>input_sequence_63005
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----------------------------------------ATGGACACCGGCTTGGCCATGAATGTGCTGCCGATGAGCC
CCGCCGGCTCGTCGGCTGTGACCACCGGCGATCTGAGGAGGGGCGCGTGGACGGCGGAGGAGGACCTTCTGCTCGTCGAC
TACATCTCCCGGCACGGCGAAGGACGCTGGAACTCGCTCGCTCGATGCGCAGGTACGTACT-----------TAATTGTG
TGCACCACTGATAGCTGGTT--------------------ATGCATGTCACATCTGCTTTAGTTCTTTGTGATGTGATCC
ATATTCACGTCCACATCGCAA------------------------GTAACTACACTATAGCTAAACTGTTTCTCTGTCAA
TCTGGA--------------------------------------------------------------CACGTGCAGGCC
TGAGGCGCACCGGGAAGAGCTGCCGGCTCCGGTGGCTCAACAACCTCCGCCCCGACGTCCGGCGCGGCCACATCACGCCG
GAGGAGCAACTCCTCATACTCGACCTGCACTCCCGGTGGGGCAACCGGTGGTCAAAGATCGCGCAGCACCTCCCGGGGCG
AACGGACAACGAGATCAAGAACTACTGGCGTACCAGGGTGCAGAAGCACGCCAGGCAGCTCGGATGCGACGTCAACAGCG
ACCGCTTCCGGCAGGTCGTCAGGCTCGTTTGGATGCCGCGCCTCCTCGAGCGCATCCAGGCGGAAAGCTCCTCCTCCGCC
GCTGCTGCCAGCGAGTACGTCGCACTGC------------------------CGGTGGCTGGCGAATCACAGTCG-----
-TACCACTGCTTCAATCACGCGAGCAGCGAGTGTT------GGACAGCGGTGGTCGCCATGAGCCCCGATACCCCGAGCA
TGCCTCGGTCTTCGCTGTCATCGACGGAGGCGTCACATGGAGGGCATTTCCCAGAGTGGGGCTCTGCCGCTGCCACGGCC
AACATTGAGGGTTCGATGATGCACTCCTGCAGCGGCGAGGGTGGGGCCGTAGGTGGCGATCATCACGTTTTCCCTGGCGA
CAAACTCAATGAGAGCTGGTCGGAGCTCCTCGCTGCCAGCGATGTCCCGGGTTTCGAGTTCGGAAATTTCGAAGACAGCT
TGTGG-GCCTAG--------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G014800
GCTCTAGTGCATTTGCATGTGGAGAGAATGTCGGAGGAGACATTTTTATGCCCTGGTAATTTCTATGTAAACTGGATGGT
AACTCACGTACCACAGACGTGATAACTTATTTAGCGTAGGTCTGATAAGTTTTGACCCAAAAAAATAATTCGTCAAAATA
TACTAACATGGGATCTAGTTTCGAAGGTCTCGTCGCAACGAATTTTTTATGTGAAAACGGTTTTTCAATCGAACCAACGG
TTTGAGCTACAAAACATTTTGTAGTTTTGAAATAAAAAAGAATCTTTTGCTGACATCATCATATTTTATATTAGTTTGCA
TGCATATGGCAAGACATGCTTTTGCTCTGGTTTTTTGCTTAGTGGAGTGAGGCTGCATGCACGTGATTAATTAAACTATG
ATGTGTTCGGATATGTTACTTAAATTCAGTACGTTAGGAAGTTAGCACAGTCCATAATAATTAGCACTAGATCCATCATA
AAAAAAAACTTTTATTTTTTTAATGTGTTTAGTATTATAGATATTGATGGTTTTGCTACGAAATTCTGACTTGTGCCTCT
TAACGTGCCAGAGGTGAAAACCAAGGTCATACTCATTTAGGGAGGCCCCAAAGTCTTTTTTTGGTTCTTATATAAAAGGA
ACACTGGTCAACCTCGTAACCCTAGTGCGTCTGTCCCATTAAATTGATTGATTTCCATGTCAAACAGCAACCTGACTTTG
ACATATATAAGCATTTGGTTGAAGACATTAATTGGATCGATCAGTACAAAAAAACATACGTACGTGGGCTGGTCCACGGT
CAAATGTTGGCCGGACGGCACGCGTGCGCCCTCTCACGTTTATCAGTCCATATCCTATATAAACCCGTGTTCACCCCTGC
CTCACTCTACTCAAGCTACCCATCCGCCAGCATCCGAGTCTCACTCTGCTCAAACTTGTTACAACCTAGCTAGCTAGCCA
CCACTCACTTCTTGAAGCTTCGTCGACGACCCTCATCGGCATGGACACCGGCTTGGCCATGAATGTGCTGCCGATGAGCC
CCGCCGGCTCGTCGGCTGTGACCACCGGCGATCTGAGGAGGGGCGCGTGGACGGCGGAGGAGGACCTTCTGCTCGTCGAC
TACATCTCCCGGCACGGCGAAGGACGCTGGAACTCGCTCGCTCGATGCGCAGGTACGTACT-----------TAATTGTG
TGCACCACTGATAGCTGGTT--------------------ATGCATGTCACATCTGCTTTAGTTCTTTGTGATGTGATCC
ATATTCACGTCCACATCGCAA------------------------GTAACTACACTATAGCTAAACTGTTTCTCTGTCAA
TCTGGA--------------------------------------------------------------CACGTGCAGGCC
TGAGGCGCACCGGGAAGAGCTGCCGGCTCCGGTGGCTCAACAACCTCCGCCCCGACGTCCGGCGCGGCCACATCACGCCG
GAGGAGCAACTCCTCATACTCGACCTGCACTCCCGGTGGGGCAACCGGTGGTCAAAGATCGCGCAGCACCTCCCGGGGCG
AACGGACAACGAGATCAAGAACTACTGGCGTACCAGGGTGCAGAAGCACGCCAGGCAGCTCGGATGCGACGTCAACAGCG
ACCGCTTCCGGCAGGTCGTCAGGCTCGTTTGGATGCCGCGCCTCCTCGAGCGCATCCAGGCGGAAAGCTCCTCCTCCGCC
GCTGCTGCCAGCGAGTACGTCGCACTGC------------------------CGGTGGCTGGCGAATCACAGTCG-----
-TACCACTGCTTCAATCACGCGAGCAGCGAGTGTT------GGACAGCGGTGGTCGCCATGAGCCCCGATACCCCGAGCA
TGCCTCGGTCTTCGCTGTCATCGACGGAGGCGTCACATGGAGGGCATTTCCCAGAGTGGGGCTCTGCCGCTGCCACGGCC
AACATTGAGGGTTCGATGATGCACTCCTGCAGCGGCGAGGGTGGGGCCGTAGGTGGCGATCATCACGTTTTCCCTGGCGA
CAAACTCAATGAGAGCTGGTCGGAGCTCCTCGCTGCCAGCGATGTCCCGGGTTTCGAGTTCGGAAATTTCGAAGACAGCT
TGTGG-GCCTAGAGGATATTTACTCATATAGATGAACATAGAGCAAAAACCCGAGAGAGAGAGAGACACACACACACACA
CACACACACATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGAGCATGGAAAAGA
GGGTTTGGCGAAAAACTAGTTTGTGATTTTAGCGTTCACAGGGTGACTAATTATTAGGGACAACATGGTATGCAAAAATT
TGCATATTAAATATCTCCTTTAATCCTTGTACAAGGTTAGGGGATTTGGATTATTTTTCTGATTACATATTTGTATAAAG
ATTATTTTCCATGAAAAAACTAACGTGGCAACCAGCATGCCAATGATTGTTTGTAGTTTTGCCGAGCTACATTGTACTAT
ATATATAAAGCCTTGAGAAATCGAATTCATAATTGCATGATGTGTTGCGTGAAACCTTGCTTAATTTGATTATCTATCTA
TATGCTGCTTCAAATTTCTTGATTGTTTATTTTTTTTAAAGATTTCTATTAAATCCTGCAATCATCAGTTCACCATATTT
AGTGGACAAAATCCACACTAAAAATTGCACTTTCATTTTTCCTTAAATTTCACAATATCGCAATTCTAGGGTAAATAATA
TTCAGTTAGGGCGGATGAGATATTTGAAAATTTTGAACAGTTTTGCCATACAAAAATACACTTAACCTGGATAAATATGT
GCTGGAGAGTATGTAGCAACTTGTTGATCTTTAAAGTAAATTTGGTATAAAATCTCACCATTAGGGATGTGATGATTTTA
GCATGTATAAAAAAAAATACTCATTGCTAAGATAAAAAATACGAAATTAGCATGTATAATGATTTCTCAACGATAGTTAC
TATTAATCATCAATGAAAGACAAGATGAAAGATTTTTTTTGTCTTCAAACTTTAAAATTTCAAGTTGCAAGGAGTCTTGC
ACTGCCGGGTTGGATTTTTGTTGCAAGAAGGACCTCAACATTATATTAAAAC
>chr1A_1067
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--------------------------GGCGACCTGAAGAGGGGCCCGTGGACGGCGGAGGAGGACATGCTCCTCGTCGAC
TACATCTCCAAGCACGGCGAGGGGCGCTGGAACTCGCTCGCTCGATGCGCAGGTACTTACTACTTAATCAGTTAATTATG
TATGCAACTGAGAGCTAGCTAGCAATCTAGTGGCAAGATCATGCATGTCACATCTGCTTTAATTTAGAGCTCTTTCTGAT
CGATCACGTCGCAAGAGATAAGATGAGCTAGCGCTTTTCGTTGCCGTACCTAGCGTGTAGCTAAGCTATGTGCACTGATC
ACTTGCAGCTCATTATCCGCTGAGGTCCCTCCTCATGTTCTTTTTCGCTGATATGGGCCTGGTTTTGGCACGTGTAGGCC
TGAGGCGCACTGGGAAGAGCTGCCGGCTCCGGTGGCTGAACTACCTCCGCCCCGACGTCCGGCGCGGCAACATCACGCCG
GAGGAGCAGCTGCTGATCCTGGACCTGCACTCCCGGTGGGGCAACCGGTGGTCCAAGATCGCGCAGCGCCTCCCGGGGAG
GACGGACAACGAGGTCAAGAACTACTGGCGGACCAGGGTGCAGAAGCACGCCAAGCAGCTCCACTGCGACGTCAACAGCG
ACCGCTTCCGCGACGTCGTCAGGCAAGTCTGGATGCCGCGCCTCCTCGAGCGCATCCAGGCCGAAAGCTCCTCCTCCTCC
GCCGCCGCCGCTGCAGGCGTGGGTGTTCCGGCGCTGACAAGGGCGATGAGCTCGCCGGCCGGTGCATCACA---G-----
-TACCACTGCTTCGATCACGCGAGCAGCGGGGGGCCGAGCCGGAAGGTGGCGGTGACCATGAGCCCTGACACCTCGAGCA
CGCTCCGGTCTTCTCTGTCACCGGCGGAGACGTCGCACGGAGCCCATTTCCCAGCGTGGGGCGCTGCCACTGCCACGGCG
AACGTTGATGGCTCGATGATGCAGTGCGCCGGCCGCGAGGGTGGGGCCATAGGCGGCGATCAGTACGTCATCCACGGCGA
CAGCCTCAGCGGGAGCTGGTCGGAGCTCCTCGCCGCCACCGATATCCCGGACTTTGAGTTCGGAAATTTCGACGACAACT
TGTGGAGCCTAGAGGACATTTACT--------------------------------------------------------
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>chr1B_1308
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--TGGA--------------------------------------------------------------CACGTGTAGGCC
TGAGGCGCACTGGGAAGAGCTGCCGGCTCCGGTGGCTGAACTACCTCCGTCCCGACGTCCGGCGCGGCAACATCACGCCG
GAGGAGCAGCTGCTGATACTGGACCTGCACTCCCGGTGGGGCAACCGCTGGTCCAAGATCGCGCAGCGCCTCCCGGGGAG
GACGGACAACGAGGTCAAGAACTACTGGCGCACCAGGGTACAGAAGCACGCCAAGCAGCTCCACTGCGACGTCAACAGCG
ACCGCTTCCGCGACGTCGTCAGGCAAGTCTGGATGCCGCGCCTCCTCGAGCGCATCCAGGCCGAAAGCTCCTCCGCCGCC
GCCGCCGCTGCTGCAGGAGTGGGTGTTCCGGCGCTGACAAGGGCGATGAGCTCGCCGGCCGGTGCATCACA---GTACCA
CTACCACTGCGTCGATCACGCGAGCAGCGGGGAGCCGAGCCGGAAGGTGGCGGTGACTATGAGCCCTGACACCTCGAGCA
CGCTCCGGTCTTCTCTGTCACCGGCGGAGACATCACACGGAGCCCATTTCCCAGCGTGGGGCGCTGCCACTGCCACGGCG
AACGTTGATGGCTCGATGATGCAGTGCGCCGGCCGCGAGGGTGGGGCCATAGGCGGCGATCAGTACGTCATCCACGGCGA
CAGCCTCAGCGGGAGCTGGTCGGAGCTCCTCGCCGCCACCGATATCCCGGACTTTGAGTTCGGAAATTTCGACGACAACT
TGTGGAGCCTAGAGGACATTTACT--------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS-----S----S-------S--------------------S-S--S---------
---------SS---------S--S--------------------------------S--------------------S--
-SSS-S-----S----S-S------------------------------------------S--SSSS-SSS-S-SSSSS
SS--SSSSSSS--SSSSSS-----------------------------S---SSS-S-------S--S-S-SSSSSSSSS
S-------------------------------------------------------------------------S-----
----------S--------------------------S---S--------------------------S-----------
--------S--S--S-----S--------------------------------S-------------S----------S-
S------------S----------------S----------------------S-------SSS----------------
----------SS-S----------SS--S--------------------------------S------------------
--S--S---SSS-SSSS---S-SSS-S---------------------------SS---S--S-S------SSS------
-------------S---------------S-S-SS---------SS-S--S---SS----------S--S---S------
S--SS--------S------S--S-----S-------S----SS----------S-------S-----S----------S
---S----S--S-----------S-S-SS-S--S--------------S----S--------SS----SS---SS-----
--SS----SS-S---------------------S----S----S------SS--S-----------------S----S--
----------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_932
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--------------------------------TCCGAGTCTCACTCTGCTCA----------------------------
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>reverse_2602
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-----------------------------------------GTGTTGCGTGAAACCTTGCT-------------------
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