>input_sequence_62976
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-------------------GCCCCAACACCAG--GAGAGAGCTCGCTGCCGCACTGCTCTGCTCTAG---------TAGA
AGGTCGAT-------------------------------CGGCATGGGGAGGTCGCCGTGCTGCGAGAAGGAGCACACCA
ACAAGGGGGCGTGGACCAAGGAGGAGGACCAGCGGCTGATCGCCTACATCAGGGTCAACGGCGAGGGCTGCTGGCGCTCG
CTGCCCAAGGCGGCCGGCCTGCTGCGGTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGGCCCGACCTCAA
GCGCGGCAACTTCACCGACGACGAGGACGAGCTCATCATCCGCCTCCACAGCCTCCTCGGCAACAAGTAAGTCGC-----
-------CACTACCCATCGG--------CCTCGTCGACGT-----GCCTTCGG---ATACAGTAGTATGACTTCTTTGCT
GACAACGGGAATGCTCGCTGGTGAAGGTGGTCTCTGATCGCCGGGCAGCTGCCGGGCAGGACGGACAACGAGATCAAGAA
CTACTGGAACACGCACATCAAGCGCAAGCTCCTCTCCCGCGGCATGGACCCCCATACTCACCGCCCGCTCACGCCCGTCG
A---CGGCGCCGCGGCGTCCCGCCCGGCACACATAGCTGTGCCAGCGAGGGCAGCGCCACCCACGATGTTCGCCCCCCTG
ACGACGAAGCAGCCTCCCA---TGGA---------------GTCGTCGTCCGACGACGGCAGCAGCGGCGCGACGAGCAC
GGGGGA---GCCGCGGTGCCCCGACCTGAACCTCGACCTGTCAGTGGGCCCGCCGGCTGCCGACACGCCGACCTCGCACC
CGGTCTGCCTCTGCCGCCACCTCGGCCTCCGCGGCGGGGCGGTGTGCAGCTGCCGTCAGGCCGACAGCCCGGGCTCCCAG
GGGGGCGGGTTCAGATATTTCAGGCCGCTGGAGGAAGGCCAGTACATATGAGACGAGACAGGACGGCTAGGCCCTAGGCT
CCACAGCAATTTGTAAGACGGTGAATTTTTCCACCTCCACAGCACCACCGTCTCACAAAACGGTGAAA------------
GAATATCTAATCTGTTCATAATAT--------------------------------------------------------
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>chr1D_1_TraesCS1D01G268900
CCACCTACCTGGAATTCGGAAGATTCTTGCCTTGGCTTGAATTGACATTCTAGTAGTATTTTTTTGGGTGCGGCTAGAAA
TCAGCCAGCTGAAAATTTCGTTTGAGG-----------------ACCGTTGAATGCGAAATCAATGGCCCATGCTCTTTC
TTCAACCTATCGA-------------------CGCCAGCCACCACCGGCCTAACCGCCGGGCCCCGCCGCCCGCGGCCGG
TGGCGCTCCCGTGCCGCCTCGCCTCCCCACCTTCTCTGGAACCACTCCCCATCGCCGGTCCTCCGCCGCCCCGGCCATCC
CTCTAGGG------------CCCTTGCCCTGAGCTTTTTCTCCGGCAAATCCCCACACACCGTCGCCCCCCGCCCCGAAC
CCTAAGATAGATACTCGGGTGATGACGGCGAGCTTCTTCCTTCTCTCCGGGGAGGCCCTCCCTTGTCCTTCCTTCATTCA
AAAATCGACTGACGCCGAATCCGAGAATCACCTGACTGATGTGTTGCTAAACTGTATTTCTTTTGCATTTACGGGTGTGT
TTGTTGTGCTGTAGAGTCGTACTGTACCAGCTCTATATGAGTGTATGTATGCCACTGTTCGCTGGTCAATGGGTTCCGTA
TTTCTACCCGTCTAACAGGGAGTACAA------TAGTACTCTACGGAGCACCAACTTCTACTAAACCTAGCTAACTCATA
AAGGCGAACATCTTCCAACTGTACCCGCACCCTGCAGCGACGTCTGTTGATTCGTG--ATTAAAAATGCCCAGCCAACTC
TGCCTACCAAACTCAAAACTGTAGCGGTACGTGCCAAGTACGGGAGGGG--CGGGAACAAAAAACACGCGGGCTCCACCG
CCGCAACCGCACCGCCTCCCTCCCTTCCGCAACCACCACCCAACCCAACCCACCCCACCCCACCTCGCCCCCCGTCAAAC
TCACTACATGCTGCCGAGTCAATGCGGGCAGCGAAAAAGGGCGCGCGCAACCAACACACACACC-CCGCCATATATACCG
CTCCGCCTCCGCTCTCCCCGCCCCAACACCAG--GAGAGAGCTCGCTGCCGCACTGCTCTGCTCTAG---------TAGA
AGGTCGAT-------------------------------CGGCATGGGGAGGTCGCCGTGCTGCGAGAAGGAGCACACCA
ACAAGGGGGCGTGGACCAAGGAGGAGGACCAGCGGCTGATCGCCTACATCAGGGTCAACGGCGAGGGCTGCTGGCGCTCG
CTGCCCAAGGCGGCCGGCCTGCTGCGGTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGGCCCGACCTCAA
GCGCGGCAACTTCACCGACGACGAGGACGAGCTCATCATCCGCCTCCACAGCCTCCTCGGCAACAAGTAAGTCGC-----
-------CACTACCCATCGG--------CCTCGTCGACGT-----GCCTTCGG---ATACAGTAGTATGACTTCTTTGCT
GACAACGGGAATGCTCGCTGGTGAAGGTGGTCTCTGATCGCCGGGCAGCTGCCGGGCAGGACGGACAACGAGATCAAGAA
CTACTGGAACACGCACATCAAGCGCAAGCTCCTCTCCCGCGGCATGGACCCCCATACTCACCGCCCGCTCACGCCCGTCG
A---CGGCGCCGCGGCGTCCCGCCCGGCACACATAGCTGTGCCAGCGAGGGCAGCGCCACCCACGATGTTCGCCCCCCTG
ACGACGAAGCAGCCTCCCA---TGGA---------------GTCGTCGTCCGACGACGGCAGCAGCGGCGCGACGAGCAC
GGGGGA---GCCGCGGTGCCCCGACCTGAACCTCGACCTGTCAGTGGGCCCGCCGGCTGCCGACACGCCGACCTCGCACC
CGGTCTGCCTCTGCCGCCACCTCGGCCTCCGCGGCGGGGCGGTGTGCAGCTGCCGTCAGGCCGACAGCCCGGGCTCCCAG
GGGGGCGGGTTCAGATATTTCAGGCCGCTGGAGGAAGGCCAGTACATATGAGACGAGACAGGACGGCTAGGCCCTAGGCT
CCACAGCAATTTGTAAGACGGTGAATTTTTCCACCTCCACAGCACCACCGTCTCACAAAACGGTGAAA------------
GAATATCTAATCTGTTCATAATATTTCAACCATGAAT--------ATTTGTCCTCTCTGTCCCTA---------------
--------------ATTTTGTATCGTTGGTTGGTGCTGCTGTGCTGTGA--AAAAAACGAGGGGATAATGTGACAAAGGT
TGGTGTGTGTTTTTTGTGG-AAAAAGGGAGTAGCTGATGTGAGGTAGCGGGCACATTATTGTTTCGGGCATCAGATTCCG
GTGTTCCTTTCCTGTGCAGTTTTGGTCGTGTGGATGGATGTTGCGCAGGGCAATCATGTGGTGTGTTTTTCTGGTAGGTA
TTTCGGCTTGTCTGTGTTTGCACTCCACGAATTCTTCAGTTGGCAGGGAGTTAGGCAGTGGAGAAACTCGTATGGCCAAA
CTATGCTATTCTATTTTCAGGTTTGGTGCCTTGGGGAATGCGGTTCTTCTGACCGTGAGAGATTTTATGCTTAAACTTTC
ATTTGGATTGGTTATAAAGAAGTGAAATGGAAGCATTTCGAAGAACTAC----------------------------TAG
G-------------------------------------------------------------------------------
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---------------------------AGATGGTCTTGAAAGCAAAACAAGCTGACTAGACTGGCCAGAATCTGCATGAG
ACGAGATCGAGTAAGCAAGCATTTGTGTGTGCCTGCCTTGTCTGTTTGGTAGCCGAATCTTACATGGT------ACCGAG
GGAAAAGCGCTTTACAGCCCAGAAAGCGGGAAAGGCGGAGACTGTCCTGCGCCGATACAAAGCCCTCATCAGCAGATCGG
AACACTGATCCTGAACTGGTAGCAGAAGTT--------------------------------------------------
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----------------------------GGTGGACGGATTTGGTGCAGTGCTGCTGGCGCTCGCTTCTTC----------
--------------------------------------------------------------TTCTTTTGTTTTGTTTTC
TGGGAAGAAGAAGCGCCGGCCTCCCGTTCTGGTATTCTTTGCTTGCGCGCCAAATATGCGAGCCCTGGTGGCCTTTGCAT
ACGTACATCTGAATA---TACAATCGAGCGCACTTCGACATCGTAGCTGAACAGGAGCTGCAATCATGGGCGGCCACTAG
AATGTGATCGGGTCAAAGGCGAAATTTTTCGTCGTTTCGAATAACAAGTCAGTGGAGACGGAGCTGGACGCGCCGAG
>chr1B_1
CCACCTACGTGGAATTCGGAAGATTCTTGTCTTGGCTTGAATTGACATTCTAGTAGTATTTCTTTGGGTGCGGCTAGAAA
CCAGCCAGCTAAAAAATTTGGTTTGAGGTCAGTCGATTATGTGAACCGTTGGATGCGAAATCAATGACCCACGGTCTTTC
TTCAACCTTCCGACCCATCTTCTTTCTTGAGCCGTCAGCCACCACCGGCCTCACCGCCGGCCCCCGCTGCCT--------
---------------------------CGCCTTTTTCGGAACCAAGCCACACTGTCGGTCCTTCGCCGCCCTGGCCATCC
CTCTATACCACACCCCCCCCCCCCTGCGCTGAGCTTTTTCTCCGGCGAATCCCCACACCACCACCACCCTTGCCGAGAAC
CCAAAGATAGATACTCGGCTGATGACGGCGAGCCCCTTGCTTCTCTCCGGCGAGGCCCTCCCTTCTCATTCCTTCATTCA
AAAATCGACTGGTGCCGAATCCGAAAATCACCTGACTGATGTGTGGCTAAAATGTATTTCTTTTGCATTTACGGATGTGT
TTGTTGTGCTGTATACTCGTACTGTACCAGCTCTATATGAGTGTATGTATGCTACTGTTCGCCGGTCAATGGGTTCCGTA
TTTCTACCCATCTAACAGGGAGTACAA------TAGTACTCTACGGAGCACCAACTTCTACTAAACCTAGCTAGCTCTTA
AAGGCGAACATCTTCCAACCGTACCCGCACCTTGCAGCGACGTGTGTGGATTGTGATTATTAAAAATGCCCAGCGAACTC
TGCCTACCAAACTCAAA-CTGTAGCGGTACGTGCCAAGTACGAGAGGGGGGCTGGAACCAAAAACACGCGGGCTCCACCG
CCGCAACCGCACCGCCTCCCTCCCTCCCGCAACCACCACCCAACCCAACCCACCCCACCACG------CCCCCGTCAAAC
TCACTACATGCTGCCGAGTCAATGCGGACAGAGAAAAAGGCC------AACCAACACACACACCA-CGCCATATATACCG
CTCCGCCTCCGCTCTCCC-GCCTCAGAAACAG--GAGAGAGCTCGCTTCCTCCCTGCCCTGCCCTGCCCTGCTCTAGCAC
CGGCCTGAGCTCGCGCGTGGTGTTACTGCTGAGTTTGGCCGGAATGGGGCGGTCGCCGTGCTGCGAGAAGGAGCACACCA
ACAAGGGGGCCTGGACCAAGGAGGAGGACCAGCGGCTGGTCGCCTACATCAGGGCCAACGGCGAGGGCTGCTGGCGCTCG
CTGCCCAAGGCGGCCGGCCTGCTCCGCTGCGGCAAGAGCTGCCGCCTGCGCTGGATGAACTACCTCCGTCCCGACCTCAA
GCGCGGCAACTTCACCGACGACGAGGACGAGCTCATCATCCGCCTCCACAGCCTCCTCGGCAACAAGTAAGTCGCT----
---------CTACCCATCGG--------CCTCGTCGACGT-----GCCTTCTTCGTATACAGCAGTATGACTTCTTTGCT
GACGACGGGAATGCTCGCTCGTGCAGGTGGTCTCTGATCGCCGGGCAGCTGCCGGGCAGGACGGACAACGAGATCAAGAA
CTACTGGAACACGCACATCAAGCGCAAGCTCCTGTCCCGCGGCATGGACCCCCACACGCACCGCCCGCTCACGGCCGTCG
A---CGGCGGCGCGGCATCCCGCCCTGCACACATAGCAGTGCCGGCGAGGGCAGCGCCACCCACGATGTTCGCCC---TG
CCGACAAAGCAGCCGCCGGTCGTGGA---------------GTCGTCGTCCGACGACGGCAGCAGCGGCGCGACGAGCAC
GGGGGA---ACCACGGTGCCCCGACCTAAACCTCGACCTGTCGGTGGGCCCGCCGGCGGCCGACACGCCGACCTCGCACC
CGGTCTGCCTCTGCCGCCACCTCGGCTTCCGCGGCGGGGAGGCATGCAGCTGCCGTCAGGCCGACAGCCCGGGCTCCCAG
GGGGGCGGGTTCAGATATTTCAGGCCGTTGGAGGAAGGCCAGTACATATGAGACGAGACGAGACGGCTAGGCCCTAGGCT
CCACAGCAATTTGCAAGACGGTGAATTTTTCCACCTCCACAGCACCACCGTCTCACAAAACGGTGAAAAAAACGGTGAAA
GAATATCTAATCTGTTCATAGTATTTCAACCATGAAT--------ATTTGTCCTCTCTGTCCCTA---------------
--------------ATTTTGTATCGTTGGTTGGTGCTGTGTTTGGTG---GAAAAAACGAGGGGATAATGTGACAAAGGT
TGGTGTGTGTTTTTTGCGGAAAAAAGGGAGGACCTGATGTGAGGTAGCGGACACATTATTGTTTCGGGCATCAGATTCCG
GTGTTCCTTTCCTGTGCAGTTTCGGTCATGTGGATGGATGTTGCGCAAGGCAATCATGTGGTGTGTTTTTTGGGTAGGTA
TTTCGGCTTGTCTGTGTTTGCACTCCACGAATCCTTCAGTTAGCAGGGAGTTAGGCAGTGAAGAAACTCGTATGGCCAAA
CAATGCTATTCTATTCTCAAGTTTGGTGCCTTGGGGAATGCGGTTCTTCCAACCGTGAGAGATTTTATGCTTAAACTTTC
ATTTGGATTGGTTATAAAGAGGTGAAATGGAAGCATTTCGAAGAACTAT----------------------------TAG
GGCATCTTTAAGGTGGACACACAAACCTCCCGCAACCGTACAGATCGAGCTATCCGAACCGTGAAAACCATTCAACACCG
ACCTGTATCGGTCTGCCAGGCGATCCAGACAAGATTTCTCCCGTAAATTAGAGACAAAGTGGGTGAGCTTTGCGAGAGTT
CGGACAACCGAAACGTAGGAGCCGTTTGGATGGCGCCCGCAGTCGCCCTACCAACGCTTGGCGCGCCAACTATTTGGCGG
GAGATTTCGCCGCCGGCGAATCGCCCTGCATGAAAAACTGGATGTGGTGACCAAAAATTTGGCTAGATCCGAAATTTGGG
CAGCCACCAACGCTCGCCTGTGGCCTCAGTCAACGCCAAAATTTTGGCAGGGCTGTCGTTGGCTTCCATCCAAACGGCCC
CGTAGGACTTCAACACCCCTGGCCCACCCAATCCCCCCTTCTGGTCTCAGTTTCTTCCACTCCGCCCTTCTCTCCCTTGC
TTTCCATCTGCACCCTCCACCTCCACCGGCGGTGATGTATGTCTCTGGCCATTGCCGGACGTCCGGAACCAGCAGCGACG
CGCCTACGATGGAGCTGCCCACCCCAGAGCCATTTGTACCCAGGTATTTCGCCCTATGTCGACGACTTCCATGGCGGACA
CCACGCCCGACAGGTGTTTGGTCAAATGACATTGAGCTTATTTTTAAATGGTGTGTCGTTTTTAGAATATGAAGGATGGT
GAGCTACTCGACGATGGAAGATGAGTTGTTATGCGACGCGTGGCTGGCCGTATCCACGGATTTATAGGCGGGAGCAGAGG
GGAGCCCTCCTGAGAGCAAGTGCATGAAAAGATTCACGCACGAAAGCACATTGCGCCCTAAGACATGTACATCATTCAAC
CACGCAACTTGAGGTTGTTGTCGTATCGCTGGCAGGCTATTCAAGTCAGCATCATCAAGTTTTGCGACGTGGTTCGTCAG
CTCAAGGAAAGGTTATCATTGCACGCGGCAGAGGATGACATAGTAAGTTTTACTTCCTCTTGCTCTTGTTGATTGATTCA
TTCGTTCAATATTGGACTGTGCGTTATATGTAGCCTACATGTGCCGCCGTGGTGTACCACAGGACAGAGTGACGGGCATT
TACGTGCATACGTTGTTGGATGAAGCTGAAGGCGGGTATGTGTGAGAACGACATGATCCGTTCATGAAAAACTTATTGGA
CATGTGGGATCTAGTCGAGTTAGAGAGATTGTTGTACTAGACTTAATTTGCATGCTATGTATGGATGATTTGTGCTATTT
TCTATCCGAATTTAATGAATATCGTCCGGTTTGCATAAATTTCGTTCGATTAATTAAAATACAGTTTGAAATGTATGCAG
TTAGCGTTGGATAACATCCTCCTGTATCGAGTTCGCGGATTGATCGTCTCTGCCCGCGGACGGCTGCGAGAGAATTTTTG
CAGGTTGACTTTGAAGATGCCCTTCGAAGATCGTCTTGAAAGCAAAACAAGCTGACTAGACTGGCCAGAATCTGCATGAG
ACGAGATCGAGTAAGCAAGCATTTGTGTGTGCCTTCCTTGTCTGTTTGGTAGCCGAATCTTACATGGT------ACCGAG
GGAAAAGCGCTTTACAGCCCAGAAAGCGGGAAAGGCGGAGACTGTCCTGCGCCGATACAAAGCGCCCATCAGCACCTCGG
AACA------CTGAACTGGCAGCAGAAGTT--------------------------------------------------
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----------------------------GGTGGACGGATTTGGTGCAGTGCTGCGGCTCCTCCTTGGCCGTTGCCAGC--
---------------------ACACTTTGCATATCCAGAGCTCACGATCGAGTCGGCGCAATTTCTTTTGGTTTATTTTC
TGGAGTGAAGAAGCAGCAGCCTCCCGTTCTGGTATTCTTTGCTTGCGCGCCAAATATGCGAGCCCTGGTGGCCTTTGCGT
ACGTACGTCTGAATA---TACAATCGAGTGCACTTCGACATCGTAGCTGAGCAGGAGCTGCAATCATGGGCGGCCACTAG
AATGTGATCGGGTCAAAGGTGAAAGCTTCCGTCGCTTCGAATAACAAGTCAGTGGAGATGGAGCTG-----------
>chr1A_548
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-----------------------------------TATGGGTGTATGTATGCCACTGTGCGCCGGTCAATGGGTTCCGTA
TTTCTACCCGTCCAACAGGGAGTACACTAGTCGTAGTACTCTACGCAGCACCAACCTCTACTGAACCTAGCTGGCTCATA
AAGGCGGACATCCTCCACCCGTACCCGCACCCCGCAGCGACGTCTGTCGATTCGTG--ATTAAAAATGCCCAGCCAACCC
TGCCTACCAAACTCAAAGCTGTAGCGGTACGTGCCAAGTACGGGAGGAGGGCGGGAACAAAAAACACGCGGGCTCCACCG
CCGCAACCGCACCGCCTCC----CTCCCGCAACCACCACCCAACCCACCCCACCCCACCCCACCCCA-CCCCCGTCAAAC
TCACTACAAGCTGCCGAGTCAATGCGGGCAGCGAAAAAGGGC------AACCAACCCACACGCCACCGCCATATATACCG
CTCCGCCTCCGCTCTCCCCGCCTCAGAAGCAGGAGAGAGAGCTCGCTGCCGCCCTGCCCTGCCCTGCTCTAGAGTCTAGA
AGGTCGAC-------------------------------CGGCATGGGGAGGTCGCCGTGCTGCGAGAAGGAGCACACCA
ACAAGGGGGCGTGGACCAAGGAGGAGGACCAGCGGCTGATCGCCTACATCAGGGCCAACGGCGAGGGCTGCTGGCGCTCG
CTGCCCAAGGCGGCGGGCCTGCTGCGGTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCCCCGACCTCAA
GCGCGGCAACTTCACCGACGAGGAAGACGAGCTCATCATCCGCCTCCACAGCCTCCTCGGCAACAAGTAAGCCGCT----
---------CTACCCTTCGATCGATCAACCTCGCCGACGT-----GCTCGTCCTGTATA---TAGTGCGACTTCTTTGCT
GACGACGGGAATGCTCGCTCGTGAAGGTGGTCGCTGATCGCCGGCCAGCTGCCGGGCCGGACGGACAACGAGATCAAGAA
CTACTGGAACACGCACATCAAGCGCAAGCTCCTCTCCCGCGGCATGGACCCCCACACGCACCGCCCGCTCACCGCCGTCG
ACGGCGGCGCCGCGTCGTCCCGCCCGGCACACATCGCAGTGCCGGCGAGGGCAGCGCCGCCCACGATGTTCGCCC---TG
CCAACAAAGCAGCCTCCCGTGGAT------------------TCCTCCTCCTCCGACGGCAGCAGCGGCGCGACGAGCAC
GGGGGA---GCCGCGATGCCCCGACCTGAACCTGGACCTGTCGGTAGGCCCGCCGGCGGCCGACACGCCGACCTCGCACC
CCGTCTGCCTCTGCCGCCACCTCGGCCTCCGAGGCGGGGCGGCGTGCAGCTGCCGCCAGGGCGACAGCCCGGGCTCCCAG
GGGGGCGGGTTCAGATATTTCAGGCCGCTGGAGGAAGGCCAGTACATATGAGACGAGACGGGACGGCTAGGCCCTAGGCT
CCACAGCAATTTGTAAGACGGCGAATTTTTCCACCTCCGCAGCACCACTGTCCAACG------------AAACGGTGAAG
AAAAATCTAATCTGTTCATATTTTCCTTGTACGCCAAACCCACGAATTTGTCCTCTCTCTCTCTCACACACACACAGACG
CAAAATGGAGTACTATCTTTTATTCTTGGTTGGTGCCGGTTGTGTTGGGTGAAAAAACGAGGGGATAATGTGACAAAGGT
TGGTGCGTGTTTTTTGTGGAAAAAAGGGAGGAGCTGATGTGAGGTAGCGGGCACATTATTGTTTCGGGCATCAGATTCCG
GTGTTCCTTTCCTGTGCGGTTTTGGTCGTGTGGATGGATGTTGCGCAAGGCAATCATGTGGTGTGTTTTTTCGGTAGGTA
TTTCGGCTTGTCCGTGTTTGCACTCCACGAATTCTTCAGTTGGCAGGGAGTTAGGCAGTGAAGAAACTCGTATGGCCAAA
CTATGCTGTTCTATTTCGGCTTGTCTGTG------------------TTTGCACTCCACAAATTCTGCGCTTCAAATGTT
TGCACGCATCAATCGATGAACATTGCTATATGCGCACCTTCAAGTTATGAAATGAAATCCGTGTGGGAATGTCAAGGTAG
G-------------------------------------------------------------------------------
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---------------------------AGATGGTCTTGAAAGCAATACAAGG----------------------------
-------TGAGTAAGCAGGCATTTGCGTGTGCCTGCGT----TGTTTGGTAGCCCAATCTTACATGGTACGTACACCGAG
GGAAAAGCGCTTTACAGCCCAGAAAGCGGGAAAGGCGGAGACTGTCCTGCGCCGAAACAAAGCGC------TCAGCTCCG
AACA------CTGAACTGGTAGCAGCAGTT--------------------------------------------------
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----------------------------GGTGG----ATTTGGTGCAGTGCAGCAGATGTAGTGAGT--------AGC--
---------------------ACACTTTGCATATCCAGAGCTCACA----GGTCGGCGCCATTTCTTTTGTTTTATTTTC
CCGGGCGAAGAAGCGGCAGCCTCCCGTTCTGGTATTCTTTGCTTGCGCGCCAAATATGCGAGCCTTTGCATATATAGAA-
--GTACATCTGAATACAGTACAATCGAGTGCACTTCGGCATCGTAGCTGAGCAGGAGCTGCGATCATGGGCGGCCAGTGG
AGTATGATCGGGTCAACGGCGAAAGCTTCCGTCGCTTCGAATAACAAGTCAGTGGAGACGGAGCTGGACGCGCCAAG
>chr3D_1058
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-------T-------------------------------CGGCATGGGGAGGTCGCCGTGCTGTGAGAAGGCGCACACCA
ACAAGGGCGCGTGGACCAAGGAGGAGGACCAGCGCCTGATCGGCTACATCAAGGCCCACGGCGAGGGCTGCTGGCGCTCG
CTGCCCAAGGCCGCGGGCCTGCTGCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGACCCGACCTCAA
GCGCGGCAACTTCACCGACGACGACGACGAGCTCATCATCAAGCTCCACGCCCTCCTCGGCAACAAGTAAGCACCCGATC
GCGATTTCAATGCGCATCGG--------CTCCTCCGTCCG-----TCCCTGGTTTCTGGGAGATGG---GCAGTTATTGA
CTGAAGCAGCGGTCGCCGTCGTGCAGGTGGTCGTTGATAGCGGGGCAGCTGCCGGGCCGGACGGACAACGAGATCAAGAA
CTACTGGAACACGCACATCAAGCGCAAGCTCCTCAACCGCGGCATGGACCCGCACACGCACCGCCCCATCAGCGCCGCCG
C---CGCCGCCAGCGG----------------------------------------------------------------
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>chr3A_1059
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---------------------------------------CGGCATGGGGAGGTCGCCGTGCTGCGAGAAGGCGCACACCA
ACAAGGGCGCGTGGACCAAGGAGGAGGACCAGCGCCTGATCGGCTACATCAAGGCGCACGGCGAGGGCTGCTGGCGCTCG
CTGCCCAAGGCCGCGGGCCTGCTGCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCCCCGACCTCAA
GCGCGGCAACTTCACCGACGACGACGACGAGCTCATCATCAAGCTCCACGCCCTCCTCGGCAACAAGTAAGCAACCGATC
GCGATTTCAATGCGCATCGC--------CTCCTCCGCCTCTTCTTTCCCTGGTGTCTTGGAGGAAGGAAGCAGTTATTGA
CTAAAGCAGCGGTCGCCGTCGTGCAGGTGGTCGTTGATAGCGGGGCAGCTGCCGGGCCGGACGGACAACGAGATCAAGAA
CTACTGGAACACGCACATCAAGCGCAAGCTCCTCAACCGCGGCATGGACCCGCACACGCACCGCCCCATCAGCGCCGCCA
G---CGGGCTCACCGCGTCCACCACCGCCCCCGTCTTCCCTTCCTCCC---CGGCGCCGGCGTCCAGGCTCGCCAGCGCG
CCTTTCGCCTTCCAGAGCAGCACCGTGAGCTTCGCGAGGCCGTCCCCGTCGGACGACGGGCACAGCAGCAGCGGCGGAAG
CAGCGACGCGCCGCGGTGCCCCGACCTGAACCTCGACCTG----------------------------------------
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>chr1D_2336
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------------------------------------------------------------GAGAAACTCGTATGGCCAAA
CTATGCTATTCTGTT---AGGTTTGGTGCCCTGGGAAATGCGGTTCTTCTGACCTTGAGAGATTTTATGCTTCAAATTTT
CATTAAGAGT----------------------------------------------------------------------
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-----------------------------------------GCAAAACAAGCTGAGTG----GGCCAGAATCTGCATGAG
ACGAGATTGAGTAAGCAAGCATTTGCGCGTGCCTGCGT----TGTTTGGTAGCCGAATCTTACATGGT------A-----
----AAGCGCTTTACAGCCC-------GGGAAAGGCGGACACTCTCCTGCGCCGATACAAAGCGCTCATCATCAGCTCGG
AACA------CTGAACTGGTAGCAGTAGTGTAGTTGGTGGACTGAGGCAAAGTCCAGCGTACATCCCAAACGGACGTCCA
TTTTGATCTGCTTTTATCCGTTTGGGACGGCAATGAAGTCGTCCCTGTCTATTTGGGGCCGTCCCCATGTCGGTGCGCCC
AACACGCGGTCGCACCTCAAATCATGTCCAGGGTGGACGTGATTAAAAAAATCGCAAAAACTAAAAAAAATGCTGAAAAA
AATTAAAAATAAACGCAAATATAAAACCATAATTAAACATCACGGCTCTCGAACGGCCCCGTTCCACCCGGTTGCATTGA
CATAATTAACATAAAAACAAAAGAAAAGCGTTGCTCGCGCACTCCTGCCGTGCCCGTTGATGCCGTGTCCGTCGCCGTCT
CCTCACGCGTCGCCGTTGTCGTCGTCACCAGTGAGGTCGATGTAGGGCGGCGGCGTCCAAAGGTGGGCTGGTCCCTGGAA
AGCGGGAGGCTACTGGAAGGTGAGAGGCGCCTGCACCATCTCACCCCGTGGCGACGTCTCGCGCTCCGATGACCGCGACG
GTGTAGGGCACCAGTTCACGGCCCCCACGCCGTCGGCCATGTCCGCGGCCGTGCACAACCAGCTCCACCGCTGGCCCACC
AAGCCCGGGTGGAATGCGGCGACAGGCAACTCCTCCAGCACCTCCACCCTCACCTCCTCCTTGACGTCCCTCATCTCCAG
CTCCGGCACGGCCACGTCGCCGGCCGCAGAGAGGGCAATCATGGTCTCCAGGCCCTCCCATTGGCGCTCATCGTGCGTGT
TCATGGAGTCTTCCATGACACGCTGAAGGAGTCGGGCCTCCTCCTCCTCTGTCATGCGAGGAGGTGGGTGGTGGCGACGG
AGAGGGCGGCGGCGACAGTGTCAGCGTGATGTCGCGCACCCGCGTACGCCCGCGCACGTGGGGAGGGCTCGAAGCACGCG
CGCGACGCTCACGTGGCCGCCGCGGCCCCGATGAAGTGCCGGCAAAGAATGACGCGCGCCGCGTGTCGTGGTCGTCCCGA
AACCACGTGTCCCAGAGGTCGGAGTCGACGGCGTACCTGGGGTCGTAGTAGAGGTCGTCTGGCAGGAGGAGACGGCGGCG
TTCGATCTCCTCGCGGCGCGCACGGCCGCTCGTCGGGACCGGCGGGATCGGCACCCGGTCGGCGGACAGATGCCAGTTAT
TAGGGAGGTGAACGTCGCTCCAGGGGAGCGGCGTCCTCGTCTCCCAATAACGAGGACAAACATCCACGTGGATGTACTGC
CGGTCACGCTCGCCGCCGGCCGTAGGGCCGATGATGAATGGGGCAGGCGCGGGAGCCCTCCGTGGGGCGTGCCATGGGGG
TGATGCGGGCTTTGCTTTGATGCCGCGGCCGCGGCGGCCCGAGGACGAGCCAGCCTCGTGGTCGTGCGCCCTCTTGCAGC
CGGTGTTCCACCACGCCATGGCTCTCGTTGGCCGGCGAGCTCGAGGAAGGGGAAGGGAGAGCTAGGGTTTGGTTGTCGGG
TTTCGAGGAGGCCGCGGCGACTGGAGTGGGAGCGTGGACTGCGACCAGTCCACGGCTTCCCATTTAAGACGGACGTCTAC
CACACGTCTGGGCGGATGACAGGTGGGGCCGACCGCGCGTGCGCATTATGTTAGGCGGTGAAAGGTAGGTGGCCGCTTGC
CATGCGGCCCCGACGCGGATGAGCGGCGCGTCCGTTTGCTGTCCGCCTGGACCCAAACCGAACGCATGTTTGCGCTCGAA
ACGGGTCAGGCTGGACATAAAACGGACAAGATGAATTCAGGCCGTCGCGCTGGCCGTAGGGTCTGTTCGTTTTGCCCTAA
ATGGACGGGGCCGGCGGGATGGGGTCGAGTTGGCCTGATTTGGCGCAGCGCTGCGGCCCCTCCTTTTGCTTCACACGTCC
TCCTTGCTAGCTAGTAGCAAGACATTTTGCATAGTCAGAGCTCACA----AGTCGGCGCCATTTCTTTTGTTTTATTTTG
TGGGGCGAAGAAGCGCCAGCCACCCGTTCTGGTATTCTTTGCTTGCGCGCCAAATATGCGAGCCCTGGTGGCCTTTGCAT
ACGTACATCTGAATA---GACAATCGAGTGCACTTCGACATCGTAGCTGAG-AGGAGCTGCAATCATGGGCGGCCACTAG
AATGTGTTCG-------------------------------------------------------------------
>SNPs
--------S--------------------S-------------------------------S------------------
S---------S----S--S-S--SSS-------------------------S--------------S----S-S------
--------SS------------------------S----------------S--------S------S---SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS-S----S-SS-------SS--S--SS-S-------S--------S--------
-----SSS---------------S---S------------------S-----------SS-SS-SS---SS---SS----
--S---------------S--------------SS---S-----------S-------------S--S------------
-----------SS-----------S-------------------S------S----------------------S-----
-------------S-S----------------------------------------------S-----------------
-------------------------------------------------------------------------S------
-------------------S---------------------------S--------------------------------
-----------------S--------------------------------------------------------------
-------------------------S--------------------------------------S-SS------------
------------------------------------------SSSSSS--------------------------------
----------------------S--SS-S-----------------------S----S----S--SS-------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
-------------------S------------------------------------------------------------
------------------------------------------------------S--S---------------S------
-------------------------------------S-----S-------------------------------S-S--
S----S--------------------------------------------------------------------------
------------------------------------------S--------------S----------------------
------------------------------------------S-------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------S-S-SS-SS-S-------------------------------
------------------------------S-------------------------------------------------
-----------------------------------------------S----------------------SS--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S---------------------------S-------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------S-----------S----
----SSSSSS----------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------S-S-----SS--SSSS----------
--------------------------------------------------------------------------S-----
----SS-----------S--------------------------------------------------------------
----------------------------S---------------------S-----------------------------
------------------------SS--S-----S---------------------------------------S--
>forward_285
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------CCCACCTTCTCTGGAACCAC-----------------------------------
--------------------------------------------------------------------------------
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>reverse_2448
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-----------------------------------------------GGGCAATCATGTGGTGTGTT-------------
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-----------------------------------------------------------------------------
