>input_sequence_63008
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---------------------------------------------------------------------------ATGGC
CGCCCCTACCGGCACTTCCATGCTAAGGGCCCTGCTCCAGCTTCCCCTGGCTCCGTTCTCGGGGAAGAGCTCCGCGCCTT
CGGCGGTCCACATGACCGCCCGCCGCGCGCCGACGCCCGTGCTGGCCGCCAAGGGCTACAACGTGCAGATCGTGGTGGAC
GAGAACGAGGGGGAGGACTCCATCTTCCGGCGCTTCCGGCGGGAGGTGATGAAGGCCGGCCTGCTCCAGGAGATCAAGCG
CCGCCGGCGGCACGAGAACACCAAGGACAAGAAGATCCGCAAGGCCCGCGAGGCCGGCCGCCGCAACCGCCGCAGGTAAA
CCTCGCTGCACTTGACGCTGCCTTTCCTCGATGCTGTAGGAAGA---CTTGAGAATCTGAGACGTCCGAGCTTGGTTTCA
TGTCCGACGGTGGAAGGGGCCATTTCTTGGATGTTGGAAGTGGAACAGAAATGTGAAACGAATTCTGCAGGATTTGATTG
ATTTAGATTTTCTTTTTCCGGGGATTGATTTAGAATTTCAT-GGTGTT--------ATAATGAAATGTTCAGACAGACAG
TGTTTGTGGTGAT------GCCAAATAAGTGCAGCATGAGCTTGAACTCGTACAAA-TGTGATAGAAATTTACAGAAATA
AGTTAGCAAAGTTCATTGAGCCGCTGCCTGCAGTGGTGGTAGCAGCACAGTTTTGTTGGTGGTTCGATATGGCCAAATCC
AAATGGAATGACTGGATATC-TTTGGGAACCACAGTACCATGAAATGAAAATTCAGATCGATTTGATTCTATAATT----
-----TTCAATTTTCTGACAGAGCATTACCACTCACAAATGTTC-TTTATTGTGATGACCAAACTTCATTGACTAAAGC-
--------TTGCAAACTCTCTTTTACTAAATTTTATATGTGCATGTCTTTTTTTTTTTTGCAGGCGTATGATGGATGATC
GTAGGTTCCCCGAAGATGAGGGAGACTCAGAGGCTGTGAGAACCCGCCGCGACGAGGACAACGACAACTGGGAGGTTAGC
GGTATTCTGTGA--------------------------------------------------------------------
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>chr6B_1_TraesCS6B01G200800
CGGTTTTAAGGTTAAAAGGAACCTTATTTTTAGCTGAACTTTCGAAAAAGGGTTAGAAATTGGACATGGAGCATCTGCAC
CCGAGCTCAAATGCTCCATGATGAATGGTATTTAAAA---AAATAGTAAAAAAAACTA-------------TTTTTGTGT
TAAACTTTGTCAAATATTTTTTATGCTTGCAAAAAATCATCATGAAATGAAATTCGTGGAAGTCATGGCAGAAAAACAAA
GTTGATGGTCCAAAAATGATAGTTTTGCAAACATTTTGGAGTGCTGATTTTTTTCATGACTTCCATGAATGTCATTTCGT
GCTGAAATTTGTTATGAATAGAAATCATTTGTCAAAGTTTTCCATTTGTTTTTTTTACTATTTTTTTCTATTTTATTGTT
CATTAGGGTGC-TATGAGCTCGGGATCAGAATAGGACTTTCGAGAGAAATTCTTACTCGCTCGATCTTCCGGTTATTGTT
TTTAGGAGCAACAAGCACCCATAGAATTTTACCAGAGAGAT---AATATGTGGTGGTTTAGTTGAACGCGGGTATGAGTA
AGCAACATGAGGAAGAATATAGCGAAGGATCTAATTTTACAAAATTTAGTCTCTCTTTCGCGAATGCTCAAAATTTAGTT
GTTAACAGTTCAAGAAATAGGAAATTGTAATTTTAGTTCCATGTGTCTATTGTTATTTATCCCAAAAAGGAATACAACAT
TTTACTTTAGCACTCCCTCCGTCCTATAATGTAAAACGTCCTACATTATGAGACCATAATGTAAAACGTCCTACATTATG
GACGGAGGGAATACCAATTTTTCAATGTTTGAATTCTTCTTAGAATAGAATTAATAGAAATGAATATTCCAAAGAGGAA-
AAAAGATGTCACTTCCCTCCAAAACTAAGAAATAAATAAGGGGATAAGCCAAGCCTCACC---------TCCTTCCTTCC
CCAGCCTCATCCAAAAC----AACTCAAAGAGAGCGCAGCAACCGTCAGAG-CCGACTAGTCGAAGGCCACAGCCATGGC
CGCCCCTACCGGCACTTCCATGCTAAGGGCCCTGCTCCAGCTTCCCCTGGCTCCGTTCTCGGGGAAGAGCTCCGCGCCTT
CGGCGGTCCACATGACCGCCCGCCGCGCGCCGACGCCCGTGCTGGCCGCCAAGGGCTACAACGTGCAGATCGTGGTGGAC
GAGAACGAGGGGGAGGACTCCATCTTCCGGCGCTTCCGGCGGGAGGTGATGAAGGCCGGCCTGCTCCAGGAGATCAAGCG
CCGCCGGCGGCACGAGAACACCAAGGACAAGAAGATCCGCAAGGCCCGCGAGGCCGGCCGCCGCAACCGCCGCAGGTAAA
CCTCGCTGCACTTGACGCTGCCTTTCCTCGATGCTGTAGGAAGA---CTTGAGAATCTGAGACGTCCGAGCTTGGTTTCA
TGTCCGACGGTGGAAGGGGCCATTTCTTGGATGTTGGAAGTGGAACAGAAATGTGAAACGAATTCTGCAGGATTTGATTG
ATTTAGATTTTCTTTTTCCGGGGATTGATTTAGAATTTCAT-GGTGTT--------ATAATGAAATGTTCAGACAGACAG
TGTTTGTGGTGAT------GCCAAATAAGTGCAGCATGAGCTTGAACTCGTACAAA-TGTGATAGAAATTTACAGAAATA
AGTTAGCAAAGTTCATTGAGCCGCTGCCTGCAGTGGTGGTAGCAGCACAGTTTTGTTGGTGGTTCGATATGGCCAAATCC
AAATGGAATGACTGGATATC-TTTGGGAACCACAGTACCATGAAATGAAAATTCAGATCGATTTGATTCTATAATT----
-----TTCAATTTTCTGACAGAGCATTACCACTCACAAATGTTC-TTTATTGTGATGACCAAACTTCATTGACTAAAGC-
--------TTGCAAACTCTCTTTTACTAAATTTTATATGTGCATGTCTTTTTTTTTTTTGCAGGCGTATGATGGATGATC
GTAGGTTCCCCGAAGATGAGGGAGACTCAGAGGCTGTGAGAACCCGCCGCGACGAGGACAACGACAACTGGGAGGTTAGC
GGTATTCTGTGAATGGAATGATGACGGAATTCATAACAACTTTAGATGCACAGCTCTGGCAATTCGAGATCTT--CTTTT
GCCTGCATGGCACAAACTATATGAGTCACCAGCCGCCCTTTCCAGTTCAATTGTACTATTTAATTGTACCAAATGTTAGC
TAATGCAATCTCCATTCCGTATACTTCTGTACTACTACTTTTTTTTTTACTTCAAGATTCGGCACATGTTGCGAATGCAA
AGCATATACTATTTATCAGATCGTTCAAGTTGACGAGTAAGAGCCCTTTTTTTCTCAAAGGATTTTTGTAACTGCAGTTC
ATATGTTTTTTTTCTTCTATGGAGGCCCTTTGGATCAAAGCAATGCGAACATCGACAG-TTTATGAATTGGTTTCTTACA
CCTCAATTTCAAGTG---------------------------------ATTCCTAGCTAGCAAGAGGTTAGGCCTCATGA
ATCTCCTCTTGTTGGTGTCTTGCATGCACTTTCGCCCTCTTAACATCCAGAGTTGAGTAACATGTCTGCAAGTTGGGTGA
ATTGGGAAGTGGGGATTTTTCAATCCTACATTTTGCTGTTCTTTTGTTCCAAAGTATTGAATTCATGCTCTAGTCATTTC
ATCCAAAAGTCCGAAACGATAAAGATGCAGGCAAATTTCAAAGTAGGTTGCATAATTTTATTTATAACAGTGCGTTGGCA
GAGTCTTGGACTCAAGACCTCTTAACTCCGATACCTTATTG-------------------AATTCATCCAAAAGTCTGAA
CGATA-GAGAGAGGTGGACAATATATTTCAACACAAAAAATATGCAAACCCTGAACCCTTGAAAGTGAAAACATAGCAGT
TTTGCATCATCTTCCCGCCGTGGTTGGCTCGTTTCGGTGCAAGTATTTGGGGCTAGCTACTGGTACGACCGTTGGTTCGA
TGGCTGCGCCCCAAAGTTGCCCCATCCCTGTTGTTTTTGTTTGGGAGACACAAACATATTTCAGGACAATCGTTGGATGA
GATTATTTTGGAACTTGAGGAGTGCTCT
>chr6A_2
-GGTTTTAAGGTTAACAGAAACCTTATTTTTAGCCGAACTTTCGAAAAAGGGTTAGAAGTTAGACGTGGAGTATCCGCTC
CCGAACTCAAATGCTCCATGATGAACAGTAAAATTTTAGGAAATAGTAAAAAAAATCAAAAAAAATCTTTTTTTGTGTGT
TAAACTTTGACAAATGTTTTGTATGCTTGCAAAAAATCATCATGAAATGAAATTAGTGGAAGTCATGGCAAAAAAACAAA
GTTGATGGTCCAAAAATGATAGTTTTGTAAACATTTTGGAGTGCTGTTTTTTTTCATGACTTCCACGAATGTCATTTCGT
GCTGAAATTTGTTATGAATAGAAATCATTTGTCAAAGTTTTTCATTTGTTTTTTCAT-TACTTTTTTCTATTTTATTATT
CATCAGGGTGCATATGAGTTCGGGATCAGAATAGGACTTTCATGAGAAATTCTCACTCGCTCGATCTTCCGGTTATTGTT
TTTAGGAGCAACAATTACTTAGAG-ATTTTACCAGCCACAAATAAATATGTGATGGTTTAGTCGAACGCTGGTATGAGTA
AGCAACATGAGGAAGAAGACAGTAATGAGCCTAATTTTACAAAATTTAGTCTCTTTTTCACGAATGTTCAAAATTTAGTT
GTTAACAGTTCAAGAAATAGGAAATAGTAATTTTAGTTCCATCTGTCTACTGCTATTTAT-CCAAAAAAGAATACAACAT
TTTAGT-----ACTCCCTCCGAGGGAGTACCAA-----------------------------------------------
----------------TTTTTTTAATGTTTGAATTCTTCTTAGAATAGAATTAATAGAAATGAGTATTCCAAAGAGGAA-
AAAAGATGTCACTTCCCTCCAAAACTCAGAAATAAATAAGGGGATAAGCCAAGCCTCACCGGCTCAGCCTCCTACCTTCC
CCAGCCTCATCCAAAACCCGGAACTCAAAGAGAGCGCAGCAACCGTCAGAG-CCGACTAGTCGAAGGCCACAGCCATGGC
CGCCCCTACTGGCACTTCCATGCTGAGCGCCCTGCTCCAGCTTCCCCTGGCCCCGTTCTCGGGGAAGTGCTCCGCGCCTT
CGGCGGTCCACATGACCGCCCGCCGCGCACCGACGCCCGTGCTGGCCGCCAAGGGCTACAACGTGCAGATCGTGGTGGAC
GAGAACGAGGGGGAGGACTCCATCTTCCGGCGCTTCCGGCGGGAGGTGATGAAGGCCGGCCTGCTCCAGGAGATCAAGCG
CCGCCGGCGGCACGAGAACACCAAGGACAAGAAGATCCGCAAGGCCCGCGAGGCCGGCCGCCGCAACCGCCGCAGGTAAA
CCTCTCG----TTGACGCTGCCTTTCCTCGATGCTGTAGGAAGAAGACTTGAGAATCTGAGACGTCCGAGCTTAGTCTCA
TGTCAGACGGTGGAAAAGGCCATTTCTTGGATGTTGGAAGCGGAACAGAAATGTGACACGGATTCTGCAGGATTT-----
---------------------GGATTGATTTAGAATTTCAT-GCTGTTATATTATAATGATGAAGGGTCCAGACAGACAG
TGTTTGTGGTGCTGCCAAAGCCAAATAAGTGCAGCACGAACTTGAACACGTACAAA-TGTGATAGAAATTTACAGAAAGA
AGTTAGCAAACTTGATTGCCCCACTGCCTGCGGTGGTGGTAAGAGCACAATTTTGTTAGTGGTTT---------------
--------------GATATCGTTGGGAAACCACACTACCATGAAACGAAAATTCAGA-----------------------
-AATCTTCAATTTTTTGACAGGGCATTGCCGCTCACAAATGTTTTTCTATTGCAGCGACCAAACTTCATTGTCATG----
----------------TCTCTTTTACTAAAGCTTATATCTGCATGTCA-TTTTGTTTTTGCAGGCGTATGATGGATGATC
GTAGGTTCCCCGAAGACGAGGGAGACTCAGAGGCTGTGAGAACCCGCCGCGACGAGGACAACGACAACTGGGAGGTTAGC
GGTATTCTGTGAATGGAATGATGACGGAATTCATAACAACTGTAGATGCACAACTCTGGCAATTCGAGATCTTTTCTTTT
GCCTGCATGGCACAAACTATATGAGTCACCAGCCGCTCTTTCCACTTCAATTGTACTATTTTATTGTACCAAATGTTAGC
TAATGCAATCTCCATTCCGGATACTTCTGTGCTATTTTTTACTTACTT--TTCAGGATTTGTCACATTTTGCGAATGCAA
AGCATATA---TTTATCAAATCTTTCAAGTTAATGAGTAAGAGCCCTTTTTTTATCAAAGGATTTTCATAATTGCAGTTC
ATATGATTTTTTTCCCC-ATGGAGGCCCTTTGCATAATAGCAATGTGAACATCGAAAGTTTTATGAATTGGTTCCTTAGA
TCTCAATTTGAAATG---------------------------------ATTC----------------------------
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>chr6D_792
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-----------TACCGTTTTTTCATTGTTTGAATTCTTCTTAGAATAGAATTAATAGAAATGAATATTCCAAAGAGGAAG
AAAAGATGTCACTTCCCTCCAAAACTCAGAAATAAATAAGGGGATAAGCCAAGCCTCACCGGCTCAGCCTCTTTCCTTCC
CCAGCCTCATCCAAAACCCGGAACTCAAAGAGAGCGCAGCAACCGTCAGAGCCCGACTAGTCGAAGGCCACAGCCATGGC
CGCCCCTACCGGCACTTCCATGCTGAGCGCCCTGCTCCAGCTTCCCCTGGCCCCGTTCTCGCGGAAGAGCTCCGCGCCTT
CGGCGGTCCACATGACCGCCCGCCGCGCGCCGACGTCCGTGCTGGCCGCCAAGGGCTACAACGTGCAGATCGTGGTGGAC
GAGAACGAGGGGGAGGACTCCATCTTCCGGCGGTTCCGGCGGGAGGTGATGAAGGCCGGCCTGCTCCAGGAGATCAAGCG
CCGCCGGCGGCATGAGAACACCAAGGACAAGAAGATCCGCAAGGCCCGCGAGGCCGGCCGCCGCAACCGCCGCAGGTAAA
CCTCGCTACACTTGACGCTGCCTTTCCTCGATGCTGTAGGA---AGACTTGAGAATCTGAGACGTCCGAGCTTAGTCTCA
TGTCCGACGGTGGAAGGGGCCATTTCTTGGATGTTGGAAGTGGAACAGAAATGTGACACGAATTCTGCAGGATTTTT---
----------------------GATTGATTTAGAATTTCATTGGTGTT--------ATAATGAAGTGTACAGACAGACAG
TGTTTGTGGTGAT------GCCAAATAAGTACAGCACGAGCTTGTACTCGTACGAAGTGTGATAGAAATTTGTAGAAATA
AGTTAGCAAAGTTGATTGAGCCGCTGCCTGCGGTGGTGGTAGGAGCACAGTTTTGTTGGTTGTTTGATATGGCCAAATCC
ATATGGCATGACTGGATATCGTTGGGAAACCACAGTACCATGAAATGAAAATTCAGATTCAATGACCCGTGTTGATACAG
CAATCTTCAATTTTCTGACAGGGCATTACCGCTCACAAATGTTTTTTTATTGGGATGATCAAACCTCATTGACATGTCAT
TTTTTTTATTGAAAACTCTCCTTTACTAAAGCTTATATGTACATGTCA-TTTTTTTTTTGCAGGCGTATGATGGATGATC
GTAGGTTCCCAGAAGATGAGGGAGACTCAGAGGCTGTGAGAACCCGCCGCGACGAGGACAACGACAACTGGGAGGTTAGC
GGTATTCTGTGAATGGAATGATGACGGAATTCATAACAACTGTAGATGCACAGCTCTGGCAATTCGAGATCTTTTCTTTT
GTCTGCATGGCACAAACTATATGAGTCACCAGCCGCTCTTTCCACTTCAATTGTACTATTTTGTTGTACCAAATGTTAGC
TAATGCAATCTCCATTCCGGATACTTCTGTGCTATTTTTTACTTACTT--TTCAAGATTTGTCACATTTTGCGAATGCAA
AGCATATA---TTTATCAAATCTTTCAAGTTAATGAGTAAGAGCCCTTTTTT-ATCAAAGGATTTTCATAACTGCAGTTC
ATATGATTTTTTTCCCC-ATGGAGGCCCTTTGCATCAAAGCAATGTGAACATCGGAAGTTTTATGAATTGGTTTCTTAGA
CCTCAATTTGAAATGATTCCTCTTTTTTTGGTGGGGGAATTTGAAATGATTCCTAGCTAGCAAGAGGTTGGACCTCATGA
ATCTCTTCCTATTGGTGTCTTGCATGCACTTTCCGCCTCTTAACATTGCTACAAAGTTCACA----TGCGAGTTCGTGTG
AATTGGAAGTGAGGATATTTCAGTTCTACATTTTACTGTTCTTTTGTTCCAAAGTATTGAATTTGTGTTTCAGCCAATTC
ATCCAAAAGTCCAAACTGATGGAAAGAGACAGACAATATACTTCAACACTGCTTATCGGGTCTAAATTCTTTTAGTC---
----CTTAGATGTGAGACCTCTTAGCTTTGATACGATATTATTGAATTCAGGCTCCATCTAATTCATTGAAATTTCCGAA
CTAATGGAGAAATGAGGACAATATATTCAG-CAGAAAGAATATGCAACCTGTGAACCCCCGAAAGTGAAACTGTAGCAGT
TTTGCATCGTCTTCCCACCAAGGCTGGCTCCTGCCCGTGTAAGTATTTGGGGCTA-------------------------
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>SNPs
S--------------S--S---------------S-----------------------S--S---S-----S---S--S-
----S--------------------SS---SSSSSSS------------------SS-----------------S-----
---------S-----S----S---------------------------------S---------------S---------
---------------------------S------------------S------------------S--------------
-----------------------------------------S------------SSSS--S----------------S--
---S--------------S----------------------SS----------S--------------------------
--------------SS--SS-S--S----------SS-S-S-----------S---------S------S----------
-----------------S-S--SS-S-SSS------------------------S----S------S-------------
-------------------------S----------------S------S--S-------S-------S-----------
----S-SSSSS----------SSSS-SS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS----SS---------------------------------------------------------------
--------------------------S-----------------------------------------------------
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------------------------S--S-----------------------S----------------------------
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-------S-----------------------------------------------------------------S--S---
--------------------------------------------------------S------------------SSSSS
SSSSSSSSSSSSSSSSSSSSS-------------------------------------------S---S-----------
------------------------------------S-------------------------------------------
-------------S-----------------S----------S---------------------S---------------
-S----S----------------S--S-------------------------------SS-S-SSSSSS-S-SSS-----
---------------------S--------S------------S--------S--------------------SSSSSS-
-----------S------------------SS---------------SS-------------------------------
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-----------------------------------------S--------------------------------------
------------------------------------S-------S----------------S------------------
-------------------S----------S---S-SS--SS--SS--SS---------S-S-----S------------
--------SSS-------S---S--------S-S-------------------S------------SS------------
-----S--------SS-S--------------S------------S---------S----------------------S-
---------S--S--------------------------------------------------------S-S--------
-----S--S-S----------------------SS-----------SSSS-SSSSSS-S---SSSS---S----S-SSSS
-S-S-------S----S-----S-S---------S----------------------------SS--S-SS--S--S---
------------S--SS---SS-S-SSS-SSS-S-S-SS-SSSS-SSSSSSS-S--SSSS-S--S-SSSS-SSSS-SSSS
SSSS---S--SSSS----------S--SS-----SS----S--------------------------SS---SS--S---
-S-SS-----S-S-S------------SSSS--S---S---------S-SS-------SS----------SSS-------
--------S-------S--SS--S------S-SS-S---S---------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_744
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----CTTTAGCACTCCCTCCGTCC--------------------------------------------------------
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>reverse_2793
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------------------------------------------------------------------------CGTTGGCA
GAGTCTTGGACT--------------------------------------------------------------------
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