>input_sequence_63041
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----------------------------------------ATGAACGGGGATGCAGGTGTCAACTTG------CCCATGC
ATCGTCATAACCACCCACGGTCTACTAC---CAGGTCGCACGATCGG---GCAGCAACTGAACCAACCAACCAACCAACC
GCTTGCCTCTTCCACCCCACGACTCTTCTCCTTCTCCATCTTTACTCACTCCGTCGTCGACTCTTTCGTCGCCGTCGCCT
CCGCCTCATATATTACCCGCTGCGTGCCGTCTGCCCTCACATTCACACACACTCGCCCGCGGACAAGCCAACTCTTGCGC
TCCCCCCTCCCACAGCAGGCCAGCACTGCGGCAGCGCCAAGAGCCAGCGTCCGTCCATGGCGCCTCTGCTCCTGCTCTTC
CTCCTCGGCGGCCTCTGCGCCCTCTTCTCCCTCGCCTCCTCCTCCTCGCGCGGCGCCAAGAAGTGCTGCGACGCCGACGG
CGAGAAGGCCAAGAGCC---ACAACCGCGGGGAGCAGGGAGAGAAGGCCAGCGGCAAGGTGGAGGAGAGGG---------
CGGCGCCGGCGGACCGGGAGGCGGACCTGGGGATCGTGTTCTCCACGTTCGACCACGACGGCGACGGCTTCATCACGGCG
GGCGAGCTGGAGGAGTCGCTGAAGCGGCTGGGCATCGCGGTCTCCGCCGCCGAGGCCGCCGCCATGGTGGCGCGCGTCGA
CGCCAACAGCGACGGCCTCATCGACATCCACGAGTTCCGCGAGCTCTACGACTCCATCCCCAAGAAGCGCAAGGCCTCGC
TCCTGCCCCCCTCCGCCGGCGCCGAGGCCGGGGCT------GAGGAGGAGGAGGAGGACGAGGAGGGGGAGGAGATGGAC
CTCAAGGAGGCGTTCGACGTGTTCGACGGCAACAAGGACGGCCTCATCTCCGCCGAGGAGCTGGGCACCGTGCTGGGCTC
CCTCGGCCTGCGCGGCCGCCCCGCCGCCGCCGAGTGCCGCGACATGATACGCCTCGTCGACAGCGACGGCGACGGCATGG
TCAACTTCGAGGAGTTCAAGCGCATGATGGCCGTCGTCAAGGCCTAG---------------------------------
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>chr7A_1_TraesCS7A01G133200
CGGTCCGCTCACGCTTCTCCCCACTTAGAAGGTGACCTGCTTCCCTCTTCTGTCCATCACCAAAACGGGTTTCTCCTCAC
CTTTGACGTCTACTTTAGAGGTAGAGGGAGGTGGGCTCAGCCCACATGGTTTATCAGTCTAGGCCTAGGTTTGTGTCACC
TCCAGTGTTTTTGGATGGAGAGACTCGTTTGGAATAAAATCTCCTCGGTCTTGGCTCCACCGCCGCCATGCCTTTGAGCG
GTGAGCCAAGACAACTCGCGGGCTATCTTCCAACCCTCCATTAGGGCGGTCATTTGGTGTCTTCAGCAAGACGACAACAT
TGGTCAGGGTTTTTGTTTTTCGGCATGGGCCTACTTCAATTGTGACCGATCCAACCCTGTTCACAAGCGCTAGAGAGGAT
GTACAATGGTCAAGTCGGTTGTGGTCATTTTGGATAACACCACCGATGATGGTCAACTGTCGGATCCTTCACCACTCTGC
CATCAGCTTCTCATCTGAGACGCTAGTCCTCGATCGTAGCCTCGATTACTTCCCGACCGCATGCAACAAAGTCAGGCTTG
CTCCGACGGTGGAGCAGCAGCAACAACGTGTCATCGGCTCGTTCTGGCGTGAAAGATTATCGTCTCCACATGAGTATAGA
TATAATTTATTGCTTTTCCAAGGGTGTCGTGTAATGGATCAGGTGGCCTTTTTGACAAAGAAAAAGGACCCCGGTAAGTG
CCACACGTGTGGCACGAGCACATGGCAACTCCGAACGTTTTTATAGCAAGTTTAGTTATGCGAGGATGTCAACTTTAGTT
GTCAAAACATGACAATTTTTTTCCGGATGTCAAGTTTCAGCTTTTTTGGCTTTGTTTTTTTCTTTTCGACCGACATCTAT
AGTTGTGAAGAACGTCAGGGCCGGATTGCTTCGTGCCACCACGCATGTGGCACTCATCATTTGGGAAGAAAAAATATCTC
TCTTATTTTTTGGTGGGAGGCGTGGATAGTAATACGAGAAATGAACGGGGATGCAGGTGTCAACTTG------CCCATGC
ATCGTCATAACCACCCACGGTCTACTAC---CAGGTCGCACGATCGG---GCAGCAACTGAACCAACCAACCAACCAACC
GCTTGCCTCTTCCACCCCACGACTCTTCTCCTTCTCCATCTTTACTCACTCCGTCGTCGACTCTTTCGTCGCCGTCGCCT
CCGCCTCATATATTACCCGCTGCGTGCCGTCTGCCCTCACATTCACACACACTCGCCCGCGGACAAGCCAACTCTTGCGC
TCCCCCCTCCCACAGCAGGCCAGCACTGCGGCAGCGCCAAGAGCCAGCGTCCGTCCATGGCGCCTCTGCTCCTGCTCTTC
CTCCTCGGCGGCCTCTGCGCCCTCTTCTCCCTCGCCTCCTCCTCCTCGCGCGGCGCCAAGAAGTGCTGCGACGCCGACGG
CGAGAAGGCCAAGAGCC---ACAACCGCGGGGAGCAGGGAGAGAAGGCCAGCGGCAAGGTGGAGGAGAGGG---------
CGGCGCCGGCGGACCGGGAGGCGGACCTGGGGATCGTGTTCTCCACGTTCGACCACGACGGCGACGGCTTCATCACGGCG
GGCGAGCTGGAGGAGTCGCTGAAGCGGCTGGGCATCGCGGTCTCCGCCGCCGAGGCCGCCGCCATGGTGGCGCGCGTCGA
CGCCAACAGCGACGGCCTCATCGACATCCACGAGTTCCGCGAGCTCTACGACTCCATCCCCAAGAAGCGCAAGGCCTCGC
TCCTGCCCCCCTCCGCCGGCGCCGAGGCCGGGGCT------GAGGAGGAGGAGGAGGACGAGGAGGGGGAGGAGATGGAC
CTCAAGGAGGCGTTCGACGTGTTCGACGGCAACAAGGACGGCCTCATCTCCGCCGAGGAGCTGGGCACCGTGCTGGGCTC
CCTCGGCCTGCGCGGCCGCCCCGCCGCCGCCGAGTGCCGCGACATGATACGCCTCGTCGACAGCGACGGCGACGGCATGG
TCAACTTCGAGGAGTTCAAGCGCATGATGGCCGTCGTCAAGGCCTAGCCCCGCCCCCACCTCCACTCCACCCTCCTATTC
TCC-----------------------------------------------------------------------------
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----------------------------------------------------------------------CCTCCCTTCC
CCCAGAGATCAAAATTTTTGTTCTTGGATTCTGCGAATCCGAGCGACGTTGTTGGTGATCTGCTCTGCTCTTGGACTGGA
TCCGAAGATCAGGCGACGAAGAACCCACTAATAAACCAGTTTATTACGGGAGAGGGGGCTGGCCGGAAGCTAAATCAGCT
TCCCGCTCCGGCCGTGTGTTCTCCCCTCCCCTGTTCTTGCTGATCAGCTTCGTTTCTCTTCTCCTCTCCTCTGCTGTGTT
ACTGAC-AAGTACTCTATCAAGTATGCATGTAAATATTATTTCTTGGTCGGCTGGTGAAAATG-AAGATCTCAAATGCAT
AAGAATTAAGAATTGCTCTGTTCCCGTGCTTGTTTAAT------------------------------------------
-------------------------------TATGTGCCATTTTTTTGGAGC----CAAACTTTCAGAGCTTTAGCCATG
GACACTTGTCCATGAAGAAAGCCAGAAAGAAAGTAC----CTGTCTTTGT---------------GGACAAGGTAGGTAT
TTTGCCATCTTACGCTGTCAAAAGCAAATTTTACATCTGGAGACTGAGT-TGTGTGTATAGACTTTTGTACCATTTGCTC
TTGTC---TTTGAACAAATCGATGTGCACATACGCAGTTGAGTGGGTCTTTAGGCGTGCCATTTTTACCCGGTCAGAGTC
TTAGGGAAAGAAATAATTCACTAGCGCTAACCTGAGAGAAATCAAAGAACAACAAAATCCT-------------------
-----------------GAGATGTAGGCCTGTACTTTGTTCTTACTCTGAAGAACGTCTTGACCGGAGAAAATCCCATCA
AAATAGCCACCTGCGTGTGAAAACATCGGCCGTTTTTCTCCTCCTCATCGTACTCT--------GAGTGCAAACTCATCG
TCACTAGTCTGCAAAACTGCCGTTGAAGCAAGC---ACTGGTATCCACAACGGTCTGAAGAACCAGTG-TAAACTGACCG
ATCCTCTTCAGAAAGCTACGCCATGCCTTATCTCATTCTCATGTTAGCGAGACCCGTTAAAACT
>chr7D_962
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-CTTGTTCTTTGGTGTGAGGGGTGGAAAATAATACAAGAAATGTGCGGGGATGCAGGTGTGAACTTGCCATGCCCCATGC
ATCGTCTGAACCACCCACGATCTACTACTACCAGGTCGCACGATCGGGCAGCAGCAACTGAACCAACCAACCAACC----
GCCGCCCTCTTCCACCCCACGACTCTTCTTCTTCCCCTTCTTTACTCACCCCGCCGTCGACTCTT-------CGTCGCCG
TCGCCTCATATATTAGCCGCTGCGTGCCGTCTGCCTTCACATTCACACACACTCGCCCGCGGACAAGCCAACTCTTGCGC
TCCCA-CCTCCACAGCAGCTCAGCA--GCAGCAGCGCAAAGAGCCAGCGTCCATCCATGGCGCCCCTGCTCCTGCTCTTC
CTCCTCGGCGGCCTCTGCGCCCTCTTCTCCCTCGCCTCCTCCTCCTCGCGCGGCGCCAAGAAGTGCTGCGACGTCGACGG
CGAGAAGGCCAAGAGTC---ACCAC---GGGGAGCAAGAAGCCAAGGCCAGCAAGGCGGTGGAGGAGAGGGAGGCGCGGC
CGGCGCCGGCGGACCGGGAGGCGGACCTGGGGATCGTGTTCTCCACGTTCGACCACGACGGCGACGGCTTCATCACGGCG
GGCGAGCTGGAGGAGTCGCTGAAGCGGCTGGGCATCGCCGTGTCCGCCGCCGAGGCCGCCGCCATGGTGGCCCGCGTCGA
CGCCAACAGCGACGGCCTCATCGACATCCACGAGTTCCGCGAGCTCTACGACTCCATCCCCAAGAAGCGCAAGGCCTCGC
TGCTCCCCGCCTCCGCCGGCGCGGCCGACGGGGCC---------GAGGAGGAGGAGGACGAGGAGGGGGAGGAGATGGAC
CTCAAGGAGGCGTTCGACGTGTTCGACGGCAACAAGGACGGGCTCATCTCCGCCGAGGAGCTGGGCACCGTGCTGGGCTC
CCTCGGCCTGCGCGGCCGCCCCGCCGCCGCCGAGTGCCGCGACATGATCCGCCTCGTCGACGCCGACGGCGACGGCATGG
TCAACTTCGAGGAGTTCAAGCGCATGATGGCCGTCGTCAAGGCTTAGCCCCACCTCCACCTCCACTCCATCCTCCTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCT-----T
CCCAGAGATCAGAATTTTTGTTCTTGGATTCTGCGAGTCCGAGGGACGTTGTTGGTGATCTGCTCTGCTCTTGGACTGGA
TCCGAAGATCGGACGGCGAAGAACCCACTAATCAACCGGTTTATTACGGGAGAGGGGGCTGGCCGGAAGCTAAATCAGCT
TCCCGCTCCGTCCGTGTGTTCTCCCCTCCCCTGTTCTTGCTGATCAACTTGGT-----TTCTCTTCTCCTCTGCTATGTT
ACTGACAAAGTACTCTATCAAGTATGCATGTAAATATTATTTCTTGGTCGGCTGGTGAAAATG-AAGAACTCACTCCATG
C----TTAAGAATCGCTCTGTTGCTGTGCTTGTGAATTGTTCAATGCTTGGTTAGA------------------------
-------------------------------TATGTGCCATTTTTTCGGGATCAAACAAACTTTCAGAGCTTTAGCCATG
GACACTTGTCCATTAAGAAAGCCAGCAAGAAAGTAC----CAACTGCCTTTGTGTACAAGTACAAGTACAAGGTAGGTAT
TTTGCCATCTTACGCTGTCAAAAGAAAAATTTACATCTGGAGACTGAGTATGTCT--ATGGACTTTTGTACCGTGTGTTC
TAGTAGTTTTTGAAGAAATCAACGTGCACATACGCAGTTGAGTGGGTCTTTCGGCGTGCCATTTTTACCCGGTCAGAGTC
GCAGGGAAAGAACAAATTCACCAGCACCAACCTGACAAAAATCGAAGTAGAACAAAATATT-------------------
-----------------GAGATGTAGGCCTGTGCTTTGTTCTTACTCTGAAGAAAATCTTGACCGGAGAAAATCCCATCA
AAATAACCACCTATATGTGAAAACATCGGCCGTTTTTCTCCTCATCATAGTACTCT--------GAGTGCAAACTCATCG
TCACCAGTCTGCAAAACTGCCGTTGAAGGAAGTACTACTAGTATCTACAACGGTCTGAAAAGCCAGTG-TAAACTGAGTG
ATCCTCTTCAGAAAGCTACGCCATGCCTTGTCTCATTCTGATGTTAGTGAGACCCGTTAAAA--
>chr7B_1025
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----------------------------------------------------------------TTG------CCCAGGT
TTAGTCTGAACCACCCACGATCTACTACTACCAAGTCGCACGATCGG---GCAGCAACTGAACCAACCAACCAACC----
GCTGCCCTCTTCCACTCCACGACTCTTCTTCTTCCCCTTCTTTACTCACTCCGTCGTCGAC---------GCCGTCGCCT
CCGCCTCATATATTAGCCGCTGCGTGTCGTCTGCCTTCACATTCACACACACTCGCCCGCGGACAAACCAACACGCGCGC
TCCCT-CTCCCACGGCAGGCCAGCACTGCAGCAGCGCGAAGAGCCAGCGT-CGTCCATGGCGCCTCTGCTCCTGCTCTTC
CTCCTCGGCGGCCTCTGCGCCCTCTTCTCCCTCGCCTCCTCCTCCTCGCGCGGCGCCAAGAAGTGCTGCGACGTCGACGG
CGAGAAGTCCAAGAGTAACAACCAC---GGCGAGCAAGAAGCCAAGGCCAGCAAGGCGG---AGGAGAGGGAGGAGCGGC
CGGCGCCGGCGGACCGGGAGGCAGACCTGGGGATCGTGTTCTCGACGTTCGACCACGACGGCGACGGCTTCATCACGGCG
GGGGAGCTGGAGGAGTCGCTGAAGCGGCTGGGCATCGCCGTGTCCGCCGCCGAGGCGGCCGCCATGGTGGCCCGCGTCGA
CGCCAACAGCGACGGCCTCATCGACATCCACGAGTTCCGCGAGCTCTACGACTCCATCCCCAAGAAGCGCAAGGCCTCGC
TGCTCCCCGCCTCCGCCGGCGCGGCCGACGGGGCCGAGGGGGAGGAGGAGGACGACGACGAGGAGGGGGAGGAGATGGAC
CTCAAGGAGGCGTTCGACGTGTTCGACGGCAACAAGGACGGGCTCATCTCCGCCGAGGAGCTGGGCACCGTGCTGGGCTC
CCTCGGCCTGCGCGGCCGCCCCGCCGCCGCCGAGTGCCGCGACATGATACGCCTCGTCGACAGCGACGGCGACGGCATGG
TCAGCTTCGAGGAGTTCAAGCGCATGATGGCCGTCGTCAAGGCCTAGCCCCACCCCCAC------TCCACCTTCTTCTTC
TCT-----------------------------------------------------------------------------
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----------------------------------------------------------------------CCCT-----C
CCCAGAGATCGAATTTTTTGTTCTTGGATTCTGCGAGTCCGAGCGACGTTGTTGGTGATCTGCTCTC-----GGACTGGA
TCCGAAGATCAGACGACGAAGAACCCACTAATCAACCAGTTTATTACGGGAGAGGGGGCTGGCCGGAAGCTAAATCAGCT
TCCCGCTCCGGCCGTGTGTTCTCCCCTCCCCTGTTCTTGCTGATCAACTTGGT-----TTCTCATCTCCTCTGCTGTGTT
ACTGACAAGC-ACTCTATCAAGTATGCATGTAAATATTATTTCTTGGTCGGCTGGTGAAAAATTAAGATCTCACTCAATG
C----ATAAGGATTGCTCTGCTGCTGTGCTTGTGAAATGATCAGTGTTTCTTTGCACTTGTTAATTACTCACTAGTGTAA
AAAACGCTCTTATATTATGGGACGAAGGAAGTATGTGCCAATTTTTTGGGAC----CAAACTTTCAGAGCTTTAGCCATG
GACACTTGTCCATGAAGAAAGCCAGAGAGAAAGTACCTATCTGCCTTTGT---------------GTACAAGGTAGGTAT
TTTGCCATCTTACGCTGTCAAAAGGAAAAATTACATCTGGAGACTGAGT-TGTGT--ACAGACTTTTGTACCATGCGTTC
TTGTCTTTT--GAACAAATCAATGTGCACATACGTAGTTGAGTGGGTCTTTGGGCGTGCCATTTTTACCCGGTCAGAGTC
GCAGGGAAAGAACAAATTCACCAGCGCTAACCTGAGAAAAATCAAAGTAGAAGAAAATCTTGAGATGTAGGCCCATTTTT
TCGAGAATGGACTTTTCGAGATGTAGGCCTGTACTTTGTTCTTACTCTGAAGAACGTCTTGACCGGAGAAAATCACATCA
AAATAACCACCTGCGTGTGAAAACACCGGCCGTTTTTGTCATCATCATAGTAGTCTGAGACTCTGAGTACAAACTCATCG
TCACTGGTCTGCAAAACTGCCGTTGAAGCAAGC---ACCAGTATCCACAACGGTCTGAAAAGCCAGTTTTAAACTGAGTG
ATCCTCTTCAGAGAGGCCCGTCTCGTCTTGTCTCATTCTGATGTTAGCGAGACCCGTTAAAACT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S---S--S-------S----S-----S-S------S-------SS---------------S-------------------
------SS-----------S--------------------------------------------------------SSSS
---SS------------------------S----S--S---------------------------SSSSS----------
---------------S-------------------S--------------------------------------------
----SS-----------------------S-------S------------------------------------------
-------------------------------------------------------------------------S------
---------------S------S--SSS--------S-S--SS---------SSSSS-----------------------
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--------------------------------------S--S-----------------------------S--------
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-S--S---S-------------S-SS-S------S---------------------------------------------
-----------------------------------------S--------------------------------------
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---------------------------------------------------S------------------------S---
--S-----------------------------------------------------------------------------
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------------------------------------------------------------------------SSSSSSS-
------------------------------------S-------------------------------------------
------------S-------------------S-----------------------------------------------
----------------------------------------------S---S--SSSSS-----S----------------
-------------------------------------------------------------------------SSSSSSS
SSSSS-----------------S-S--------SS---------------------------------------------
-------------------------------------------------SS-----------------------------
-------------------------------------------S----------------------S-------------
------------------------S---S--------------------------SS-----------------S--S--
--------------------S------------------------------S----------------------------
SS----------SS-------S---------------S---------S-S---------S--------------------
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-----S-------------------------------------S----S-------------------------------
---------------------------------------S-------------------S-S---------------SS-
-----------------------------S---------S------------------------
>forward_539
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---------------------------------------CCTCGATTACTTCCCGACCG---------------------
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>reverse_2313
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------------------------------------------------------------------------TCCCTTCC
CCCAGAGATCAA--------------------------------------------------------------------
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