>input_sequence_63064
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--------------------------ATGTCCAAGCATCAACTACACACACCTTGCGCTACTGTACAAC-----------
CAACACACGCAGCAAGCATCTGATCATAATAATCTCTCCCCTCCGGCACCACACACACAGCTTCCTCTTATTTTTGCAAG
CTAGCTAGAGCGAGCTATAATTATTAAGATGAAGACCAAGGCTTCCACATTCTTCAAGCAGATGCTGTCCACCATCGTCG
CCGTGGTCAAGGCCAAGTCCACGACGGTGCGCGCCAAGACCAGCACCCTCAAGACGCGCCTCCTCGTCCTCGGCATCCTC
CGCAACAGGAAGCTCCTCGTCAGCGCCATCAACCACAAGATCCACGCCATCATGGGCCAGGACGACCACGCGCGCAAGGA
GGAGGCCGCCCAACAAGACGACGGCGGCAAGAAGGCCATCGTGCTCTACACGTCGCCCAGCTACGTGACGGAGCGCGACG
TGGAGGCCGCCC---------------AGGAGGAGGAGGACAGCGACGACGAGTACTTGACGCACTCGCTGTTCCGCGAG
GAAGACGACGATGACGACGAGCTGGTGAACGCGCCAGGGTCGGTGATTGACGTGGTGCGCGACGCCAAGGAGAAGGAGGG
GGAGGGGGCTGAGTTCCGGCTGGAGGACGAGATCGACCATGTAGCCGACGTCTTCATCCGCCGGATCCACAAGCAGCTCA
AGCTGCAGAAGCTCGAGTCGTTCAAGAGGTTCTGCGAGATGATGGAGAGGAGCGCTTGATCCAC----------------
----CTCCACTCCAGTGATTTATT-ATTCATAAGTATGCAATGGCGCCAGCTCCATCACTCCTTAAGCCAAGATTATGTT
TAACTTAATTGGACGCCCATGCATGTAAGTAGAAGCAAAAGATGAAGCCAGGCAAGAAGATGCTTATCTTCTGGTAGGGT
TTTAGTGGGGATGCCAAGGTCTACTACTCCTACGTGGTACTTTAATCATTACGTACTCATGTTCTTTTGTTCTTTAATCT
GGGGGAAGATTGTAAAAGTGCTCAAGTTTTGAGGAAAAAACCAATAAA--------------------------------
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>chr2B_1_TraesCS2B01G299100
GTCGGTGCTAGCTAGCTGTTCCTGTGCCGAGATCCC----GTCCACTTGCGGATGCATGCGGCGTGACGCTGCCCTGCGC
GGGCTTGCCATTGCCTGCTTGCTGGTCCAT------GGTTGTACGCGGGCGATTCGACTCGACAGCTCGCGGC-------
------------GCCGGCTGCTTTTTGTGCCATGGCCATTTGGGATGGGAA-CCTTAGCGGCGAAGGAT----TCCCACA
TGCAAGCACGCACGCAGCATCGACCAGCT------CCGCCCAATCACCCTACCCTGTCTATA------------------
--------------------------------------------------------------------------------
---------------------------------GTAAGAAGAAGAGCTGCTTAATCTATAGTCGTACTCGCGGTTCCCAG
AATACTCAAATTTTTACCTCCCCTTTCGACGTTGAGTGTGGCACCGTCCCAGCTGACACTTACCAAACCGTTTGGCCA--
--------------GTACGGTATATCCCATGTGTTCTTTTTTCTTTTTTTCTTTTTTTTTTGCGAGGAAATCT-----CA
TGTGTTGTTGATGGTCCCACAATTTAC-AACAGCGCCATCACTCACTAGCTATGGCTAAGCAAGCGGAAACAAGCTGCCT
ACAATAATGTGAGTAACTGACT----CACAATGACCACAATACTGCCAAAGTTAAAAGGCCACAAACTTATTAGTAGC--
-A------TATTCATGAATGAACACCTCACCATGAACTTTGTTACTACACGGACATGGAAATAACTATTAAAAACAGGAT
AACCTAAAGCTTTTTCTTTGAAAGGAAAGAACCCGACCGGCCGGTTAGCCAAAACATTGGACAACTGTTACCCACGAGGA
GCCCTT----TGCATGCATGCATACCCATCATC-TTTTTGACTACTTTTCCTTTGGCCCGCGGGCTGC---GGGCTTTGT
TAATTGTTACACACAC--ACACACACACCCATTGTTTCCCGTTGGTGCCCTTTCCTTAGCTCACCTGCTTTCGTGCGATG
CTGAAACTTCTCTAG--GACATCCACTCGCAATTGCTCACCCCCACCCACCCTCTGCTAC--------TGCTATATATAC
CCATGGCATCCCACGGTCAAAACTCCATGTCCAAGCATCAACTACACACACCTTGCGCTACTGTACAAC-----------
CAACACACGCAGCAAGCATCTGATCATAATAATCTCTCCCCTCCGGCACCACACACACAGCTTCCTCTTATTTTTGCAAG
CTAGCTAGAGCGAGCTATAATTATTAAGATGAAGACCAAGGCTTCCACATTCTTCAAGCAGATGCTGTCCACCATCGTCG
CCGTGGTCAAGGCCAAGTCCACGACGGTGCGCGCCAAGACCAGCACCCTCAAGACGCGCCTCCTCGTCCTCGGCATCCTC
CGCAACAGGAAGCTCCTCGTCAGCGCCATCAACCACAAGATCCACGCCATCATGGGCCAGGACGACCACGCGCGCAAGGA
GGAGGCCGCCCAACAAGACGACGGCGGCAAGAAGGCCATCGTGCTCTACACGTCGCCCAGCTACGTGACGGAGCGCGACG
TGGAGGCCGCCC---------------AGGAGGAGGAGGACAGCGACGACGAGTACTTGACGCACTCGCTGTTCCGCGAG
GAAGACGACGATGACGACGAGCTGGTGAACGCGCCAGGGTCGGTGATTGACGTGGTGCGCGACGCCAAGGAGAAGGAGGG
GGAGGGGGCTGAGTTCCGGCTGGAGGACGAGATCGACCATGTAGCCGACGTCTTCATCCGCCGGATCCACAAGCAGCTCA
AGCTGCAGAAGCTCGAGTCGTTCAAGAGGTTCTGCGAGATGATGGAGAGGAGCGCTTGATCCAC----------------
----CTCCACTCCAGTGATTTATT-ATTCATAAGTATGCAATGGCGCCAGCTCCATCACTCCTTAAGCCAAGATTATGTT
TAACTTAATTGGACGCCCATGCATGTAAGTAGAAGCAAAAGATGAAGCCAGGCAAGAAGATGCTTATCTTCTGGTAGGGT
TTTAGTGGGGATGCCAAGGTCTACTACTCCTACGTGGTACTTTAATCATTACGTACTCATGTTCTTTTGTTCTTTAATCT
GGGGGAAGATTGTAAAAGTGCTCAAGTTTTGAGGAAAAAACCAATAAATGAAGCAAATAAATAGACGGCATATACTGTAT
TAGCAAGCCGAAATGTAACACGTACTGATCACAAATTCTTGAAGAACAAACACGGGTATTGCAGGCAACTGAACAAATTA
GCTTCAACTAAGATTTTCTGTTAACCCCCGAGAGTTGAACTCAACACGTAGT-ACATACAGTTCAAGCAGTCAT---AAG
AAAAGCAGAATCAAGCTGATGAC--CACACGACAACGAAAAAGGGTTCGCTAGCTTTATGGACGGATGCCTCTGCTTTTG
GCCAAGAACAGAACAGCTAACGCATACCAGTAATCCGTAGGATC-----AGT----GTCGTCGGCGTTTTGCATTGCGGC
GCGCCGGCATCCCCTCGGCCTCCTCCAACTCCAACTTGACGTCCTTGGCGAGGGTGACCGCCGCCACGTCCTCCATTGCC
TCCTGCGCGGAGAGACGCAGGGAGAATTTCACGGGCGGCGCCGGGGCATTCCGCTGCCTTGCCCGCCGCCGCGGCCTCTG
TTCCCTATTGGCCTCCTGCCTGAGATACCTGGCGATCTCGGATTGTAATTCCTTGGTGTCCATCGCCAACGCGGCCGCAA
CTCCTATGTCGTAGAGATCGCGCTCGCCGTTTGTGTCGCCGGAGGTGGAGGTGGTTGGCGATGAGGACGTCGAGGACCCG
ATCGGATTGTCCTGCAGTGCTGACGAAGGGATGTGTTCCCCAGAAGGAACCCTAGGAGAGTGTAGATCCGTTTCTTGATC
AACCGCGGACACTTTGCCGCTTGCCCCTGCTTTCATGACCCGACTGACCGTGTTGTCTTGGCCGGCGATGACGTCGACCG
GCGGCGCCGTGGGCGATCTGGGCGGCGAACGGATGGCCACAGTTAAAACCCTGATATCTTTCCCTGCGGCGGGAGCAGAC
TCAGCAACGCCCACACGAGCATCCTTTCTCTCAGCAGCGGGAGCTTGTTCTCCACGGTTTGCCCCATCACCGACCGTCAC
CGGCGATGGCGAGGCAACTCGTC
>chr2A_4
---GGTGCTAGCTAGCTGTTCCTGTGCCGAGATCCCCCCCGGCCACTTGCGGATACATGCGGCGTGACGCTGCACTGCGC
TTG-----CATTGCCTGCTTGCTGGTCCATCCATATGGTTGTACACGGGCGATTCGATTCGACAGCTCGGAGAAGCAGCT
CGCGCGGCGCCGGCCGGCTGCTTTTTGTGCCATGGCCATTTGGGATGGGAA-CCTTAGCGGCCAAGGAT----TCCCACA
TGCAAGCACGCAGGCAGCATCGAGAGCAGCTCCGCCCGCCCAATCACCCTACCTCTATAGTACTCCCTCTGTAAACTAAT
ATAAAAGCGTTTCCTACTCTATAGTACTCCCTCTGTAAACTAATATAAAAGCGTTTAGATCACTGTTTTAATGATCTAAA
CACTTTTATATTAGTTTACGGAGAGAGTACTACGTAAGAAGAAGAGCTGCTTAATCTATAGTTGTACTCGTGGCTCCCAG
AATACTCACTTTTGAGCTCCCCCTC-CGACGTTGAGTGTGGCACCGTCCCAGCTGAGATTTACCAAACACTTTTATTTGG
CCCGCTACGGTATGGTATGGTAAATCTCATGTGTTCTTTTTTCTTTTTC------TTTTTTGCGAGGAAATCTAATCTCA
TGTGTTGTTGATGGCATCACAATTTACAAACAGCCCCATCTCTCACTAGCTATAGCT-AGCAAGCGGAAACAAGCTGCCT
ACAATAATGTGAGTGC----CT----CACAATGACCGCAATACCGCCAAAGTTAAAAGGCCACAAACTTGGTGGTACTAG
TATAGGAGTATTCATGAATGAACACCTCACCATGAACTTTCTTACTACACACACATGGAAATAACTATTAAAAATAGGAT
AACCTCAAGCTTTTTCTTTGAAAGGAAAGAACCCGCCCGCCCAGTTAGCCAAAACATTGGACAACTGTTACCCACGAGGA
GCCCTTTGCATGCATGCATGCATACCCATCATC-TTTTTGACTACTTTTCCTTTTGCCCGCGGGCTGCTGCGGCACTTGT
TAATTGCTA----CAC--ACACACACACCCATCGCTTCCCCTTGGTGCCCTTTCCTTAGCTCACCTGCTTTCGTGCGATG
CTGAAACTTGTCTAGGAGACATCCACTCGCAATTGCTCACCCCCACCGTCTGCTACTGCTACTGCTAGTGCTATATATAC
CCATGGCATCCCACGGGCAAAACTCCATGTCCAAGCATCAACTACACACACCTTGCGCTACTGTACAG------CCACCA
CAGTCCACGCAGCAAGCA------------------TCCCCTCCGGCACCACATACACACCTTTA------TTTTGCAGG
CTAGTTAGAGTAGTGAACTGTAATCAAGATGAAGGCCAAGGCTTCCACATTCTTCAAGCAGATGCTGTCCACCATCGTCG
CCGTCGTCAAGGCCAAGTCGACGGCGGTGCGCGCCAAGACGAGCACCTTGAAGACGCGCCTCCTCGTCCTCGGCATCCTC
CGCAACAGGAAGCTCCTCGTCAGCGCCATCAACCACAAGATCCACGCCATCATGGGCCAGGACGACCACGCGCGCAAGGA
GGAGGCCGCCCAACAAGACGACGGCGCCAACAAGGCCATCGTGCTCTACACGTCGCCCAGCTACGTGACGGAGCGCGACG
TGGAGGAGGCCGCCGCCGATGAGCAGGAGGAGGAGGAGGAGAGCGACGACGAGTACTTGACGCACTCGCTGTTCCGTGAG
GAAGACGACGACGACGACGAGCTGGTGAACGCGCCGGGGTCGGTGATTGACGTGCTGCGCGACGCCATGGAGAAGGAGGG
GGAGGGGGCTGAGTTCCGGCTGGAGGACGAGATCGACCATGTCGCCGACGTCTTCATCCGCCGGATCCACAAGCAGCTCA
AGCTGCAGAAGCTCGAGTCCTTCAAGAGGTTCTGCGAGATGATGGAGAGGAGCGCTTGATCCACCTCCATGGAATCAGAT
CCACCTCCAGTCCAGTGATTTATTTATTCATAAGTATGCAATGGCGCCAGCTCCATCACTCCTTAAGCCAGGATTATGTT
TAGCTTAATCGGAGGCCCATGCATGTAA--AGAAGGAAAAGATGAAGCCGGGCAAGAAGATGCTTATCTTCTGCTAGGGT
TTTAGTGGGGATGCCAAGGTCTACTAGTCCTACGTGGTACTTTAATCATTATGTACTCATGTTCTTTTGTTCTTTAATCT
GGGGGAAGATTGTAAAAGTGCTCAAGTTTTGAGGAAAAAAACAATAAATGAAGCAAATAAATAGACGGCATATATC----
-AGCAAGCCGAAATGTAACACGTACTGATCACAAATTCTTGAAGAACAAACACGGGTATTGCAGGCAACTGAACAAATTA
GCTTCAACTAAGATTTTCTTCTAATCCCCGAGAGTAGAACGCAACACGTACTAACATACAGTTCAAGCAGCCATAAGAAG
AAAAGCAGAATCAAGCT--------CACATGACAAGGAAAAAGGGCTCGCTAGTTTTATGGATGGATGTCTCTGCTTTTG
GCCAAGAAGAGAAGAGCTAACGCATACCAGTAATCCGTAGGATCGGATCAGCTAGCGTCGTCGACGTTTTGCATTGCGGT
GCGCCGGCATCCCCTCGGCCTCCT------CCAACTTGATGTCCTTGGCGAGGGAGACGGCCGCCACGTCCTCCATTGCC
TCCTGCTCGGTGAGACGCAGGGAGAATCTCACGGGCGGCGCCGGGGCATTCCGCTGCCTTGCCCGCCGCCGCGGCCTCTG
TTCCCTATTGGACTCCTGCCCGAGATACCTGGCGATCTCGGATCGTAATACCTCGGTGTCCATCGCCAACGCTGCCGCAA
CTCCTATGTTGTAGATATCGCCCTCGCCGTTTGTGTCGCCGGAGGTTGAGGTGGATGACGATGAGGACGTGGAGGAGCCG
ATCGGATTGTCCTGCGGTGCCGACGAAGAGATGTGTTCCCCAAAAGGAACCATAGGAGAGTGTAGATCCGTTTCTTGATC
AACCGCGGACACTTTGCCGCTTGCCCCTGCTTTGATGCCCAGACTGACCGTGTTGTCTTGGCCGGCGATGAC--------
-------------CGATCTGGACGGCGAACGGATGGCCACGGGTAAAACCCTGATATCTTTTCCCGCAGA---AGCAGCC
TCAGCCACGCCCACACGAGCATCCTCTCTCTCAGCCGC------------------------------------------
-----------------------
>chr2D_4
---GGTGCTAGCTAGCTGTTCCTGTGCCGAGATCCC----GGCCACTTGCGGATGCATGCGGCATGACGCTGCACTGCGC
----TTGCCATTGCCTGCTTGCTGGTCCAT------GGTTGTACGCGGGCGATTCGATTCGACAGCTCGCGGC-------
------------GCCGGCTGCTTTTTGTGCCATGGCCATTTGGGATGGGAAACCTTAGCGGCGAAGGATTCCTTCCCACA
TGCAAGCACGCAGGCAGCATCGACCAG-----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TACGTACGAAGAAGAGCTGCTTAATCTATAGTCGTACTCGTGGTTCCCAG
AATACGCACTTTTGAGCTCCCCCTC-CGACGTTGAGTGTGGCACCGTCCCAGCTGAGATTTACCAAACACTTTAATTTGG
CCCGCTAC-----GGTATGGTAAATCTCATGTGTTCTTTTTTCTTTT-C------TTTTTTGCGAGGAAATCT-----C-
-------TTGACGGCATCACAATTTAC-AACAGCCCCGTCTCTCACTAGCTATAGCT-AGCAAGCGGAAACAAGCTGCCT
ACAATAATGTGAGTGC----CTGACTCACAATGACCGCGATACCACCAAAGTTAAAAGGCCACAAACTTGGTAGTAGTAG
TA------TATTCATGAATGAACACCTCACCATGAACTTTGTTACCACACAGACATGGAAATAACTATTAAAAATAGGAT
AACCTAAAGCTTTTTCTTTGAAAGGAAAGAACCCGGCCGGCCGGTTAGCCAAAACATTGGACAACTGTTACCCACGAGGA
GCCCTT----TGCATGCATGCATACCCATCATCTTTTTTGACTACTTTTCCTTTTGCCCGCGGGCTGC---GGCCTTTGT
TAATTGTTACACACACGCACCCACACATCCATTGTTTCCCCATGGCGCCCTTTCCTTAGCTCACCTGCTTTCGTGCGATG
CTGAAACTTCTCTAGGAGACATCCACTCGCAATTGCTCACCCCCACCGTCTAA----TAC--------TGCTATATATAC
CCATGGCATCCCACGGGCAAAACTCCATGTCCAAGCATCAACTACACACACCTTGCGCTACTGTACAAGTACAACCAACA
CAATCCACGCAGCAAGCA------------------TCCCCTCCGGCACCACATACACACCTTTA------TTTTGCAAG
CTAGTTAGACTAGTGAACTATAATCAAGATGAAGACCAAGGCTTCGACATTCTTCAAGCAGATGCTGTCCACCATCGTGG
CCGTGGTCAAGGCCAAGTCCACGGCGGTGCGCGCCAAGACGAGCACCCTCAAGACGCGCCTCCTCGTCCTCGGCGTCCTC
CGCAACAGGAAGCTCCTCGTCAGCGCCATCAACCACAAGATCCACGCCATCATGGGCCAGGACGACCACGCGCGCAAGGA
GGAGGCAGCCCAGGAAGACGACGGAGGCAAGAAGGCCATCGTGCTCTACACGTCGCCCAGCTACGTGACGGAGCGCGACG
TGGAGGCCGCCGCCG---------AGGAGGAGGAGGAGGAGAGCGACGACGAGTACCTGACGCACTCGCTGTTCCGCGAG
GAAGACGACGATGACGACGAGCTGGTGAACGCGCCGGGGTCGGTGATTGACGTGGTGCGCGACGCCAAGGAGAAGGAGGC
GGAGGGGGCTGAGTTCCGGCTGGAGGACGAGATCGACCATGTCGCCGACGTCTTCATCCGCCGGATCCACAAGCAGCTCA
AGCTGCAGAAGCTCGAGTCGTTCAAGAGGTTCTGCGAGATGATGGAGAGGAGCGCTTGATCCACATCCCTAGAATCAGAT
CCGCCTCCAGTCCAGTGATTTATT-ATTCATAAGTATGCAATGGCGCCAGCTCCATCACTCCTTAAGCCAGGATTATGTT
TAACTTAATCCGAGACCCATGCATGTAAGTAGAAGGAAAAGATAAATCCAGGCAAGAAGATGCTTATCTTCTGCTAGGGT
TTTAGTGGGGATGCGAAGGTCTACTA------CGTGGTACTTTAATCATTACGTACTCCTGTTCTTTTGTTCTTTGATCT
GGGGGAAGATTGTAAAAGTGCTCAAGTTTTGAGTGAAAAAACAATAAATGAAGCAAATAAATAGACGGCATATACTGTAC
TTCACGTCAGTACG----------------------------------------------GCAGGCAACTGAACAAATTA
GCTTCAACTAATATTTTCTACTAATCCCCGAGAGTTGAACTCAACACGTACTAACATACAGTTCAAGCAGTCAT---AAG
AAAAGCAGAATCAAGCTGATGACCGCACATGACAACGAGAAAGGGCTCGCTAGTTTTATGGACGGATGCCTCTGCTTTTG
GCCAAGAACAGAACAGTTAATGCATACCAGTAATCCGTAGGATCGGATCAGT----GTCGTCGGCGTTTTGCATTGCGGC
GCGCCGGCATCCCCTCGGCCTCCT------CCAACTTGACGTCCTTGGCGAGGGTGACCGCCGCCACGTCCTCCATTGCC
TCCTCCTCGGAGAGACGCAGGGAGAATCTCACGGGCGGCGCCGGGGCATTCCGCTGCCTTGCCCGCCGCCGCGGCCTCTG
TTCCCTATTGGCCTCCGGCCCGAGATACCTGGCGATCTCGGATCGTAATACCTCGGTGTCCATCGCCAACGCTGCCGCAA
CTCCTATGTCGTAGAGATCGCGCTCGCCGTTTGTGTCGCCGGAGGTGCATGTGGATGACGACGAGGACTTCAAGGACCCG
ATCGAATTGTCCTGCAGTGCCGACGAAGAGATGTGTTCCCCAGAAGGAACCCTAGGAGAGTGTATATCCGTTTCATGATC
AACCGCGGACACTTTGCCGCTTGCCCCTGCTTTGATGGCCAGACTGACCGTGTTGTCTTGGCCGGCGATGACGTCCACCG
GCGGCGCCGTGGGCGATCTAGACGGCGAACGGATGGACACAGTTAAAACCCTGACATCTTTCCCCGTGGA---AGCAGCC
TCAGCGACGCCCACACGAGCATCCTTTCTCTCAGCCATGGGAGCGTGTTCTCCACGGTTCGCCCCATCACCGT------C
CGGCGACGGCGAGGCAACTCGTC
>SNPs
SSS--------------------------------------S-------------------------------S------
SS-S-----------------------------------------------------S----------------------
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------------S--------------SS------------------------SSSSSSS--------------------
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----------------------------------------------------------------------S---------
--------SS---SSS-SS-----SS------------------------------S-S---------SS---SSSSS--
-----------------S----S---S---------------------SSSSSSS-------------------------
--------------SSS-----------------S-----S------------S---S----------------------
--------------SSSSSS----------------S------S-------------------------SS------S--
--------------------------------------------------S-----------------------S-----
-----------------------------------S--------------------------------------------
------------------------------------------------------S------------------S------
----------------------------------------S---------------------------------------
-----------------------------------------------SS-SSSSSSS-----------------------
----------------S---------------------------------------------------S-----------
---SS-------------SSSSSSSSSSSSSSSSSS-----------------S-----S---SSSSSSSS---------
----S-----SSSSSS-SS--S--S-------------------------------------------------------
-----------------------S----------------S---------------------------------------
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-----------S----------------------------S---------------------------------------
-----------------------------------S--------------------------------------------
------------------------------------------S-------------------------------------
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---------S------------------------------------------------------------S---------
---------S---S---------------------S-------------------------------------S------
--------------------------S-----------------------------------------------------
----------------------------------------S--------------------------------------S
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-------------------SS---S-------------------------S-----------------------------
-----------------------------S---------------S-------S--------------------------
--------------------------------------------------------------------------------
------------------------SSSSSS--------------------------------------------------
------S--------------------S----------------------------------------------------
--------------------S----------------------S-----S---S------------------S-------
------------------------------------------------------S--S----------------------
--------------------S-------S---------------------------------------------------
---------------------------------S---S--S----------------------------------S----
---------------------S------------------------------------------S----SSSS-----S-
-----S-----------------------------S--------S--------------S------------SSSSSSS-
------S----------------
>forward_1081
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---------------------CACACACCCATTGTTTCCCG---------------------------------------
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>reverse_2670
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-----------------------------TCCAACTTGACGTCCTTGGC-------------------------------
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