTCATTCTTTGGGTTA-------
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>chr3D_1_TraesCS3D01G533400
TATACTTGTGTGTTATGAACCACATATAGATGCATATATTGTTGGAAATTCTTTCGCACATACTACACATTTATATGTAT
TTCTACATATT---------------------------------------------------------------------
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-------------------------------------------------TTTTCAGAATTTTATGAAGCATAAAAATAGT
GTTTTTGATTTTCTTAAAGCACTACCTAGAGCCCAAGTTCTGAATAATTTTTCGTGATGCCGAATCATTATTTCAATGGG
AGGGCACTTCAGACATAATTCCCCCAATGATTAGTGTAGTTAGTTTTCTTTTGCTGAATTGGGTGTTTTTTCCTTTCAAC
TTTATTTCCATGAGAGAGA----GGGGTGGAAGGACGGACGGCGTAAGTGTGGCTTTATAGTAGAGATAGAAGATAGATA
GAGATAGAACTAGAAGAAGATGGAAGAAAGATGGATATCCAATTCCATGCCCACGCTCATCTGCACCCGATGAATAGTAA
ATTCAAAAAAAAATACTAAAAAATTTAGACAATTCTGAATTTT-TTAGGTGAAAGATGTTCCAATGCGTGATGTTCGTGC
CAAATTGCATCTTGTTTGGCCATCTGAGGAGCTCATGGCAAAAAAGACAAAATCGGTCAAAACAGTACGTAAACAGTAAA
CTTTCTTATAGTCCCAAAATTTGTCTTTTTTATTGAGAGCTACCGAAATGTTCAAACTCCATGAAATTTGGCACAGACTT
CATGCACATGAGCATCTAGAATCACAAAAAAAAAATTGGATTTTTTTGGATTTTTTTACTATTTTAAACAAATTTACTGT
TCACCTCAGGTGCATATGCACCCGAGAGCCAAAACACCACGTATAGAGATATAAAATAGAGATAGAATATACCGAAAATA
CAAAGGTGAACATGGGTGCGCGTGCACCCATGTGAATAGTAAATTCATAAAACGTACTAGAAAAAATTAAAAATTTCTGA
AATTTCGCGGTATGAGATGATCATTCTACTCACATATGAAGTTTCATGATGTATTGACACCCATGGTATTCTTAGTGAAG
AAAATATAAATGCGACCATACTATTCATTAAACAGTGTTTTTTTAATATAGCTTCGATTTTGTTATTTTTGCCTAGATTA
CCACGGGTGTGATTTCTTCATGAAACTTCATATGCGAGCATACCGGTTGACTATGTATATTAGAATAACAAATTCAGATT
TTTTTTGATTTTTTGTAGCATTTTTTCGAATCTACTATTCATAAAGGATGCGCGCACATCCATGTTCACCAAATCCGTGT
CCTAGAAGATAGATAGATATATAAAATAGAGATAGAAGATAGATAGTGATATAAAACAAGACAAA---------------
----------------AGATAGAAGATAGATAGAGATATAAAACAGAGATAGAAGAT-----------------------
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-----------AGAAGATAGATAGAGATATAAAACAGATAGAAGATAG------------------------AGATAGAG
ATAGAGATAGAGATGA-----CATCATTTAAATAAAAAGAAACAAGTTGAGCTAAAATTGAACGCTTGGACAGTGCGCAT
CAATGTCAACACATTTTTTCTATATACATGAACCATGGAGCAAACATTCGATTGTGATCCAGGCAACAGTCTCACTTGAA
AAC-AATACCGCACATCACCTCTTATCAGGCAAACGTAATACCTTACATTACTTTTGATCCTTAGTAATGATGGCCAAAT
ACATGAGGAACGGTGTCCAAGCAGTTATACTACTTTCTTTTGTCATTGTGGTGTGCTTTGCCTGCCTTGGATGTGCGAAC
GGTAATTTATAGTACTAGTTAAAGTTTGTTTCATTCGGAAATCTTTGTTCATGTCAAGAGGATGAGTTTAATCTTTGTTT
TGTGTTAATCAGGTGAAAGCATCAATGACAAGGGGAGCAACGGGATGATCGAAGTAGTCCGCCCCCCTTGTTATAAAGAC
CATCAACAGCCCCCAAGCCTGCAATATTGCTGTCAAACGGACAGGATATGTTGGGTAAACCTTGGGGAATGCTTCACAAA
CTGCCCGTGCAAGATTAATTGCCCACCGCCACCAGCAACACAGTAGTTGTGCCATCTCTCATTCTTTGGGTTAATAAATC
CCGACCTTATGGGTCCCGAGATAATCATGTGTTGATCAGCTAGCAAATTTGCTAGAAAATTTTCTAGAAATTTGATCCGC
CATTTAAATAAATAATAAAAA-ACTAGCGACTTGCGCTCCCTCATTTCACCTAGATTGGTTACATATCATTTTACATTTT
CCATACTTCTATCTCCATGTTGGCTTAATTGCTCTCCCAAAAGGACCCAAATTGAGCCTTTTGCAGTCATCGATCGCTGT
TCATCTATCATTTGTGAGACGCTGACACGGACGCATCCCTTGGTACAACTGTTTTGTTTTCTAGCCTTTTTCTCATCAAT
CCGTCAGCTAGAGACGGCCCTGCGAATTGATGATGTGAAAGCCTCTCTGAAAAAGGGTTCCCCTCCACTTTGTA-TTACA
AAGCAAACCAACCGAATCATACAGGGATAGGTGTTGGGGCGGAAGCAGCACAGTCACGCCCAAAAGAAACGACAGAGAAA
GAGTAAAAGAAATAAATGCCGACAACGGCGGATCATCAAAAATGAAGAAGCCTCGTGAACGCTGCGCCCACCGGGATCTT
CCACCAGGCTCCAAGACTCCGAAGCGCCGGCACCTATCAACACCTCCAAGAAGGAACGCGACGATGATGACGCTGCTA-C
AAAGGTTTCCCCCGGTACACGACGAGGCGAGAGGAAGAGTAGCCCCCGACGCCCTCCCGGAAGGTCAGGTGGCACCCACT
GGCGCCACCGCGCCGGAGTCCGCCAAGCCGACAGGGGTTTCCCCCGATCCCAACCCGCATCTCGGGCGCTCCGGAGCCTG
CCACGAAACCAACCACCACCCAGCGCCAACGCGGTCTTGAGGCCCCCACGTCGTCTCACCACGGCACCGCGAAGTGAGGA
CAACACGGCGAAGAATCAGAGCCGGGACTAGGACAACAGCACCGTCGGCATGCGGTAGGGCCCCACCTCCACCGTCAGCG
ACGGTAGCCGTCCGGACGCAATAGCAGGAGCACACC
>chr3B_19
------------------ACCACATATAGATGCATATATTGTTGGAAATTCTTTCACACATACTACACATTTATATGTAC
TAGATAATGCCCCGCGCGTTGCTGCGAAAATTTATAGCAAAAACATGTGGTAAATAAAATTAGGATAAAACCTTTGAAAA
TTAAGATGGGCATGAGGCTTAGCTCGGTAAGTAAAACTTAAGTTTAAGGGTAGTGGAATATATGTAGTAGAAATAGTATA
GTAACATGATAGCGCACACATGAGTTCTTGTGATGCAACGCTAACTGGCAGAATGCAAAGATTAATTATATATAGTAAGG
TTCAAAACACTTACATATCTAGGAGGCAGATAATCTTGTTTATGGATTCAACATCCTCCAAACACCAAGCGCAAACAGAG
AATTGAAACCATTGCAAATTGTTCAATTGCTATTAGGCCTTTACCTATTCAGTCGTCCTAAGACAAATATTTGCAGTGAA
CTTTCAACTGTGAGTCTAACAGGTCTTACCTTCAAAGCAGCGACACTTGAGGATAACATGAGAATTGAGAAGGTCACCAC
CAAACCACTTCTTCTTTTTTAGAAAGAAGGGCAATGGCCCAACTTTTATATTAAATGGAAAAGCTAATAGATCATTGTTG
GGATTACCCAGCCACAAGTAGAATATGAAAGACAGGAAAACACATCCACACCTGATCGTGTGGTACCTGGAAATTACAGA
GAGAGCCCATACATGGTGACACGCATCGGGCAAAACCAACACAACAAAAATAGAATATTACACAAAATTAACCAATGGCT
CGCCGCAATTCTGAATCCTTCATCTGCAGACTCCTTGTCAAACCCCTTCTCTCAGCTAGGCAAAGATAGCCGCAGTCGGC
TGTCTCCTCCTATTCAAAAGTTTGGTCATCATCTAGTCCTTTTGTGCTTATCCAGCAGGCGAGGAGACGTGAGGAGTGGG
ATGAGAAACTAAGTAGCTGCTGTGCGGCTGAGAATTAATAAATTATCACTTAAGGTGATCATTCACGTGGGTCACTACTC
AACAGTTAGTATAAGTAGTATAGGAAACTGAAAATTAAAGAAGGTAGGAAAATAGAGAGCAGAAGTACGTACTGTATATA
CTGACCTTAAGAAAATCCTTGAGAAGGTGGCCCGGAAACCACAGCTTCATGTGTACGTAGATTGTATTTTTCTGCCTGCA
GGTGAAAACCAAGTTCTTGCAATAGCAGTTTGTCTGCATTTGGGTAAGAGTGTACAGCCAAAGGGATGCAAATATAATGA
AATAGTTAGAGATTTTTTATTTATATTAATTATAAAAATACCTGCCTCCCTCCTTAAGATCTACATGAGCATTCCCAGAT
TTCCCAACTCTCATATGTGTGATGTGTTATCCAATATACACCAAAATCTGAATTTATGATTTCCAATCAGTGAAAAATCA
AACACTTTCAAATTCAAAAAATCAAACACTTTCTATGTAGTGACCTGCAAGGATACGTACGTGTTGGAGTATAATGTCTG
GCCCTCTTCCTCAGATAGGTCTTTTGGTTGCGTTGGCTAGAGCATGCACTTCTACATGGTATCAGAGCCAAGAGGTCTTG
AGTTCAAGACCTGGCTCACGCAATTAAATTGCAGCGTCTCTTCCATCAGATCGATCTGAAGGATTAAATGGTTATGTGCA
TAAACATACAACCAAGAGGTTCAGGGTTCAAAACCCAGTAAACGCAGTAAATAATTGCGGCCTGCCCCCGCTAGTACGGA
AGACTTGTACTGATATATGCAACAACAAATTTCCCTCAGTTTGGAACCCAACCTCTGATTCCACAATGAAACAAAACAAA
TAGAACAACAGGGAGAATTGTAGTCAATCTTGCCAACCTTCGATCTTCACCGAGGATATGGACACATCATAGGAGAATCA
TCAGCTCTAAAGGGGGACTTGTACTAATATATGCAGCAACAGATTTCCCTAAGTTTGGAACCCAACCTCTGATTCCACAA
TGAAACAAAACAAATAGAACAACATGGAGAATTGTAGTCAATCTTGCCAACCTTCGATCTTCACAAATGAAATTACAGAC
AACAAAATCATGGGGGAAATCAACCTCCCGACTCACAGAACAGTCCAAATATTAACCTCTCCGGGCACAATGAAAAGAAC
CGCTCAAGTCTGAGGAGATAGAGAGGAAGGAGAGCTCCCACCTTTAGTACAACTGATGGTGGAGGAGGACGCCGACAGTG
GAGCGGGGCTTGGGCCAGCGGGGCTTGATTCACCGACAACGGGATTCGGGGCTAGGGTTACCTGTGGTGACAGCAGGGGC
CCAGGTCGGCAGCATCGCGCGGGTCTCTAGCAGCGGCACCGCGCCATTAGCGCAACCATCGCTGGTAAATGTGAGGGGCT
TCAATCTGGTTGTTTTGCAACAACTCATGTAGGGGAGCCAGGCGGAGGAGATGAAGGGAAATGGAAAATTGGAAGGAGGT
GAAAAGTACATGGAGAAAGTAAATGCGGGGGAGATCAATGGTTTTGTGTGCTGGAGACGAGAACACACAGGGAAAAAGGA
TGCAAGGAATTAATGGTCAATGTGGTGTTAAACTTGCTGATGTGGCAGGATGCTGAGGTGGACATGTTGCATGTTGAGAT
AAATCAAGTAGTGGGGGTGAACTTCTTAAATATATAGGATTTTTACATATTTTCAGAATTTTATGAAGTAGAAAAATAAT
GTTTTTCATTTTCTTAAAG--------AGGGCCCGTGCTCTGAATTCTTTTTCGTGATGCCGAATCATAATTTTAATGGG
AGGGCACTTCAGACATTCTTCCCCCAATGATCAGTATAGTTAGGTTTCTTTTGATTATTTTGATGTTTTTTTCTTCTAAA
TTTATTTCCATGAGAGAGAGAGAGGGGTGGAAGGACGGACGGCGTAAGTGTGGCTTTATAGTATAGATAGAAGATAGATA
GCGATAAAACTAGAAGAAGATGGAAGAAGGACAAATATTCAATTTGATGCCCCGGCTCATCTGCACCCGATGAACAGTAA
ATTCAAAAAAAAAT--TAAAAAATTCAAACAATTATGAAAAAGATTAGGTGAAAGATGTTCCAATGCAGAATGCTCGTGC
CAAATTGTATCTTGTTCAGATATCTGAGGAGCTCATGGCAAAAAAGACAAAATCGGTCAAAACAGTCATG-AACAGTAAA
CTTTCTTACAGCTCCAAAAATTGTCTTTTTTGTTGAGAGCTACCAAAATATCCAAACTCCATGAAATTTGGCACGGACTA
CGCGCACATGAGCATCTAGCATCACAAATAAAATCGGAG----TTTTTGATTTTTTTTGTATATTTAACAAATTTCCTGT
TCATCTAGGGTGCAT---------------AAAACGCCGCGTAAAGAG--------------------------------
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------------------ATATAAAATAGAGATAGAAGATAGATAGTGATATAAAACAGAGACAAAAGATAGAAGCTAGA
TAGAGATATAAAACAGAGATAGAAGATAGATAGAGATATAAAACAGAGATAGAAGACAGAAGATAGAGATGACGTCTACA
CGGCTGGAGCGTACGGCTAGGGAGATTTTCTACCCCCATGGATGGCGGTGTGATTTAGGGATAGGATCTACCGTTCCTTA
GGCTGGACACGATTTATTGCTTGGCATTGTATCAAATTATTTTATTTTTAGGGTGCTCTGAACTTTTTGGCTGTGTGCAT
CTAGCTATGCAGAGGTCGGGCTTTCTTTCGATAGGATTGTATCACCTCGATATATCTATTCAATGAAATGTCCTTTATCG
AAAAAGAAGACAGAAGATAGATAGAGATATAAAACAGATAGAAGGTAGCTAGAGATATAAAATAGTGTTAGAAGATAGAG
ATAGATATAGAGATGATATGACATCATTTTAATAAAAATAAACAATTTGAACTAAAATTGAACGTTTGGACAGTGCGCGC
CAATGTCAACA-ATTTTTTCTATATATATGAACCATGGAGCAAACATTCGATTGTGATCCAGGCAACAGTCTCAATTGAA
AAAAAATACCGCACATCACCTCTTATCAGGCACCGC---------ACATTACTTTTGATCCTTAGTAATGATGGCCAAAT
ACATGAGGAACGGTGTCCAAGCAGTTATACTACTTTCTTTTGTCATTGTGGTGTGCTTCGCCTGTCTTGGATGTGCAAAG
GGTAATTTA------TAGTTAAAGTATGTTTAATTCGGAAATAAATTGCTGGCTTAAGATAAC---TTTATTCTTTGTTT
TATGTTAATCAGGTGAAAGCATCAACGACAAGGGGAGCAACGGGATGATCGAAGTAGTCCGGCCCCCTTGTTATAAAGAC
CATCACCAGCCCTCAAGCCTGCAATATTGTTGTCAAACGGATAAGATATGTTGGGTAGACCTCGGGGAATGCTTCACAAA
CTGCCCGTGCAAGATTAATTGCCCACTGCCACCAGCAACACAGTAGTTGTGCCATCTCTCATTCTTTGGGTTAATAAATC
CCAACATTATGGGTCCCGGGATAATCATGTGTTGATCAGCTAGCAAATTTCCTAGAAAAAATTCCAGAAATTTGATCCGC
CGTTTAAATATTTAATAAAAAAACAAGCGAGTTGCGCTCCGTAATTGCACCTAGATTGGTTACATATCATTTTACGTATT
CCATACTTTCATCTCCATGCTGGCTTAATTGCTCTCCCAAATGGACCCAAATTGAGTTTGTGGTAGTCATGGATCTCTGT
TC------------------------------------------------------------------------------
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>chr3B_2390
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------------------------------------------------GAAAAAGGGTTT-CCCCCGCTTTGTA-TACAA
AGC--AACCAACCAAGCCGTACAAGGATAGGTGCTGGGGCGGAAGCAGCACAGCCACGCCCAAAAGAAACGACAGAGAAA
GAGCAAAAGAAACAAATGCCGACAACGGCGGATCAACGAAAACGAAGAAGCCTCGCGAACGCTGCGCCCACCGGGATCTT
CCACTAGGCTCCAAGACTCCGAAGCGCCGGCACCTATCAACACCTCCAAGAAGGATCGCGACGATGACGACGCTGCTGCC
AAGGGTTTCCCCTGGTACACGACGAGGCGAGAGGAAGGGTAGCCCCCGACGCCCTCCCGGAAGGTCAGGTGGCACCCACA
GGCGCCACCGCGCCGGTGTCGGCCCAGCCGACAGGGGTTTCCCCCGATCCCAACCCGCACCTCGGGCGCTACGGAGCCAG
CCACCAAACCAACCACCACCCAGCGCCAACACGGTCAAGAGGCCCCCACGCCGTCTCACCACGACACCGCGAAGTGAGGA
CAACAAGGCGAAGAATCAGAGCCGGGACTAGGGCAGCAGCACCGTCGGCACGCGGGAGGGCCCCACCTCCACCGTCAGCG
ACGGTAGCCGTCCGGACGCAATAGCAGGAGCACACC
>chr1B_2390
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------------------------------------------------GAAAAAGGGTTTCCCCCCGCTTTGTA-TACAA
AGC--AACCAACCAAGCCATACAAGGATAGGTGCTGGGGCGGAAGCAGCACAGTCACGCCCAAAAGAAACGACAGAGAAA
GAGCAAAAGAAACAAATGCCGACAACGGCGGATCAACGAAAACGAAGAAGCCTCGCGAACGCTGCGCCCACCGGGATCTT
CCACTAGGCTCCAAGACTCCGAAGCGCCGGCACCTATCAACACCTCCAAGAAGGATCGCGACGATGACGACGCTGCTGCC
AAGGGTTTCCCCCGGTACACGACGAGGCGAGAGGAAGGGTAGCCCCCGACGCCCTCCCGGAAGGTCAGGTGGCACCCACA
GGCGCCACCGCGCCGGTGTCGGCCAAGCCGACAGGGGTTTCCCCCGATCCCAACCCGCACCTCGGGCGCTCCGGAGCCAG
GCACCAAACCAACCACCACCCAGCGCCAACCCGGTCAAGAGGCCCCCACGCCGTCTCACCGCGACACCGCGAAGTGAGGA
CAACATGGCGAAGAGTCAGAGCCGGGACTAGGGCAGCAGCACCGTCGGCACGCGGGAGGGCCCCACCTCCACCGTCAGCG
ACGGTAGCCGTCCGGACGCAATAGCAGGAGCACACC
>chr1B_2390
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------------------------------------------------GAAAAAGGGTTTCCCCCCGCTTTGTA-TACAA
AGC--AACCAACCAAGCCGTACAAGGATAGGTGCTGGGGCGGAAGCAGCACAGTTACGCCCAAAAGAAACGACAAAGAAA
GAGCAAAAGAAACAAATGCCGACAACGGCGGATCAACGAAAACGAAGAAGCCTCGCGAACGCTGCGCCCACCGGGATCTT
CCACTAGGCTCCAAGACTCCGAAGCGCCGGCACCTATCAACACCTCCAAGAAGGATCGCGACGATGACGACGCTGCTGCC
AAGGGTTTCCCCCGGTACACGACGAGGCGAGAGGAAGGGTAGCCCCCGACGCCCTCCCGGAAGGTCAGGTGGCACCCACA
GGCGCCACCGCGCCGGTGTCGGCCCAGCCGACAGGGGTTTCCCCCGATCCCAACCCGCACCTCGGGCGCTCCGGAGCCAG
CCACCAAACCAACCACCACCCAGCGCCAACACGGTCAAGAGGCCCCCACGCCGTCTCACCACGACACCGCGAAGTGAGGA
CAACAAGGCGAAGAATCAGAGCCGGGACTAGGGCAGCAGCACCGTCGGCACGCGGGAGGGCCCCACCTCCACCGTCAGCG
ACGGTAGCTGTCCGGACGCAATAGCAGGAGCACACC
>chr1B_2390
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------------------------------------------------GAAAAAGGGTTTCCCTCCGCTTTGTA-TACAA
AGC--AACCAACCAAGCCGTATAAGGATAGGTGCTGGGGCGGAAGCAGCACAGTCACGCCCAAAAGAAACGACAGAAAAA
GAGCAAAAGAAACAAATGCCGACAACGGCGGATCAACGAAAACGAAGAAGCCTCGTGAACGCTGCGCCCACCGGGATCTT
CCACTAGGCTCCAAGACTCCGAAGCGCCGGCACCTATCAACACCTCCAAGAAGGATCGCGACGATGACGACGCTGCTGCC
AAAGGTTTCGCCCGGTATACGACGATGCGAGAGGAAGGGTAGCCCCCGACGCCCTCCCGGAAGGTCAGGTGGCACCCACA
GGCGCCACCGCACCGGTGTCGGCCAAGCCGACAGGGGTTTCCCCCGATCCCAACCCGCACCTCGGGCGCTCCGGAGCCAG
CCACCAAACCAACCACCACCCAGCGCCAACACGGTCAAGAGGCCCCCACGCCGTCTCACCACGACACCGCGAAGTGAGGA
CAACAAGGCGAAGAATCAGAGCCGGGACTAGGGCAGCAGCACCGTCGGCACGCGGGAGGGCCCCACCTCCACCGTCAGCG
ACGGTAGCCGTCCTAACGCAATAGCAGGAGCACACC
>chr6B_2390
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------------------------------------------------GAAAAAGGGTTTCCCCCCGCTTTGTA-TACAA
AGC--AACCAACCAAGCCGTACAAGGATAGGTGCTGGGGCGGAAGCAGCACAGTCACGCCCAAAAGAAACGACAGAGAAA
GAGCAAAAGAAACAAATGCCGACAACGGCGGATCAACGAAAACGAAGAAGCCTCGCGAACGCTGCGCCCACCGGGATCTT
CCACTAGGCTCCAAGACTCCGAAGCGCCGGCACCTATCAACACCTCCAAGAAGGATTGCGACGATGACGACGCTGCTGCC
AAGGGTTTCCCCCGGTACACGACGAGGCGAGAGGAAGGGTAGCCCCCGACGCCCTCCCGGAAGGTCAGGTGGCACCCACA
GGCGCCACCGCGCCGGTGTCGGACAAGCCGACAGGGGTTTCCCCCGATCCCAACCCGCACCTCGGGCGCTCCGGAGCCAG
CCACCAAACCAACCACCACCCAGCGCCAACACGGTCAAGAGGCCCCCACGCCGTCTCACCACGACACCGCGAAGTGAGGA
CAACCAGGCGAAGAATCAGAGCCGGGACTAGGGCAGCAGCACCGTCGGCACGCGGGAGGGCCCCACCTCCACCGTCAGCG
ACGGTAGCCGTCCGGACGCAATAGCAGGAGCACACC
>chr5B_2390
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------------------------------------------------GAAAAAGGGTTT-CCCCCGCTTTGTA-TACAA
AGC--AACCAACCAAGCCGTACAAGGATAGGTGCTGGGGCGGAAGCAGCACAGTCACGCCCAAAAGAAACGATAGAGAAA
GAGTAAAAGAAACAAATGCCGACAACGGCGGATCAACGAAAACGAAGAAGCCTCGCGAACGCTGCGCCCACCGGGATCTT
CCACTAGGCTCCAAGACTCCGAAGCGCCGGCACCTATCAACACCTCCAAGAAGGATCGCGACGATGACGACGCTGCTGCC
AAGGGTTTCCCCCGGTACACGACGAGGCGAGAGGAAGGGTAGCCCCCGACGCCCTCCCGGAAGGTCAGGAGGCACCCACA
GGCGCCACCGCGTCGGTGTCGGCCAAGCCGACAGGGGTTTCTCCCGATCCCAACCCGCACCTCGGGCGCTCCAGAGCCAG
CCACCAAACCAACCACCACCCAGCGCCAACACGGTCAAGAGGCCCCCACGCCGTCTCACCACGACACCGCGAAGTGAGGA
CAACACGGCGAAGAATCAGAGCCGGGACTAGGGCAGCAGCACCGTCGGCACGCGGGAGGGCCCCACCTCCACCGTCAGCG
ACGGTAGCCGTCCGGACGCAATAGCAGGAGCACACC
>chr6A_2390
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------------------------------------------------GAAAAAGGGTTTCCCCCCGCTTTGTA-TACAA
AGC--AACCAACCGAACCATACAGAGATAGGTGTTGGGGCGGAAGCAGCACAGTCACGCCCAAAAGAAACGACAGAGAAA
GAGCAAAAGAAACAAATGCCGACAATGGCGGATCAACAAAAACGAAGAAGCCTCACGATCGCTGCGCCCACCGGGATCTT
CCACTAGGCTCCAAGACTCCGAAGCGCCGGCACCTATCAACACCTCCAAGAAGGATCGCGACGATGACGACACTGCTGCC
AAGGGTTTCCCCCGGTACACGACGAGGCGAGAGGAAGGGTAGCCCCCGACGCCCTCCCGGAAGGTCAGGTGGCACCCATA
GGCGCCACCGCGCCGGTGTCGGCCACGCCGACAGGGGTTTCCCCCGATCCCAACCCGCACCTCGGGCGCTCCGGATCCAG
CCACCAAACCAACCACCACCATGCGCCAACGCGGTCATGAGGCCCCCACGCCATCTCACCACGGCACCGCGAAGTGAGGA
CAGCGCGGCGAAGAATCAGAGCCGGGACTAGGGCATCAGCACCGTCGGCACGCGGGAGGGCCCCACCTCCACCGTCAGCG
ACGGTAGCCGTCTGGACGCAATAGCAGGAGCACACC
>chr2A_2390
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------------------------------------------------GAAAAAGAATTTCCCCCCGCTTTGTA-TACAA
AGC--AACCAACCAAGCCGTACAAGGATAGGTGCTGGGGCGGAAGCAGCACAGTCACGCCCAAAAGAAACGACAGAGAAA
GAGCAAAAGAAACAAATGCCGACAACGGCGGATCAACGAAAACGAAGAAGCCTCGCGAACGCTGCGCCCACCGGGATCTT
CCACTAGGCTCCAAGACTCCGAAGCGCCGGCACCTATCAACACCTCCAAGAAGGATCGCGACGATGACGACGCTGCTGCC
AAGGGTTTCCCCCGGTACACGACGAGGCGAGAGGAAGGGTAGCCCCCGACGCCCTCCCGGAAGGTCAGGTGGCACCCACA
GGCGCCACCGCGCCGGTGTCGGCCAAGCCGACAGGGGTTTCCCCCGATCCCAACCCGCACCTCGGGCGCTCCGGAGCCAG
CCACCAAACCAACCACCACCCAGCGCCAACACGGTCAAGAGGCCCCCACGCCGTCTCACCACGACACCGCGAAATGAGGA
CAACAAGGCGAAGAATCAGAGCCGGGACTAGGGCAGCAGCACCGTCGGCACGCGGGAGGGCCCCACCTCCACCGTCAGCG
ACGCTAGCCGTCCGGACGCAATAGCAGGAGCACACC
>chr7D_2391
AAAAA---------------------------------------------------------------------------
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-------------------------------------------------------GGTTTCCCCCCACTTTGTATTACAA
AGC--AACCAACCGAACCATATAGGGATAGGTGCTGGGGCGGAAGCAGCACAGTCACGCCCAAAAGAAACGACAGAGAAA
GAGCAAAAGAAACAAATGCCGACAACGGCGGATCAACAAAAACAAAGAAGCCTCGCGATTGCTGCGTCCGCCGGGATCTT
CCACTAGGCTCCAAGACTCCGAAGCGCCGGCACCTATCAACACATTCAAGAAGGATCGCGACGATGACGACGCTGCTGCC
AAGGGTTTCCCCCGGTACACGATGAGGCGAGAGGAAGGGTAGCCCCCGACGCCCTCCCGGAAGGTCAGGTGGCACCCACA
GGCGCCACCGCGCCGGAGTCAGCCATGCCGACAGGGGTTTCCCCTGATCCCAACCCGCACCTCGGGCGCTCCGGAGCTTG
CCACCAAACCAACCACCACCCTGCGCCAACGCGGTCTTGAGGCCCCAGCGCCGTCTCACCACGGCACCGCGAAGTGAGGA
CAGCACGGCGAAGAATCAGAGCCGGGACTAGGGCAACAACACCGTCGGCATGCGGGAGGGCCCCACCTCCACCGTCAGCG
ACGGTAGCCGTCCGGACGCAATAGCAGGAGCACACC
>SNPs
S-S-SSSSSSSSSSSSSS-------------------------------------S-----------------------S
-SSSSS--SSS---------------------------------------------------------------------
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--------------------------------------------------------------------S-S-------S-
------S------------SSSSSSSS--S----SS-S-------SS---------------------S----S------
----------------SS-------------S---S-------S---------S-S-S--S-S--------S---SS--S
---------------------------------------------------------------S----------------
-S----S---------------------S--SSS----S-----SS------SS--------------------S-----
--------------SS---------S-S------S----SSSS------------------------SSS---S------
-------S--------SS-SS---------------------------------------------SSSSS---------
--------S--SS------S-----------S------------S----S-S----------------------S----S
-SS----------------S--------S----SSSSS-SSSS----S---------SS---S--S---------S----
---S--SS-------SSSSSSSSSSSSSSS-----S--S----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS----------------------------------------SSSSS-----------------
--------------------------------------------------------S-----------------------
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--------------------------------------------S-----------------------------------
-----S-----------------------S--------S------S----S-------------S-------------SS
-----------S--------------S-----------------------------------------------S-----
--S-----------------------------SSSSSSSSSSSSS-----------------------------------
----------------------------------------------------------S-----S-----------S--S
---------SSSSSS----------S-----S----------SSS-SSSSSSS-S----SS-SSSS----S---------
-S-----------------------S-----------------------------------S------------------
-----S------S----------------S-----------S-S-------------S----S-----------------
--------------------------S-----------------------------------------------------
--S--S------------S-------------------------------S--------SS---S---------------
-S--------SS------------S-----S---------S-S---S----------------------------S-S--
--------SS---------S---------------------S--------------SS-S-S-S------S----S----
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S----------------SSS-
-SSSS-----------S---------------------------------------------------------------
------------S----------------------S------S-------------------------------------
----S--------------------------------------------------S-----------S---------S--
-------------------------------------S-----------------------------------------S
--------------------S--------------------------------------S--------------------
----S---------------------------------------------S-----------------------------
--------------------------------S----------------------S------------------------
------------------------------------
>forward_3460
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CAAAGGTGAACATGGGTGCG------------------------------------------------------------
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>reverse_5229
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----------------------------GGACGCATCCCTTGGTACAA--------------------------------
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------------------------------------
