>input_sequence_63030
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----------------------------------------------------ATGGGCAAGAAAGGTGCCCTCACCTCCA
TCTTCTCCAGGTCCTCCAGCCTCGCTAGCGACTCGTCCACGGCGGCCGTGATACCCTGGCCGTGGCCATCCTGCCGGGAC
CCGCAGACCGACTCCTTCCGTGCCGCCGAGGAGCCCTGCGCCACGGCTGCTGGTGGCAGCAGGTGCGGCCCTGTCGCCGC
GAGGCACCGCAAGCTGGTGGGTGCCCCCGCCGAGATGTACAAGACGGTCAACTCGGTCTACATCGACCCCGACGACGGCG
AGTCATTCTCTTGCCTTAGCGC---GGAGGAGGAGGAAACGGTTGTGGTGGAGGACGACGGCTTCTCGACGCCCGAG---
---GATGAGTGGTCGGAGGCTGTGATCCGCAGCCTCAGCCGGACGACCTCGTCCACCGGTCGCTTCTTCTTCGACCAGGG
GCCAGCGACCAACTCCATCCTGTCCGCGGCGGCGGCCTCGACAACCGGCAGTACACCACC--------------------
----------------------------------GGAGGAGGAGAACGACAAGCCGGCGGCGCTGTCCAAGAACGGGAAG
CCAGGAGATGGTGGCAAGTCGCTGGTGGTGGAGGAGAGCGTGGCGGTGCCAATGGACTCGGCGGACCCGTACGGCGACTT
CCTGTCGTCCATGGAGGAGATGGTGGCCGCGCACGAGCTGCGCGGCTGGGACGCGCTGGAGGAGCTGCTGGTATGGTACC
TGCGGGTGAACGCCAAGCACCACCACCCGCTCATCGTCAGCGCCTTCGTCGACCTGCTCGTCCGCCTCACCACCAGCGCC
ACGGCAAGCACCTCGACGACGACAATGACGATGACGTCGAGTAGTAGCACCAGCAGCTCGAGCAGCGGCACGAGCAGCAC
GAGTACTACTAGTAGCAGCACGAGCACGAGTACTGGTGGCGATGGTGTGGTTGTTAGTGCTACATCAGCAACGGGACAAT
GCGACGGCGGGAATGAAGCTTCTGCGTCTTGCTCGTCGTCTTCTTCGTGCGCCCCGCGTGACGACGACGAGGCCAGTCGT
GGGGAAGACTAG--------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G126300
TCGAGTTTGTGTAAATTATTTTGGAATCCATGAATTTTTATTT-AAAAAACCGCGGACATGTTTATAGTGATTTTTTTTT
AAATAAAACCGGTGGGTGGTTCACGTAGAAGGATACGTTTCCCCAAAGGACAACATGGGGTTTCGTCATGTTTCGCTGTA
TGTGCTTTACACATTTGGACGGATAGAAAGTGCCACATTTTCACTGGAGCCTAAGTTAGCACCTATAGGTGCTTTTTTTT
TGCTGGAAATGCTTTCGATTTATTTATATTTAATCATGATAGTACAACGAACACTAGAAATAATAAAAATTAAATTCAGA
ATTAGCCTCCGTTGTTGCTTTGTACATAGCCATTACCTTTACATTGGATACGTTTATGGCGTATTCACTTTTTTGTTTTT
CTTTAATCT---TAAAACGGCAGTGGTCCCCCA--CTCCTATGAAACAGGAACTCGTTTTCACCGCATACAAGTGGTGCC
AAAGTGCTGAAACGTGCGTCTCAAAAAAGAAGTGCTGAAACGTGTGATATCTGAGCCAGAGACGTCTAATCTTCTC----
--------------------------------------------------------TCAGATTAGTTGCTCTGTAAGTAT
GTTTAGTGCTGAAGATTTTTTTATTTTTTTTGCATGTATAGCTCTGAAGGATTTGGAAAGACATCTTTGCGTTGCATCGC
ACTCAGGTACTGGGATTCTCTAACTTAGGTCACTGACATGACGGTCCTTTAACAAACTGGCCCACATACCAGTGACCCGA
AGTTACGTGACTGCAGAGCAAGCTGCAGTAATCTGCTCTGCTCTCTCAGACTCTCAGTCTCTCTACTTACTCTGCACACA
GAATACATAAATAGTAGTACTGTCCATGTGTTCTTCCC-TCTCTTCGTTAATTGCACACCTCTCTCTTCTTCTTCTTCT-
--------CTCCGCAACTACTTCCTTCGTCTACT---CGATCTCGCTTCTG-AGCAGGCACGGCGGTCTCGAGTCGATCG
AGCTCATCCAC------------TGCATTGTTCGCTCCATCCGGCTGATCCGATGGGCAAGAAAGGTGCCCTCACCTCCA
TCTTCTCCAGGTCCTCCAGCCTCGCTAGCGACTCGTCCACGGCGGCCGTGATACCCTGGCCGTGGCCATCCTGCCGGGAC
CCGCAGACCGACTCCTTCCGTGCCGCCGAGGAGCCCTGCGCCACGGCTGCTGGTGGCAGCAGGTGCGGCCCTGTCGCCGC
GAGGCACCGCAAGCTGGTGGGTGCCCCCGCCGAGATGTACAAGACGGTCAACTCGGTCTACATCGACCCCGACGACGGCG
AGTCATTCTCTTGCCTTAGCGC---GGAGGAGGAGGAAACGGTTGTGGTGGAGGACGACGGCTTCTCGACGCCCGAG---
---GATGAGTGGTCGGAGGCTGTGATCCGCAGCCTCAGCCGGACGACCTCGTCCACCGGTCGCTTCTTCTTCGACCAGGG
GCCAGCGACCAACTCCATCCTGTCCGCGGCGGCGGCCTCGACAACCGGCAGTACACCACC--------------------
----------------------------------GGAGGAGGAGAACGACAAGCCGGCGGCGCTGTCCAAGAACGGGAAG
CCAGGAGATGGTGGCAAGTCGCTGGTGGTGGAGGAGAGCGTGGCGGTGCCAATGGACTCGGCGGACCCGTACGGCGACTT
CCTGTCGTCCATGGAGGAGATGGTGGCCGCGCACGAGCTGCGCGGCTGGGACGCGCTGGAGGAGCTGCTGGTATGGTACC
TGCGGGTGAACGCCAAGCACCACCACCCGCTCATCGTCAGCGCCTTCGTCGACCTGCTCGTCCGCCTCACCACCAGCGCC
ACGGCAAGCACCTCGACGACGACAATGACGATGACGTCGAGTAGTAGCACCAGCAGCTCGAGCAGCGGCACGAGCAGCAC
GAGTACTACTAGTAGCAGCACGAGCACGAGTACTGGTGGCGATGGTGTGGTTGTTAGTGCTACATCAGCAACGGGACAAT
GCGACGGCGGGAATGAAGCTTCTGCGTCTTGCTCGTCGTCTTCTTCGTGCGCCCCGCGTGACGACGACGAGGCCAGTCGT
GGGGAAGACTAGCCACTCGACTAATCATAGATTAGAC-GACAATCGGCAAGTA---ATCTGCATGCATGTGATTTTGGCT
TTTGG--TCCGGGCTAATC-------AAGCAACTAACAAGTTTTTCTTTCTTTT-GTGGCGGGGAAGCAACCGAGCTGTT
CATTGATGCACTCGTGCTTGGGTTCGTATGCACTTTTCTTTTCTTGATTGATTAACGATCCCATGAGTCGCTGGGTTAAG
AAAAC--AC--TAATTTGGAGCGAGCACATGCCAAACCGGTCACCGACATGAGCTGGTTTCGCCGATCTCGATGACACCA
ACTAGCAATGCATAATGGCTTGCGTGCACAGTGCTGAACAGTACATGGAAAGCCATGATTTCTGCGAGAAACCGAC-GCT
AGCCAGCGACCACCATGACGAGTCATACTCGTCGTCGA--------------GAGCGATGCTCGGGTTCAATGCGACCAG
GGAACAGTGTTTTCCCCCCTCCTCGGTTGCCCCTTCATCAATGCATGCGTGCGTGTACACAAGCTGCACGCCGCAGAACT
GGACCTTCAGAGCAAGTATATTACTTCCTCCGTTATAAAATAGATGACCCAAATTTATACTAATTTTATACTAAAGTTAG
TATAAAATTGAGTCATCTATTTAGGAACGAAGGGAGTAATAGTAAGCTTCATGAAGACTTT--TTTTTAAATTGAAAATA
CATTTTCAAGACTTCAA-TAAAAGTCTGAAAAGAACATACACGGGTAAGGCGGACGCCTACAACAAACATTATAATTATC
CACGGATGTGTTTACGGACAGTGATACGAAAGCCGGAATTCCAAGCCCATCTGTATACATTTCAAGTGGAATTTGAACAA
ACTGAACGGTTTTCATGCAAACCGGATGATTTTCATTTAAACCATGCGGTATTCATTACATTTTTGACATATTTTGTTAA
ACAAAAGCAGTTGGACCCTAACATGGTCTAAATATTCGTCAGCACCCATCCTTCAAGTCCTTGTTGTTTTCTTCCGTGTT
CATGTCTG
>chr5B_3
--GAGTTTGTGTGAATTATTTTGGAACCCACGATTTTTTATTAAAAAAAATTGCGGACATGTTTATGGTGATTTTTTTTT
AT-TAAAACCGGTGAGTGGTTCACGTAGAAGGATACATCTCCCCAAAGGACAACATGGGGTTTCGTCTTGTTTTGCTGTA
TGTGCTTTACACATTTGGAAGGATAGAAACTGCCACATTTTCACTGGAGCCTAAGTAGCACTTAGAGGGGGCTTTCCCCG
CCAGAACTAGGTTCTCATCTTGATGTGGGTA-------------------------------------------------
--------CCGTTGTGATTTTGTACATAGCCATTACCTTTACATTGGATACGTTTATGGCGTATTCACCTTTTTGTTTTT
CTTTAATCT---TAAAAAGGCAGTGGTCCCCCACTCTCCTATAAAACAGGAACTTGTTTTCACCGTATACAAGTGGTGCC
AAAGTGCTGAAACGTGA----------------------------GATATCTAAGCCAGATACATCTAATTTTCTCTTTG
-TTTTTTTTAAATTGTTTGAATTGCTTACCACATGTGTCACGTGGTTAATCTCCTCTCAGATTAGTTACTCGATAAGTAT
GTTTAGTGCTGAAGATATAT--------------------------AAGGATTTGGAAAGGCATC-TTGCGTTGCATCGC
ACTCATGTATTGAGATTCTCTAACTTAAGTCACTGACATGACGATCCTCTAACAAAGTGGCCCACATACCAGTGGCCCGG
AGTTACGTGACTGCAGAGCAAGCTGCAGTCCTCTGCTC-----------------AGTCTCTCTACTTACTCTGCAGTCT
GCACACAG-AA---TAGTACTGTCCATGTGTTCTTCCCCTCT----CTTAATTGCACACCTCTCTCTTCTTCTTCTTCTT
CT------CTCCGCACATACTTCCTTCGACTACT---CTATATCTCGCTCTAAGCAGGCACGGCGGTCTCGAGTCGATCG
AGCTCATCCACCTTCATCTACTCTGCATTGTTCGCTT--------TGATCCGATGGGCAAGAAAGGTGCCCTCACCTCCA
TCTTCTCCAGGTCCTCCAGCCTCGCTAGCGACTCCTCCACGGCGGCCGTGATACCCTGGCCGTGGCCATCCTGCCGGGAC
CCGCAGACCGACTCCTTCCGTGCCGGCGAGGAGCCCTGCGCCACGGCTGCTGATGGCAGCAGGTGCGGCCCTGTCGCCGC
GAGGCACTGCAAGCTGGTGGGTGGCCCCGCCGAGATGTACAAGACGGTCAACTCGGTCTACATCGACCCCGACGACGGCG
AGTCATTCTCTTGCCTCAGCGC---CGAGGAGGAGGAAACGGTTGTAGTGGAGGACGACGGCTTCTTGACGCCCACTGCG
TCCGAGGAGTGGTCAGAGGCTGTGATCCGCAGCCTCAGCCGGACGACCTCGTCCACCGGCCGCTTCTTCTTCGACCAGGG
GCCAGCGACCAACTCCATCCTGTCTGCGGCGGCGGCCTCGACAACCGGCAGTACACCACCGGAGGAGGAGAATGACAAGT
CGGCGGCGGCCTCGACAACCGGCAGTACACCACCGGAGGAGGAGAATGACAAGTCGGCGGCGCTGTCCAAGAACGAGAAG
CCAGGAGATGGTGGCAAGTCGCTGGTGGTGGAGGAGAGCGTGGCGGTGCCAGTGGACTCGGCGGACCCGTACGGGGACTT
CCTGTCGTCCATGGAGGAGATGGTGGTCGCGCACCAGCTGCGCGGCTGGGACGCGCTGGAGGAGCTGCTGGTATGGTACC
TGCGGGTGAACGCCAAGAACCACCACCCACTCATCGTCAGCGCCTTCGTCGACCTGCTCGTCCGCCTCAGCGCCAGCGCC
ACGGCAAACACCTCGACGACGACAAGGACGATGACGTCGAGTAGTAGCACCAGCAGCTCGAGCAGCAGCACGAGCAGCAC
GAGTACTACAAGTAGCAGCACGAGTACGAGTACTGGTGGCGACGGTGTGGTTGTTAGTGCTACATCAGCAACGGGACAAT
GCGACGGCGGGAATGAAGCTTCTGCGTCTTGCTCGTCGTCTTCTTCGTGCGCCCCGCGTGACGACGACGAGGCCAGTCGT
GGGGAAGACTAGTCACTCGACTAATCATAGATTAGACCGACAATCCGCAACTA---ATCTGCATGCATGTGATTTTGGCT
TTTGGATTCCGGGCTAATCAAGCAAGAAGCAACTAACAAGTTTTTCTTTCTTTT-GTGGCGGGGAAGCAACCGAGCTGTT
AATTGATGCACTCGTGCTTGGGTTCGTATGCACTTTTCTT---------GATTGACGATCCCATGAGTCGCTGAGTTAAT
AAAAAGAACTTTAATTTGGAGCGAGCACATGCCAAACCGGTCACCGACGTGATCTTGTTTCGTCGATCTCGATGACACCA
ACTAGCAATGCATAATGGCTTGCGTGCACAGTGCTGAACAGTACATGGAAAGCCATGATTTCTGCGAGAAACCGAC-GCT
AGCCAGCGACCACCATGACGAGTCACACTCGTCGTCGAGAGCGAGAGCAGGCGAGCGATGCTCGCGTTCAATGCGACCAG
GGAGCAGTGTTT-CCCCCCTGCTCGGCTGCTCCTTCATCAATGCATGCGTGCGTGTACACAAGCTGCACGCCGCAGAACT
GGACCT-CAGAGCAAGTATAATAGTAC-----------------------------------------------------
----------------------------------AGTACTACTGAGCTCCATGAAGACCTTTATTTTTATATTGAAAATA
CATTTTCAACACTTCAAACAAAAGTCTGGAAAAAACATACACGGTG-AGGCGGACGCCTACAACAAACACTGTATTTATC
CACGGACGTGTTTACGGACAGTGATACGGAAGCCGGCCACCCAACCCTATCTGTATACATTTTAAGTGGAATTTAAGCAA
ACCGAATAGTTTTCATGCAAACCGGATGATTTTCATTTAAACCAGGCCGTATTCATTACATTCTTGACACATTTTGTTAA
ACAAAAGCAGCCAGACCCTAACATAGTCCAAATATTCGTCAGCGCCCATCCTCCAAGCCCTTGTCGTTTTCTTCCGTGTT
CATG----
>chrUn_328
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--------CCGTTGTGGTTTTGTACATAGCCATTACCTTTACATTGGATACGTTTATGGCGTATTCACCTTTTTGTTTTT
TTAATCTTAATATAAAACGGCGGTGGTCCCCCACTCTTCTATAAAACAGGAACTCGTTTTCACCGTATACAAGTGGTGCC
AAAGTGCTGAAACGT----------------------------GTGATATCTGAGCCAAATATATCTAATTTTCTCTCAG
ATTTTTTTTAAACTGTTTGGATTGCTTATCACATATGTCACGTTGTTTATCTTCTCACAGATTAGTTACTCTATAAGTAT
GTTTAGTGCTGAAGATT-------TTTTTTTTCATGTATAGCTGTGAAGGATTTGGAAAGGGATC-TTGCGTTGCATCGC
ACTCATGTACTGAGATTCTCTAACTTAGGTCACTGACATGACGGTCCTCTAACAAAGTGGCCCACATACCAGTGGCCCGA
AGTTACGTGACTGCAGAGCAAGCTGCAGTCCTCTGCTCTGCTC--------TCTCAGTCTCTCTACTTACTCTGCACACA
GAATACATAAA---TAGTACTGTCCATGTGTTCTTCCCCTCTCTTCCTTAATTGCACACCTCTCTCTTCTTCTTCTTCTT
CTTCTTCTCTCCGCAACTACTTCCTTCGTCTACGGAACGATCTCGCTTCTG-AGCAGGCACGGCTGTCTCGAGTCGATCG
AGCTCATCCAC------------TGCATTGTTCGCTCCATCCGGCTGATCCGATGGGCAAGAAAGGTGCCCTCACCTCCA
TCTTCTCCAGGTCCTCCAGCCTCGCTAGCGACTCCTCCACGCCGGCCGTGATACCCTGGCCGTGGCCATCCTGCCGGGAC
CCGCAGACCGACTCCTTCCGTGCCGCCGAGGAGCCCTGCGCCACGGCTGCTGGTGGCAGCAGGTGCGGCCCTGTCGCCGC
GAGGCACCGCAAGCTGGTGGGTGGCCCCGCCGAGATGTACAAGACGGTCAACTCGGTCTACATCGACCCCGACGACGGCG
AGTCATTCTCTTGCCTCAGCACCGAGGAGGAGGAGGAAACGGTTGTAGTGGAGGACGACGGCTTCTTGACGCCCACTGCG
TCCGAGGAGTGGTCGGAGGCTGTGATCCGCAGCCTCAGCCGGACGACCTCGTCCACCGGCCGCTTCTTCTTCGACCAGGG
GCCAGCGACCAACTCCAACCTGTCTGCGGCGGCGGACTCGACAACCGGCAGTACACCA----------------------
--------------------------------CCGGAGGAGGAGAATGACAAGCCGGCGGCGCTGTCCAAGAAGGAGAAG
CCAGGAGATGGTGGCAAGTCGCTGGTGGTGGAGGAGAGCGTGGCGGTGCCAGTGGAGTCGGCGGACCCGTACGGGGACTT
CCTGTCGTCCATGGAGGAGATGGTGGCCGCGCACCAGCTGCGCGGCTGGGACGCGCTGGAGGAGCTGCTGGTATGGTACC
TACGGGTGAACGCCAAGCACCACCACCCGCTCATCGTCAGCGCCTTCGTCGACCTGCTCGTCCGCCTCACCGCCAGCGCC
ACGGCAAACACCTCGACGACGACAGGGACGATGACGTCGAGTAGTAGCACCAGCAGCTCGAGCAGCAGCACGAGCAGCAC
GAGTACTACTAGTAGCAGCACGAGCACGAGTACTGGTGGCGATGGTGTGGTTGTTAGTGCTACATCAGCAACGGGACAAT
GCGACGGCGGGAATGAAGCTTGTGCGTCTTGCTCGTCGTCTTCTTCGTGCGCCCCGCGTGACGACGACGAGGCCAGTCGT
GGGGAAGACTAGCCACTCCACTAATCATAGATTAGACCGACAATCGGGAACTAGTAATCTGCATGCATGTGATTTTGGCT
TTTGGATTCCGGGCTAATC-------AAGCAACTAAGAAGTTTTTCTTTTTTTTTGTGGCGGGGAAGCAACCGAGCTGTT
CATTGATGCACTCGTGCTT--GTTCGTATGCACTTTTCTTTTCTTGATTGATTAACGATCCCATGAGTCGCTGGGTTAAG
AAAAC--ACTTTAATTTGGAGCGAGCACATGCCAAACCGGTGACCGACGTGATCTGGTTTCGTCGATCTCGATGACACCA
ACTAGCAATGCATAATGGCTTGCGTGCACAGTGCTGAACAGTACATGGAAAGCCATGATTTCTGCGAGAAACCGACCGCT
AGCCAGCGACCACCATGACGAGTCATACTCGTCGTCGA--------------GAGCGATGCTCGGGTTCAATGCGACCAG
GGAGCAGTGTTT-CCCCCCTGCTCGGCTGCTCCTTCATCAATGCATGCGTGCGTGTACACAAGCTGCACGCCGCAGAACT
GGACCT-CAGAGCA--------AGTAT-----------------------------------------------------
----------------------------------AATAATAGTGAGCTCCATGAAGACCTTC-TTTTTTTATTGAAAATA
CATTTTCAACACTTCAAATAAAAGTCTGAAAAAAACATACACGGGTAAGGCGGACGCCTACAACAGACAATGTATTCATC
CACGGATGCGTTCACAGACAGTGATACGGAAGCCGGCCATCCAACCTTGTCTGTATACATTTTAAGTGAAATTTGAACAA
ACCGAATGGTTTTCAGGCAAAACGGATGATTTTCATTTAAATCAGTCCGTATTCATTACATTTTTGACATATTTTGTAAA
ACAAAAGCAGCCGGACCCTAACATAGTCCAAATATTCGTCAGCGCCCATCCTCCAAGTCCTTGTTGTTTTCTTCC-----
--------
>SNPs
SS----------S-------------S---S--S--------S-------SS--------------S-------------
-SS-----------S---------------------S-S----------------------------S-----S------
-------------------S---------S--------------------------SSSSSSSSSSS--S-----SSSSS
SSSSSSSS-S-S-S--SSS--SS-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS-------S-S--------------------------------------------------S-----------
------------------------------------------S----------------------S--------------
----------------SSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S--S------S---------
-------------------------------------------------------------------S----S-------
------------------S-SSSS-------S-----------S----------------S----S--------------
-----S------S-----------------------------------S-------S-----------------S-----
-----------------------------SS------------SSSSSSSS-----------------------------
-----------SSS--------------------------------S---------------------------------
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----------------------------------S---------------------------------------------
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-----------------------S--------------------------------------------------------
----------------S-----------------------------S-------------------S-------SSS---
-----S-----------------------------------------------------S--------------------
------------------------S-------------------------------------------------------
----------------------------------------------S----------------------------S----
---------------------------------------------------S----------------------S-----
----------------------------------S---------------------------------------------
-----------------------------------------------------------------------S--------
-------S-----------------S----------------------------------------S-------------
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--------------------------------------------------S-----------------------------
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------------------------------------------------S---S---------S-----------------
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---S--------S-------S-----S---S-------------------------------------------------
------S-------------S--S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S----S---------S----------S----------
---------S----------------------S------------------------------------S-S--S-----
----------------------------S-------SSS-----S--S--------------S-----------------
--S---S-------------------------------------S--S--------------------------------
----------SS------------S---S--------------S--------S---------------------------
----SSSS
>forward_500
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AAAGTGCTGAAACGTGCGTC------------------------------------------------------------
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>reverse_1500
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-----------------------------------------------------------TCGCTTCTTCTTCGACCAGG-
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>forward_505
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-----GCTGAAACGTGCGTCTCAAA-------------------------------------------------------
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>reverse_2671
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------------------------------CCCTTCATCAATGCATGCGT------------------------------
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