>input_sequence_62998
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-----------------ATGGAGCCGCCACCTTCTCCGCTGGGCGCCGGCGCCTGCGCTGTCTGCTGCATGTGCGGCGAC
CGCGGCCTGCCGCACGAGCTGCTCCGCTGCAAGCTCTGCCGCGTCCGCCTGCAGCACAGGTGCGTGCCGGCGTGTGTGCC
TTGCGCGATCGCTCCAGCTCTCCTTCTCCTATCGATCGATCCATCTGACCTGGGCGTGTGTTTGTTATGTGTGTAGATAC
TGCAGCGATCTGTACCCGAGGGCCACGGCGTACAGGAGGTGCAACTGGTGCCTGAGGGAGCCCGCAGAAGCCCACGCCCA
AGCGCACGCTCAAGCTCAACCGGTGGCTAGCAAGAAGGCGGAGAAACGGAAGATGGTGCAATCAACGGAGACGTCCACCT
CCGACGAGGAGGCGCGGCGGCAGCACGAGGCCGGATGCGCCACTGCTACGAGGTCCAGGAGATCGGCCGCGGAGGTTGGT
CAGCCGGTCAAGAAGCCCAAGGTCGACGAGAGGCCACCGCTGCCCCCGTCGCCGGGCACGGCGGCGAAGCGGAACAGCGG
CGACAAGAAGCCTAAGGTCGACGAGTGGCCAGCGCTGCCCCCGTCGCCCGGCACGGCGGCGAAGGGGAACAGCGGTGACA
AGAAGCCCAAGGTCGACGACAGGCAAGCGCTGCTGCCTCCGTCGCCGGGCACGGCGGCGAAGGGGAACAGCGGTGACAAG
AAGCCCAAAGTCGACGACAGGCAAGCGCTGCTGCCTCCGTCGCCGGGCACGGCGGCGAAGGGGAACAGCGGTGACAAGAA
GCCCAAAGTCGACGAGAGGCCACCGCTGCCTCCGTCGCCGGGCACGAAGGCGAAGGGGAACAGCGGCGACAAGAAACCTA
AGGTCGACGAGTGGCCGGCGCTGCCCCCGTCGCCGGGCACGGCGGCGAAGGGAAACAGCGGCGACAAGAAGCCGATGCAG
GCGGGGAAGCTGGCGCGGCAGGGTAGGGTCAAGGTGAGGCGGTACAAGCTCCTGGCAGAGGTGATTAGCTGCTAG-----
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>chr2A_1_TraesCS2A01G317800
CCCGTTGTCCGCTCGCCGATCCTCTAGGCACCAAGAATGGAGAGTGCGTTGAGCTAGTTTGGTTAGGTGTTTTTGTCGTC
TTTTGAGTTGTTTGGTATAGGGGGGGCGTGGCCTGTGTGCTCTGTGACCGTCCTCTTCGCCATTGTTGGCTCAAGTTTGG
TCAAGGCGGGTTAGTTGACGGTGTTGTCACGGTGAATGTGGGTGCTATCTTCTGTGGTCGCACGTTGCCGAAAAGCGTTG
TACCAGCCGTTTTGGCTCTTCTTCTTTAATATATAGTACGCACCCTCGTGCGTATTCGAGAAAAAAGTAGCATCAAAAGG
ATACAAATTAAATTATGCGACACGAGACCTCTGCATAGTTAAAATGCACACAACCAAAGACAACAAGGCGGGTTAATTGA
ATTATGTTGATCCATTCTTTCTAACCAGCCATGATGATGCGGCGCAATGAGCCGTCCTTGTCCCTAGCACCGAATCGTCA
ATGTCGCTGGTTGTCTCGAACCAGCCGAGCCGAGGTGGCCGGAGCGACGCGCCATCGCCCATCGGGATCACACGGCAGGA
CGAACAGATAGATGACGGGCGCATGGGTCCCATCATCAGAAAATGAAACTAAACCACAGCCCTTAATTGCAAGTCTTGTC
CTCAGTCCACGGTAGCCATTCACATTCATC------------------------------------TC----CCTCTCTC
TCTCTCTCGCGCGCGCGTCGGAGGGAGAGTCCTTGGGTCTATATAAATAGGAAGGAAGGCCACCTCGTCTCCC-------
-TCTCCTACCCTA-CCCCCCGGGCGTACTCAACCTCACGGAAGCTGCCCCGGTACGCCCCGCAACCATAAACGCGACGCC
CAGAGAAGATGTGAGCGCGTTAATGCCTAGCCTCGTACGCTACGAGCATCCACATATCTACCAATCCGCACACCCGGACC
TT--TCCCGGCCTCGGCCGTCTCACTTCA------TCCCATCCACCTGCAGCTAGCAGCGGCCTGCCGCGCGCGCTGTGG
ATCATAAGCAAGCTTCCATGGAGCCGCCACCTTCTCCGCTGGGCGCCGGCGCCTGCGCTGTCTGCTGCATGTGCGGCGAC
CGCGGCCTGCCGCACGAGCTGCTCCGCTGCAAGCTCTGCCGCGTCCGCCTGCAGCACAGGTGCGTGCCGGCGTGTGTGCC
TTGCGCGATCGCTCCAGCTCTCCTTCTCCTATCGATCGATCCATCTGACCTGGGCGTGTGTTTGTTATGTGTGTAGATAC
TGCAGCGATCTGTACCCGAGGGCCACGGCGTACAGGAGGTGCAACTGGTGCCTGAGGGAGCCCGCAGAAGCCCACGCCCA
AGCGCACGCTCAAGCTCAACCGGTGGCTAGCAAGAAGGCGGAGAAACGGAAGATGGTGCAATCAACGGAGACGTCCACCT
CCGACGAGGAGGCGCGGCGGCAGCACGAGGCCGGATGCGCCACTGCTACGAGGTCCAGGAGATCGGCCGCGGAGGTTGGT
CAGCCGGTCAAGAAGCCCAAGGTCGACGAGAGGCCACCGCTGCCCCCGTCGCCGGGCACGGCGGCGAAGCGGAACAGCGG
CGACAAGAAGCCTAAGGTCGACGAGTGGCCAGCGCTGCCCCCGTCGCCCGGCACGGCGGCGAAGGGGAACAGCGGTGACA
AGAAGCCCAAGGTCGACGACAGGCAAGCGCTGCTGCCTCCGTCGCCGGGCACGGCGGCGAAGGGGAACAGCGGTGACAAG
AAGCCCAAAGTCGACGACAGGCAAGCGCTGCTGCCTCCGTCGCCGGGCACGGCGGCGAAGGGGAACAGCGGTGACAAGAA
GCCCAAAGTCGACGAGAGGCCACCGCTGCCTCCGTCGCCGGGCACGAAGGCGAAGGGGAACAGCGGCGACAAGAAACCTA
AGGTCGACGAGTGGCCGGCGCTGCCCCCGTCGCCGGGCACGGCGGCGAAGGGAAACAGCGGCGACAAGAAGCCGATGCAG
GCGGGGAAGCTGGCGCGGCAGGGTAGGGTCAAGGTGAGGCGGTACAAGCTCCTGGCAGAGGTGATTAGCTGCTAGCTAGG
ATCACGGAATCAAAAGGGGAAGTAGCT--------------------AGCCACCTTCGAC-------ATTTGGTGTCGAT
GTATGTAAATACCGTTTACCCGTCGTGTACGGGTTTTCTCTCTCTTTTTTGGGAGAGAGTCGACTACCATACTAGTGCTG
TACACATCTTAAGCCGTCAGTTTTA---TACACCAGTTGACGTGCACAGAGGGGTCGGTTTGACTTTATGCCGGGGCGGC
GATGAGCTGGTGCGACTGCTTTAGTCTGCATATTGCATCCGATTGCCCCGTGAAGCATAGATTGGAGGTGGAAGTGAGCG
GTGGCATGTCGGAGCGATGACA----TCCAGAGATGAGTCAGTGCAACAGTCATGGTCTATGAACGGTTACCCGTCGCAA
CATAGATTGTAAGTGGTTAGGCTGTGCGACACCGTAACTTGAGAGTGAGTGGTGGTATGTCGGAACGGCGGCCCTGAAAG
GTGAGGTCGGTCAGCCCGTCAAGAAG-CCAAGGTCGACAAGAAGCCAGTGTTGCCCCTGTCGCTGGGGATGGCAGCGAAG
GGGAACAGCAACGACATGAAGCTCTTGGCAGAG-----------------------------------------------
----------GTAAGAACAAAAGGAGAAGTAGCTAGCCACCATCGACATTGGTGTCACCTGTC-----------------
--TATACATGTTTTCCCTCCTCTTTGTTTTTGAGAGAGAGAGAGAGTCGACTAGGTGCTAGTGATGTAC-----------
--------------------------------------------------------------------------------
------------------------AAATCTAAGAGTTTCCAGTAAATTAATTCCTTTTTACCTTATATACACCATGGGTT
TATGTGACAGTATTGTTAGCGAGCTTGTCGGCTTAGCGTTCCAA------------------------------------
-------------------------AGAGAGATCTGATTTTACATTGGAGCAGCGGCAGAATATCGTAGCCTACGGACCA
TTGCCCCATGAAGCATAGGTTGTAGGTGGTAGCGAGTGGTGGTATGTCAATGGTGAACCTGGAAGGTGGTGTTGGTGGAC
CATGCCAATGGACGACT-GAGGGGTCGGAAATCAAGGTGGTGGCCTTGA--GAGTTTGACAACGTTGTGGTTGTGTGAGC
GAGGT
>chr2D_416
TCTATT--------------------------------------------------------------------------
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--------------------CTAACCAGCCATGATGGTGCGGCGCAATGAGCCGTCCTTGTCCCTAGCACCGAATCGTCA
ATGTCGCTGGTTGTCTCCAACAAGCCGAGCCGAGGTGGCCGGAGCGACGCGCCATCGCCCATCGGGATCACACGGCAGGA
CGAACAGATAGATGACGGACGCATGGGTCCCATCATTAGAAAATGAAACGAAACCACAGCCCTTAATTGC-AGTCTTGTC
CTCAGTCCACGGTAGCCATTCACATTCATCCCTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTTGCGT----------GGGAGAGTCCTTGGG-CTATATAAATATGAAG----GCCACCTCGTCTCCCCCC----
-TCTCCAACCCTACCCC------CGTACTCTACCTCACGAAAGCTGCCCCGGTACGCCCCGCAACCATAAACGCGACGCC
CAGAGAAGATGTGAGTGCGTTAATGCCTAGGATCGTACGCTGCGAGCATCTACATATT--------CAC---CCCGGACC
TTTCTCCCGGTCTCGACCGTCTCACTCCATCTCCGTCCCATCCACCTGCAGCTAGCAGCGGCC----GCGCGCGCTGTGG
ATCATAAGCAATCTTCCATGGAGCCGCCGCCTTCTCCGCTGGGCACCGGCGCCGGCGCTGTCTGCTGCATGTGCGGCGAT
CGCGGCCTGCCGCACGAGCTGCTCCGCTGCAAGCTCTGCCGCGTCCGCCTGCAGCACAGGTGCGTGCCA-----------
-TGCGCGATCGCTCCAGCTCTCCTTCTCCTATCGATCGAGCCATCTGACCTGGGCGTGTGTTTGTTATGTGTCTAGATAC
TGCAGCGATCTGTACCCGAGGGCCACGGCGTATAGGAGGTGCAACTGGTGCCTGAGGGAGCCCGCAGAAGCCCACGCCCA
ACCCCACGCTCAC------CCGGTGGCTAGCAAGAAGGCGGACAAACGGAAGATGGTGGCATCAACGGAGACGTCCACCT
CCGACGAGGAGGAGCGGCGGCAGCACGAGGCCGGATGCGCCACTGCTACGAGGTCCAGGAGATCGGCTGCGGAGGTTGGT
AAGCCGGTCAAGAAGCCCAAGGTCGACGAGAGGCCACCGCTGCCCCCGTCGCCGGGCACGGCAGCGAAGGGGAACAGCGG
CGACAAGAAGCCCAAGGTCGACGAGACGCCAGCGCTGCCTCCGTCGCCGCGCACGGCAGCGAAAGGGAACAGCGGTGACA
AGAAGCCCAAGGTCGATGAGAGGC---CGGCGCTGCCTCCGTCGCCGGGCGCGGCAGCGAAGGGGAACAGCGGTGACAAG
AAGCCCAAGGTCGACAAGAGGCCAGC---GCTGCCTCCGTCGCCGGGCACGGCGGCGAAGGGGAACAA------------
---------------------------------------------------------------CGGCGACAAGAAGCCTA
AGGTCGACGAGTGGACGGCGCTGCCCCCGTCCCCGGGCACGGCGGCGAAGGGGAGCAGCGGCGACAAGAAGCCGATGCAA
GCGGGGAAGTTGGCGCGGCCGGGTAGGGTGAAGGTGAGGAGGTACAAGCTCCTGGCAGAGGTGATTAGCTGCTAGCCAGG
ATCACGGAATCAAAAGGGGAAGTAGCTGGCAACTTAGCCAAATAGCTAGCCAACATCGACATTGGTGATTTGGTGTCGAT
GTATGTACATATCGTTTGCCCGTCGTGTACGGGTTTCCCCTCTCTTTTTTGGGAGAGAGTCGACTACCGTGGTAGCGCTG
TACAGATCTTAAACCGTCAGTTTTAGTATATACCAGTTGACGTGCATAGAGGGGGCGGTTTGACTTTATGTCTGGGCCGC
GATGAGCTGGTTGCTCCGT----------------------------------------------------------GCG
GTGGTATGTTGGGGCGATGGCCTCCCTCAAGAGATGAGTCAGTGCAACGGCCATGGTCTGCGAACGGTTACACTTCGCAA
CTTAGGTTGTAGGTGGTTAGGCCGTGCAGCATTGTAACTTGAGAGTGAGTGGTGGTATGTCGGGGTGGTGGCCCTCGAAG
GTTAGGTCAGTAAGCCGGTCAAGGAGCCCAAGGTCGACGAGAAGCCAGCGCTGCCACTGTCGCTGGGGATGGTAGCGAAG
GGGAACAACAACGA------------------------------------------------------------------
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>chr2B_416
TCTATT--------------------------------------------------------------------------
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--------------------CTAACCAGCCATGATGATGCAGTGCAATGAGCCGTCCTTGTCCCTAGCACCGAATCGTCA
ATGTCGCTGGTTGTCTCCAACC-----AGCCGAGGTGGCCGGAGCGACGCGCCATCGCCTATCGGGATCACACGGAAGGA
CGAACAGATAGATGACGGACGCATGGGTCCCCTCGTAAGAAAATGAAAATAAACCACAGCCCTTAATTGC-AGTCTTGTC
CTCAGTCCATGGTAGCCATTCACATTCATC------------------------------------TCTCTCCCTCTCTC
TCTCTCTCTCGC----------CGGAGAGTCCTTGGGTCTATATAAATAGGAAG----GCCACCTCGTCTCCCACCCCCC
ATCTCCAACCCTA-CCC------CGTGCTCTACCTCACGAAAGCTGCCCAGGTACGCCCCGCAACCATAAACGCGACGCC
CAGAGAAGATGTGAGTGCGTTAATGCCTAGGCTCGTACGCTACGAGCATCTACATATCTACTGATACAC---CCCGGACC
TT--T------CTCGGCCGTCTCACTTCA------TCCCATCCACCTGCAGCCGGCGT----------------------
---------AAGCTTCCATGGAGCCGCCACTTTCTCCGCTGGGCGCCGGCGC------TGTCTGCTGCATGTGCGGCGAT
CGCGGCCTGCCGCACGAGCTGCTCCGCTGCAAGCTCTGCCGCGTCCGCCTGCAGCACAGGTGTGTGCCTTGCG------C
TTGCGCGCTCGCTCGAGCTCTCCTG------TCGATCGATCCATCTCACCTGACCGTGTCTTTGTTATGTGTGTAGATAC
TGCAGCGATCTGTATCCGAGGGCCACGGCGTACAGGAGGTGCAACTGGTGCCTGAGGGAGCCCGCAGAAGCCCATGCCCA
ACCCCACGCTCAG------CCGGTGAAAAACAAGAAGGCGGAGAAACGGAAGATGGTGGCATCAACGGAGACGTCCGCCT
CCGGCGAGGAGGAGCGGCGGCAGCACGAGGCCGGATGCACCACTGCTACGAGGTCGAGGAGATCGGCTGCGGAGGTTGGT
AAGCCGGTCAAGAAGCCCAAGGTCGACGAGAGGCCACCGCTGCCCCCGTCGCCAGGCACGGCAGCGAAGGGGAACAGCGG
TGACACGAAGCCCAAGGTCGACGAGAGGCCACCGCTGCCCCCGTCGCCGGGCACGGCGGCGAAAGGAAACAGCGGCGACA
AGAAGCCTAAGGTCGACGAGTGGC---CGGTGCTGCCCCCGTCGCCGGGCGTGGCGGCGAAGGGGAACAGCGGTGACAAG
AAGCCCAAGGTCGACAAGAGGCCAGC---GCTGCCTCCGTCGCCGGGCACGGCGGCGAAGGGGAACAA------------
---------------------------------------------------------------CGGCGACAAGAAGCCTA
AGGTCGACGAGTGGACGGCGCTGCCCCCGTCGCCGGGCACGGCGGCGAAGGGGAGCAGCGGCGACAAGAAGCCGATGCAG
GCGGGGAAGCTGGCGCGGCCGGGTAGGGTCAAGGTGAGGAGGTACAAGCTCCTGGCAGAGGTGATTAGCTGCTAGCTAGG
ATCACGGAATCAAAAGGGGAAGTAGCTGGCAACT-AGCCAAATAGCTAGCCACCGTCGACAT-----------------T
GTATGTAAATATCGTTTGCCCGTCGTGTACGGGTTTTTCGTCTCTTTTTGGGGAGAGAGTCGACTACCGTGCTAGTGCTG
TACAAATCTTAAGCCGTCAGTTTTT---TATACCAGTTGACGTGCATAGATGGTGCGGTTTGACTTTACGTCGGGGCGGC
GATGAGCTGGTGCGACTGCTTTAGTATGCATATTGCATACGGTTGCTCCGTGAAGCATAGACTGGAGGTGGTAGTGAGCG
GTGGTATGTCGGGGCGATGGCCTGCTTCCAGAGACGAGTCAATGCAATAGTCATGGTCTGCGAACGGTTACCCTTCGCAA
CCTAGACTATAGGTGGTTAGGCCGTGCGGCACTGTAACTTGAGAGTGCGTGGTGGTATGTCGGAGCAGTGGCCCTAGAAA
GTGAGGTCGGTAAGCCGGGCAAGAAGCCCAAGGTCGAGGAGAAGTCAGCGCTGCCCCTGTCGCTGGGGATGGCAGTGAAG
GGGAACAACAACGACAAGAAGCCGATGCAAGCGATAAAGTTGGCACGACCAGGTAGGGTCAAGGTGAGGAGGTGCAAGCT
CCTTGGAGGTGTGAGAATAAAAGGGGAAGCAGCTAGCCACCATCGACACATGTCGATGAATGTATATATTGTTTACCCGC
CATATACAAGTTTTTCCTTCGTTCTTTTTTTT-GAGAGAGAGAGAGTCGACTAGGTGCTAGTGATGTACTTCCTTCGTCC
AGGAATACTTGTCGGAGAAATGGATGTATCTAGGCGTATTTTAGTTTTAGATAGATTCATTTTTATTCATTTCTCCGACA
AGTATTTTCAGACGGAGGAAGTACAAATCTAGGAGTTTCGTGTAAATTGAGCCATTTTGTACTTTTATACATCATGGGTT
CGTGTGCCAGTATTTCCCCACACACACAGAGCGCGCGCGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTGACTTTTA---GGGGTGGCAGCCGATCACCGTAGTCTACGGACGG
TTGCCCCATGAAGCATAGGTTGTAGGTGGTAGCGGCTGGTGGTATGTCAATGGTGAACCTGGAAGGTGGTGTTGGTCGAC
CATGTCTAGGGGCAGGGGGAGCGGTCAGAAGTCAGGGTGGTGGCCTTGATTGAGTTTAACAACGCCATGGTTGTGT----
-----
>SNPs
S-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS------------------------------------------------------------
-----------------S--------------------------------------------------------------
------------------S-----------------S---------------------------------S---------
--------------------------------------------------------------------------------
------------SSSSSSSSSS--------------------------------SSSS----------------------
------S----------SSSSSS-------S--------S----------------------------------------
---------------S--------------S-------------------S----------SS--S-S-SSS--------
----------S----------------------------------------------------SSSS-------------
-----------------------------------------------------S-------------------------S
--------------------------------------------------------------------SSSSSSSSSSS-
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-S-S--------SSSSSSS---------------------------------------SS--------------------
------------S------------------------------------------------------S------------
S-------------------------------------------------------------S------S----------
------------S------------S----------------------S--------------S----------------
-------------------S----SSS--S--------------------S-----------------------------
--------S------S-S----S---SSS--------------------------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S----
--------------S-------------------------------------S-S-------------------------
-------------------S-------------------S----------------------------------------
------------------------------------------------------S-------------------------
-----------S-----S--------------------S-----------------------------S-S---------
----S-------------------------S---------------S-------S---------------S---------
-------------------------S------------S--S----S--------------S---------S--------
----S-------S------S-S-------------------------------------SS------------S------
-S---------S----------S-----S---S-------------------------------S---S------SS---
-----------S----S---------------------S---------S-S-----------------------------
-------S--------S-----SSS--SS--S------------------------------------------------
------------S----S------S----S------------------SSS--SSSSSSSSSS-----------------
--------S-----S---S-SS-S-S-----SS-----------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S-------SS-------S-SS-S----SSS---S------S--------
SS----S-------SSSSSSS-SSSSSSSS--SSSSSSSSSSS-------------------------------------
---------------------------------S---S---SSSSS--S-SS--S--S--SS-S-----S--------SS
----------------------------------SS----------------------------------------S---
----S-S-S--S-SSSS----S----S---S---S----------------------S------SSS---------SSSS
SSSSS
>forward_226
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----------------------------------------------ATCTTCTGTGGTCGCACGTT--------------
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>reverse_1902
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-------------------------------------------------------------AGCGGCGACAAGAAACCTA
A-------------------------------------------------------------------------------
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>forward_1856
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----------------------------------------------------------------------------AGAA
GCCCAAAGTCGACGAG----------------------------------------------------------------
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>reverse_3302
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---------------------GGGTCGGAAATCAAGGTGGT---------------------------------------
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