>input_sequence_63049
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ATGGCCCCCAAGGAGCAAAGACTTCACGCTGATCTGTTCA
AGGTGACCCACCAGAAGGTGGTTGATGCCATCAGGGCAAACATAACTAATCAGACCTCATATGATGTAAGATGTAATTGT
ATTATCTTGATTGGTTAGGATGTTGATTTCTTTTTCAGTTTTGCTAAAGCACATTTAGATGTGCCCAAGTATTTGCACAT
CTAAGTCATACCATTGATTTTACATGAAAATTTGTGCATACATTTTCTTTGTCTTTTTCCTTTTTCTTTGCAGTGTGATT
TGGTCACTTACATGTGCAATAACTTGGGCACTAGACAAACCCTTTCTTTTTCCTGATCAGTTTTTTATTTAGTGTTCTTC
TCTTTTTCTTACAGCAAATTAAGATTATCCAACTCAGCTGCGAGCCGACAGATGAAGAATTGTTGATGTTTTATGCGGAG
GTCCATAATCACCTATTGGAGGTGGCTTCCCTTTCTATCAACAAGAACGTTGATTTCTTTGCGCCAGAGGAGGGATTCGC
GGAAGGCTTTGTTCCTGAGATTGCAGAAGGACTACCAGTTTTAAGGCCTCAAACTAAGGTACATTCCCCTTTTTCTGCCA
AGCATCATGGGTCTGCCTTTCTCTGCCTATCACCTTTCCATCATGGTTTGAGATGAATCACAAGTGATCTTGATTACATA
TGCATTCAATTGTAGTTCAATAAAAGTAATTTTTACAATGCTTTTGAACAGTTTTTAACTTTCTTGCAAATGATTTGGTT
TTAATGGAAGTTTTGTCTTTGTGT-GCAGAATATATCATATTTCATTGTCGAGTTTGTTGGTGGTCCTGGAGAACCACGC
CTGCAATTTGCTGTTCGCCATGACAATCTGTACTGTGTCGGTTTCCGGGTGTTGTCTGCCAATGATAACGCAAAAACCAA
AGATTGGTCCTCTTTTGGTGATGTTAACCTTTTGAAGTGTGCTGCATTTCCTAATGTTGAGGCATCTAGATTGTCAGAGA
GCTATAAATCTTCGTAA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>chr2D_1_TraesCS2D01G587900
GGCGCTCCCAATGACGTCGACCACGGCGACAGAAGGCACGTTTTGCTACTTGGCTGGCTGGTATGCATGGTCTTTTCAGC
TCCCTTGATTGATCTTTTGGCCATGGTTTTCATCTGTGTCAATCTACCTCGCGCAGTGGTCGGACACAAGGAGCTCGGGA
CGGCACATATGTTGTGCGGTGCAAGCAACTTCTTCTCTATTGGATTGGATTGGATTGGATTTCCGCTGGTAAGCATAAAT
TTTCACCTCCGTTGTTCCGTCGGTATAGTTGTTGTATCCATCCATCCTGCTCATCCGTCAATCCAATTTTTGACGCAGAG
AACACGGCAAAGACCGCCATCCACACCACACCACAGGACGTGTCCGGCGGTCCACTGGGCCAAAGGCCAGATCTCGGCCC
AGGCTACCCCGTACGCATGATGTGCGCAGGCCCAACCCGCCGCCTGTGATCCACCGGGCTCGTTATTGGGTGGACGGGCC
TGGCTATGGATGGATCTGGCCCAACAGGTGCCATCACCTCCCGACCCAGCGCCGTCTCTCTCTTTCGGGGGAGGAAAGGG
CGAGAGGTCGAGGGGCGGCGGCGACGACAGCGTCGACCGGTGGCGGAGGCGGCCGCGACCACCTCAACCCCCCGTGACCA
GAGGTACTTGACGCGTCTCTCCCTCTCCTTATCCCCCCATCATCTCTCTCCCTAGGTCTCATATCTCTGTCAAACAGCCG
GCCATCAATCCGCCATAGCTTTTCGGGGGAACGTGGTGAGGTCGATCTGACCGGCGGTGATCTGTTTTGGAGGCGGCCGT
CCCCAGCCCAAGCTCGTCTGCCTAAGGTACCTTACCTGCATTTCGAGTTCCCACCCTCCCTGTATCCTCTCTCTCTCAAC
AGCCCTTCATCAATCCGCATCTCAAATTTGGTTAGGTCGACGGGAAGACGGGGCTGAGGCTGCATCTGCGGGTTATATCT
GTTGAGGACGCTGCCTTTCTTCCAACGAAAGCTTTCTCGGATGGCCCCCAAGGAGCAAAGACTTCACGCTGATCTGTTCA
AGGTGACCCACCAGAAGGTGGTTGATGCCATCAGGGCAAACATAACTAATCAGACCTCATATGATGTAAGATGTAATTGT
ATTATCTTGATTGGTTAGGATGTTGATTTCTTTTTCAGTTTTGCTAAAGCACATTTAGATGTGCCCAAGTATTTGCACAT
CTAAGTCATACCATTGATTTTACATGAAAATTTGTGCATACATTTTCTTTGTCTTTTTCCTTTTTCTTTGCAGTGTGATT
TGGTCACTTACATGTGCAATAACTTGGGCACTAGACAAACCCTTTCTTTTTCCTGATCAGTTTTTTATTTAGTGTTCTTC
TCTTTTTCTTACAGCAAATTAAGATTATCCAACTCAGCTGCGAGCCGACAGATGAAGAATTGTTGATGTTTTATGCGGAG
GTCCATAATCACCTATTGGAGGTGGCTTCCCTTTCTATCAACAAGAACGTTGATTTCTTTGCGCCAGAGGAGGGATTCGC
GGAAGGCTTTGTTCCTGAGATTGCAGAAGGACTACCAGTTTTAAGGCCTCAAACTAAGGTACATTCCCCTTTTTCTGCCA
AGCATCATGGGTCTGCCTTTCTCTGCCTATCACCTTTCCATCATGGTTTGAGATGAATCACAAGTGATCTTGATTACATA
TGCATTCAATTGTAGTTCAATAAAAGTAATTTTTACAATGCTTTTGAACAGTTTTTAACTTTCTTGCAAATGATTTGGTT
TTAATGGAAGTTTTGTCTTTGTGT-GCAGAATATATCATATTTCATTGTCGAGTTTGTTGGTGGTCCTGGAGAACCACGC
CTGCAATTTGCTGTTCGCCATGACAATCTGTACTGTGTCGGTTTCCGGGTGTTGTCTGCCAATGATAACGCAAAAACCAA
AGATTGGTCCTCTTTTGGTGATGTTAACCTTTTGAAGTGTGCTGCATTTCCTAATGTTGAGGCATCTAGATTGTCAGAGA
GCTATAAATCTTCGTAAGTTTGTGCTTGTCCTG------------------TAATTCCTTATTTGAACAAAGTTTGGAGC
AATTGTCATGTTTATAGATTT-TGCTTTAGTTGTTAATAAATTTTGCACTTGTTTCATTTTTCAGCAAATCAGTGCGAAT
ATACCCCATGGTTTTCCGACGAATATATATGTACTTCTCCAAATACACTTGCAATTCTGCTGTAGCTGTTGGGGAATTGT
TAAAAGACACATTGTTTGTTGTTATCTGTGAGGCAAGTCGCTTTGGGTTTGTCCAAAGGTTGACTTTTCAAGGAATGCAT
GCTTTCGAAGTTCCGGTTGGACTCACTGATTTGATGGATAATATTATTCATGATTACAAGGATTTGTCATTAGGGGCACT
GTTGATATATCTGTATGACCTAGAAGAGAAATTGAGCGTGGCTGAGAGATCACGCTACCAAACTGAAGATCAACTAGCAG
CTGCACTAGTTGGATTCAACAGTTACGCTCTGCATGTGAATCTCAGGGGATCTGATGGTCTTTATGCTCCGATGTTCGAT
AGTGAGGTTGTTAGGCTTATCCATATGAGGCTTCGGAACTTTGACAAAAATATCCGCAAGTAAGTCCCGTCCCTCTCTGT
TGTATGTCCTTTGCATTTCTAAGTTGGTTGTTCTAATCTGCTGTCTACGTGCAGATTGACTGATGTTTCTTATTGATTGC
TGCTGATTTGCTGAGAAATGGCTCCTGATGATGATTCAATCTTTATTCCAAGTTATCCATATGAGGCTTTTGAAGTTTAA
TCTCTGGTGCTGTGTTGTCCCTCCCTCATATCAATTGCTTTGAAATGGCTCCTTATGATGATTCAATCTTGATGATGGCC
TCTGCTTCTTGATGGCCGTTTTCTATGATGTCCCTGCTTCTTCCTGATGGTAGCCCATGTGATTTTGGCTGCTGTAGATG
ACACTGGCCTTGTTATTTGTTCATTTTGTCCTTTCTCAGACAGTGGCTTTGCCGTTTTTGAGCTTGTGGCTGATAC
>chr2B_1764
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---ATGGAAGTTTTTTCCTCTCGGGGCAGAATGTGTCATATTTGTTGTT-GAGTTAGTTGGTGGTCCTGGAGAACCTCGG
CTGCAATTTGCTATTAGGCATAATAATCTCTACAGTGTTGGTTTTCGGGTGTTGTTTGACTTTGATGGCATAAAAATCAA
AGCTTGGTTCTCTTTTGGTGATATTGACCTTTTGAAGTGTGGTGCATTTCCCAATGTTGAGGCATCTGGAATATTGGAGA
GCCACAAATCTTTGTAAGTTTGTACTTGATCTGGATTTTGCAATTGTCCTTTAATTCCTTATTTGAACAAAGTTTGTAAC
AATTGTCATGTTTGTAAATTTGTGCTATAGTTGTTAATAAATTTTGCACTTGTTTCATTTCTCAGCACATCAGTGAAAAT
ATACCCCAAGGTTTTCCGACCAATATATATGTACTTCTCCAAATACAATCTCAGTTCCAATGTAGCGGTTGGAGAATTGT
TTAAAGACAACTTCTTCGTCATTGCCTGTGAGGGGGGTCGCTTTGGGTTTGTCCAAAGATTGACTTTTCAAGGGATGCAT
GCTTATGAAGTTCCCGTTGGACTCACTTCTTTGATGGATGCTATCATTAATCATTACAAGGATTTATTATTAGGGACATT
GTTGATATTGCTGTTTGAGCTAGAAGAGAAATCGAGCATGGCTGAGAGAGCACGCTACAAGACTGAAGGTCAACTAACTG
CTGCACTAGTTGGATTCCATCGTTACGCTCCAAATGTGAATCCCAGGGGA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-----------S--S-SSS-S--------S-S--------SS-SS-S-----S--------------------S--S
------------S--S-S---S-S-----S---S----S-----S----------S--S-SS----SS-SS-----S---
--S-----S-------------S--S---------------S---------S---------------S--S-S-SS----
--S-S-------S----------S----SS----------------------------------------------S-S-
-------------S--S---------S---------------------------------S------S-------SS---
--------S-----------S--------------------------S-SS--S---SSS------S-----S-------
-S-------SS--S--S--SS--SS--------SSS----------------------S--------------S------
----SS--------S------------SS----------SS---S---S--S-------------S-S-------S--S-
--------SS----S---S-------------S----S-----------S--------S-S-------S-------S-S-
-----------------S-SS---------SSS---------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_554
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TCTCTCTCTTTCGGGGGAGG------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>reverse_2326
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CGAAGTTCCGGTTGGACTCA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
