>input_sequence_62984
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-----------------------------------------------ATATATAAGCAGTGGATGCGGATCACTCGCCAC
TTAAGCTCCTTCTACCTGCGGTGAAGGAGAACTCAAAAAACCCAGCCGATC-AAGCCATGGCCATGAGGGCTCTCGCGCT
TTCCCCGTCCCAGAGCTCCTCATTTGGGCTCCACCAGAGTATGCCCTCCTTCAAGCCAAGCAGCACCAGTCCTGCTAGAT
CAGTCAGGGCCTATGCGAAAGCGGATGAGCAGGAGGAG---AAGAAGAAGGTGCCCAAGCAGTCCTTGTTTGGGAACATC
ACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGATGCGGAGCTGCTGTATGAGGCCAGGGATTCCATCAAAGA
TGAAGGAAGGATGACAAGGGAACAGGTATACATACATACACTGAACCGCCAATGGAAAAAAACAGTTTTGAACAAATGTT
TATTGAAAT-CTGCAAGTTTTCCTTATGCTGATGAATTTCTGGTTGGTATTTC-AATTCAGTATGCAGCCCTTCGGAGGA
AGATTGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTTGAAGGTGCCCTGTCCATACCCTCAGTCACAGATACAGAG
ATAACCTCATGTTTTGTCTACTCTTGATTTCTCAGGCAGTACAATATTTGTATACTAATGCTAGGCAGAATAAACTGTTA
GGATTAATATGACCTCATATTGTATAAGAATATTTTGTCTCACACCATTTTTTTTCTACCCATCCTTCCTCTGAGCAAAC
AACATGCAATAAATCATGTTACTGAATGCTGACCAAATAATTTGTTTCTGAAAATACAGTTGACGGTGAATACGTGGAGG
AAGGTTGGGTGGACAAGACCTGCAAAGTTTGCAAGAAAGACACAAGAGGGGAGCCAAGGCAAGTTGACAATCTAGGAAGA
TATATGCATGTGGCGTGCGCAGAGAACTCGAAACCAACAAACTTCTTTTCCAAGCTCTTCGGCAGATGAACTTCTTTTGT
ACCATCAAACCCGTTGTTCGACTCATGGTTAG------------------------------------------------
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-
>chr3D_1_TraesCS3D01G339300
TCCTCCAAGGACTTCAAGCTGTGTCGGCTGGTGGTACTTGGCAGCATGGCGCTGAGGTGTATCAGTGGCGACCGCGACGT
GTTCAGCTGTTTGCGCGCAGGGAGGAGGTGCCGTTGGGCGCCATGGTGGCGTCGACGATAGCTGGACCGAGCAAGGTTGA
TGCATCAGTACAGTTCTGAAGATGGAGCGGTGGCAGTTGGCGGCGGCGGCCTCTGAGAGCACGCCGGACCAGTGTGTGTC
CCAGACCCGGCAAGTGGCTAGGTTGGGGTCTCGGGTCTTAGATGTTAGGCTTGGCTGCGATGTCTCGGGTCTTAGATGTT
AGGCTTGGCTGCGATGTCTCGGGTCTTAGATGTTAGGCTTGGCTGCGATGTCTCGGGTCTTAGATGTTAGGCTTGGCTGC
GATGTCTCTTTGGTATTAGGCCCAGGCTATCTGCGCCCCTTCATCAACTGGATAGGTGTAGCGACAGTTTGTTGCTTAGA
CGGCGGCTTTAGTCTTACTGTTGTATGACTTTGTAAGGTCTTGTGAGAATAATTAATAAAGTTGCCGTATGCATCGCCCA
GATGCAGAGGCCGGGGGTCATCCTCCTTTTCTAAAAAAAAATAGCATACGAATAAAAAAAGCTGACATACGTACCCACTT
AGGGGCTGCATGCATCACTCTGATGTAGAGGCCGGAGGTAGTCCTCTTTTTCTAAAAATAAAAAAATATATGCACTCACT
T-ACAATGGCCTGAGTTTTAATTATTTTTCCTGACTTTTAATTTCGTTCGTGGAGAAAATCCCTCCAC------AAATAT
TTCCTGTCTATACAGTCATCAACTAAACCAGCCACGCTGCCGCAACTCTTCCTGTCCAGTAGACAGAGCGCGCAACGCCG
TCCTCTCATCCGAAAACTCTGCTCTCGTTGCATCAGGCCTGGCTTGCACCACGCAGCCCTGTTAACCGCCACAGAACTGG
CCATGGCGTGCCCTTGCTTCGCTTGTGTGCACACCAAATGTTTCCACATATATAAGCAGTGGATGCGGATCACTCGCCAC
TTAAGCTCCTTCTACCTGCGGTGAAGGAGAACTCAAAAAACCCAGCCGATC-AAGCCATGGCCATGAGGGCTCTCGCGCT
TTCCCCGTCCCAGAGCTCCTCATTTGGGCTCCACCAGAGTATGCCCTCCTTCAAGCCAAGCAGCACCAGTCCTGCTAGAT
CAGTCAGGGCCTATGCGAAAGCGGATGAGCAGGAGGAG---AAGAAGAAGGTGCCCAAGCAGTCCTTGTTTGGGAACATC
ACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGATGCGGAGCTGCTGTATGAGGCCAGGGATTCCATCAAAGA
TGAAGGAAGGATGACAAGGGAACAGGTATACATACATACACTGAACCGCCAATGGAAAAAAACAGTTTTGAACAAATGTT
TATTGAAAT-CTGCAAGTTTTCCTTATGCTGATGAATTTCTGGTTGGTATTTC-AATTCAGTATGCAGCCCTTCGGAGGA
AGATTGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTTGAAGGTGCCCTGTCCATACCCTCAGTCACAGATACAGAG
ATAACCTCATGTTTTGTCTACTCTTGATTTCTCAGGCAGTACAATATTTGTATACTAATGCTAGGCAGAATAAACTGTTA
GGATTAATATGACCTCATATTGTATAAGAATATTTTGTCTCACACCATTTTTTTTCTACCCATCCTTCCTCTGAGCAAAC
AACATGCAATAAATCATGTTACTGAATGCTGACCAAATAATTTGTTTCTGAAAATACAGTTGACGGTGAATACGTGGAGG
AAGGTTGGGTGGACAAGACCTGCAAAGTTTGCAAGAAAGACACAAGAGGGGAGCCAAGGCAAGTTGACAATCTAGGAAGA
TATATGCATGTGGCGTGCGCAGAGAACTCGAAACCAACAAACTTCTTTTCCAAGCTCTTCGGCAGATGAACTTCTTTTGT
ACCATCAAACCCGTTGTTCGACTCATGGTTAGATAAATAGATGGATGCTATAACACCAAGGGATTAGGACAGTAATGTGT
AC------TGTGTTGTTCATGTGAAATGGTTTTTGATGAGCATATATACACATTCCATTATCCAATTTCGTTGGTATATC
AAGTAGCACATGAACAGAGGCCTGATTTATGGAGAAATAGATGAACCACTGATAACTATACATAATACTAGCACAATATT
CGACTACAAGTTAACATTATGGGGTATTATCTACTAGCAAGTGCTCCTCAACTCCTAGGCTGAATACAGGAGAAGCTTAA
CAGAAACTTTGGCCGACAGACTTACCATAGATCTAATTGATTCTGCTTACCTAATGGCTGTAATATGATGTGTTCAGAAG
TCCATTGCGTTAAGCTTACCCAGATAAACCCTGCATCTGATGACAGTGCACCCAATCTTAAACCCCGGCATGACTGTAAA
CCCAACACTGAACTTCTCTTCTCT---GATGATCTTGGCTGGAGTACTTTCCATGTGTTCCTTCCGAAACTGGACGCCAC
TCTTGACATAAAACATTTCAGCTTTGGGATTCAGAGAATGAGCAACTGCGAGTAGTGCCCATGTGTATCTTGCCATCCTC
ACAAATTTCTGGTAAAATGGCGTCCTTGGATGACCACCGCTCTCCACAAATGCTCTGTGATCCAAGTTTCCAAAGAAGGA
ATCCTCCATGCTCTGGGGCACAGCCACTAGATACTTTGCTCTGCAATATCTTCCGAAACTAGAATCTGGATCAGTCATGA
GAGCATCAAAAGGATCTTTGAAGCTCATGATACAGTCAACTGAATCCAGGGATGTATGGTCATCTCTGTCTGCCATAAGC
ATCACGCAAGCAAAATAGGCCTCAACAGCATACTTCTTGTCGGCCCTTCTCTCATATGCAACATGACTGTCGATTGGGGT
TGTCGATAGGCCGAGGTTCCACCCGGAAACTTTCGTCCAATCAAAGATGAACTTTGCAAAATCATGGATGCACTTCGACG
A
>chr3A_708
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-------------------------------------------------------------------ATATGTTCTCACT
TAACAGTGGCCTGAGTTTTAATTATTTTTCCTGAGTTTTAGTTTCGTTCCAGGAGAAAATCCCTCCAC------AAATA-
TTCCTGTCTATACAGTCATCAGCTAAACCAGCCACGCTGCCGCAACTCTTCCTGTCCAGTAGACACAGCGCGCAACGCCG
TCCTCTCATCTGAAAACTCTGCTCTCGTTGCATCAGGCCTGGCTTGCACCACGCAGCCCTGTTAACCGCCACAGAACTG-
CCATGGCGTGCCCTTGATTCGCTTGTGTGCACACCAAATGCTTCCACATATATAAGCAGTGGATGCGGATCACTCACCAA
CTACGCTTCTTCTACCTGCGGTGAAGGAGAACC---AACTACCAGCTGATCAAAGCCATGGCCATGAGGGCGCTCGCGCT
GTCCCCGGCCCAGAGCTCCTCGTTTGGGCTCCACCAGAGCATGCCCTCCTTCAAGCCAGGCAGCGCCAGTCCTGCTAGAT
CAGTTAGGGCCTATGCGAAAGCAGATGAGCAGGAGGAGGAGAAGAAGAAGGTGCCCAAGCAGTCCTTGTTTGGGAACATC
ACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTGCTGTATGAGGCCAGGGATTCCATCAAAGA
TGAAGGAAGGATGACAAGGGAACAGGTACATATAATCGATCACAAAATGCAC-------AA-CAATTTTGAACAATTTTT
ATAGTGAAACCTGCAAGTTTTCCTTATGCTGATGAACTTCTGGTTGGTGTTTC-AATTCAGTATGCAGCCCTTCGGAGGA
AGATTGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTTGAAGGTACCCTGTCCATACCCTCAGTCACAGATACAGAG
ATAACCTCATGTTTTGTCTACTCTTGATTTCTCAGGTAGTGCAATATTTGTACACCACTGCTAGGCATAATAAACTGCCA
GGATTAATATGACCTCATGTTGTATAAGAATATTTTGTCTCACACGATTTC--TTCTACCCGTCCTTCCTCTGAGCAAAC
AACATACAATAAATCATGTTACTGAATGCTGACCAAATAATTTGTTTCTGAAAATACAGTTGACGGCGAATACGTGGAGG
AAGGTTGGGTGGACAAGACCTGCAAAGTTTGCAAGAAAGACACAAGAGGGGAGCCAAGGCAAGTTGACAATCTAGGAAGA
TATATGCATGTGGCGTGCGCAGAGAACTCGAAACCAACAAACTTCTTTTCCAAACTCTTCGGCAGATGAACTTCTTTTGT
ACCATCAGACCC--------ACTCATGGTTAGATAAATAGATGGATGCTATAACATCAAGGGATTAGGACAGTAATGTGT
AC------TGTGTTGTTCATGTGAAATGGTTTTTGATGAGCATTTATACACATTCCATTATCCAGTTTCGTTGGTATCTC
AAATAGCACACGAACAGAGGCCTGATTTATGGAGAAATAGATGAACCACTGAAAACTATACATAATACTAGCACAATATT
CTACTACAAGTTAACATTATGAGGTATTATCTACTAGATAGTGCTCCTCAACTCCTAGGCTGAATACAGGAGAAGCTTAA
CAGAAACTTTGGCTGACAGACTTACTATATAGCTATTTGATTCTGCTTACCTAATGGCTGCAATATGATGTGTTCAGAAG
TCCATTGCGTTAAGCTTACACAAATAAACAATGCATCTGATGACAGTGCACCCAATCTTAAACCCCGGCATGACCGTAAA
CCCAACACTGAACTTCTCCTCTTCTCCGATAACCTTGGCTGGCGTACTTTCCATGTGCTCCTTCCGAAACTGAACACCAG
TCTTGACATAAAACATTTCAGCTCTTGGATTCAGAGCACGAGCAACTGCGAGTAGTGCCCATGTATACCTTGCCATCCTC
ACAAATTTCTGGTAAAATGGCGTCCTTGGATGGCTGCCGCCCTCGACAAATGCTCTGTGATCCAAGTTTCCAAAGAAGGA
ATCCTCCATGCTCTGGGGCACAGCCACTAGATACTTTGCTCTGCAATATCTCCCGAAACTAGAATCTGGATCAGTCATGA
GAGCGTCAAATGGATCTTTGAAGCTCATGATACAGTCAACTGAATCCAGGGGTGTATGGTCATCTCTGTCTGCCATAAGC
ATCACGCAAGCAAAATAGGCCTCAACAGCATACTTCTTGTCAGCCCTTCTCTCATATGCAACTTGACTGTCGATTGCAAA
TGTGGATAGGCCGAGGTTCCATCCGGAAACTTTTGTCCAATCAAAGATGAATTTTGCAAAATCATGGATGCACTTCGACG
A
>chr3B_771
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---------------------------------------------------GGAGAAAATCCCTCCACTCCACAAAATA-
TTCATGTCTATACAGTCATCAACCGAACCAGCCACGCCGCCGCAACTCTTCCTGTCCAGTAGACAGAGCGCGCAACGCCG
TCCTCTCATCCGAAAACCCTGCTCTAGTTGCGTCAGGCCTGGCTTGCACCACGCAGCCCTGTTAACCGCCACAGAACTG-
CCATGGCGTCCCGTTGCT-------TGTGCACGCCAAATGCCTCTACATATATAAGCACTGGATGCGGATCACTCACCAA
CTACGCTTCTTCTACCTACGGTGAAGGAGAACC---AACAACCAGCTGATCAAAGCCATGGCCATGAGGGCGCTCGCGCT
GTCCCCGTCCCAGAGCTCCTCATTTGGGCTCCACCAGAGCATGCCCTCCTTCAAGCCAAGCAGCGCCAGCCCTGCTAGAC
CAGTCAGGGCCTATGCGAAAGCAGATGAGCAGGAGGAGGAGAAGAAGAAGGTGCCCAAGCAGTCCTTGTTTGGGAACATC
ACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTGCTGTATGAGGCCAGGGATTCCATCAAAGA
TGAAGGAAGGATGACAAGGGAGCAGGTATGCATACATACACTGAACCGCCAATGGAAAAAA-CAATTTTGAACAAATGTT
CAGCGAAAT-CTGCAAGTTTTTCTTATGCTGATGAATTTCTGGTTGGTATTTCAAATTCAGTATGCAGCCCTTCGGAGGA
AGATTGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTTGAAGGTACCCTGCCTATACCC----TCACAGATACAGAG
ATGACCTCATGTTTTATCTA---TTGATTTCTCAGGCAGTACAATATTTGTATACTACTGC-----AGCATAAACTGTTG
GGATTAATATGACCTCACATTGTATAAGAATATTTTGTCTCACACGATTT--TTTCTACCCGACCTTCCTCTGAGCAAAC
AACATACAATAAATCATGTTACTGAATGCTGACCAAATAATTTGTTTCTGAAAATACAGTTGACGGAGAATACGTGGAGG
AAGGTTGGGTGGACAAGACCTGCAAAGTTTGCAAGAAAGACACAAGAGGGGAGCCAAGGCAAGTTGACAATCTCGGAAGA
TATATGCATGTGGCGTGCGCAGAGAACTCGAAACCAACAAACTTCTTTTCCAAGCTCTTCAGCAGATGAACTTCTTTTGT
ACCAACAAACCCGTTGTTCGGCTCATGGTTAGATAAAT-GATGGATGCTATAACATCAAGGGATTAGGACAGTGATGTGA
TGTGTGCTTGTGTTGTTCATGCAAAATGGTTTTTGATGAGCATGCC--CACATTCCATTATCCAATTTCGTTGGTATATC
AAGTAGCACATGAACAGAGGCCTGATTTATGGAGAAATAGATGAACCACTGAAAACTATACATAATACTAGCACAATATT
CTACTACAAGTTAACATTATGAGGTATTATCTACTAGGTAGTGCTCCTCAACTCCTAGGCTGAATACAGGAGAAGCTTAA
CAGAAACTTTGTCCGACAGACTTACTATAAGCTAATTGCT---TGCTTACCTAATGGTTGTCATATGATGTGTTCAGAAG
TCCATGGCATTAAGCTTACTCAAGTAAACCCTGCATTTGATGACGGTGCACCCGATCTTAAACCCCGGCATGACTGTAAA
CCCAACATTGAACTTCTCTTCTCT---GATAATCTTGGCTGGAGTACTTTCCATGTGTTCCTTCCGAAACTGAACACCAC
TCTTGACATAAAACATTTCAGCTCTGGGATTCAGAGAACGAGCAACTGCGAGTAGTGCCCATGTATATCTTGCCATCCTC
ACAAATTTCTGGTAAAATGGCGTCCTTGGATGACCGCCGCTCTCTACAAATGCTCTGTGATCCAAGTTCCCGAAGAAGGA
ATCCTCCATGCTCTGGGGCACAGCCACTAGATACTTTGCTCTGCAATATCTCCCGAAACTGGAATCTGGATCAGTCATGA
GAGCGTCAAATGGATCTTTGAAGCTCATGATACAGTCAACTGAATCCAGGGATGTATGGTCATCTCTGTCTGCCATAAGC
ATCACACAAGCAAAATAGGCCTCAACAGCATACTTCTTGTCAGCCCTTCTCTCACATGCAACTTGACTGTCGATTGCAAA
TGTGGATAGGCCGAGGTTCCATCCGGAAACTTTTGTCCAATCAAAGATGAATTTTGCAAAATCATGGATGCACTTTGACG
A
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SS------
-----S----------------------------S-----S--------SS----------------------------S
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
----------------------------------------S----------------------------------S---S
S--S---S------------------------SSSS--S-S-----S------------------------S--------
S--------------------------------------S------------------------S---------------
----------------------S---------------------------------------------------------
-----------------------------------------S--------------------------------------
-------------------------------------------------------------S--S---------------
S-SS----------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
---------------------------------------------------------S----------------------
---------------------------------------------S----SS---------S------------------
-----S------------------------------------------------------------S-------------
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-------------------------------------------------------S------------------------
-------------------------------------------S------------------------------------
----------------------------------------------------S---------------------------
-S-------------------S---------------SS-----------------------------------------
-------------------------S---S-S---S--------------------------------------------
-------------------S--S---------------------------------------------------------
------------------------------S-----------------------------------------S--S----
-----------------------S--------------S-------------------------S---------------
-----------------------------------S--------S-----------------------------------
---------------------------------------------------S----------------------------
----S-----S---------------------------------------------------------------------
-----------------------------------------S--------------------S-------------SSSS
---S-----------------S-----------S-----------------S----------------------------
-
>forward_27
-------AGGACTTCAAGCTGTGTCGG-----------------------------------------------------
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>reverse_1076
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-----------------------------------AAAAACCCAGCCGATCAAGC-------------------------
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>forward_161
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-------------------------------------------------------------CTGGACCGAGCAAGGTTGA
T-------------------------------------------------------------------------------
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>reverse_1087
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----------------------------------------------CGATCAAGCCATGGCCATGA--------------
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>forward_491
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-----------------------------------------------------------------------TTGCTTAGA
CGGCGGCTTTA---------------------------------------------------------------------
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>reverse_1568
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-----------------------------------------------GCCCTGTCCATACCCTCAGT-------------
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>forward_1160
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--------------------CATTTGGGCTCCACCAGAGT----------------------------------------
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>reverse_2959
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------------------------------------------------------------------------------GT
TGTCGATAGGCCGAGGTT--------------------------------------------------------------
-
