>input_sequence_62973
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ATGCTGCGCGACGGTTTCCGCACGATGGTCACCATAGGCA
GCGACGACTGCATCCGATCCGGCATGTGCGCCGTCGGCCGATATGAGTGGGAGATATGTGTATACCCTGCATGGACGGCG
GGCAGCCCCGATGGCGATAAGTGGGTGGCGCTGCGCCTTGTCTTGCTAAGCAAACCCAACACCCCTGCTGTGAGGGCCAA
TCTACGCTGCCAGGCGGTGAATCCAAATCTGTGGTACGAAACCCCAGTGAAGAAACAGCCGGGAGTATTCGGGCGTCCCA
AGAATTCTACACCGTTTGTTTACCTCGTCTCGGTGAGTGATGTTCAGAACAAGGGCTATCTCGCTGCCGATGCTTTGACC
GTGGAATGCACCATCACGGTGCTCAAGGAGTCGCCGGCGCCGACTTCTCCGGCGAAAGAGATGCCCGTGCCATCGTCCAA
CTTGCACAAGAACCTCGGTGATCTCCCGCAGACCGAGATGGGGGCAGATGTCACTTTTCTCGTATCTGATGAGTCTTTTG
CTGCGCATAAGAACATACTTGCCGCGAGATCCCCTGTTTTCAAGGCACAGTTTTTTGGAGAGATGAAGGAGAAGGTGTCT
CAAGATGTTGTGGTTGATGGTATGGAGGCAGCAGGCTTCAAGGCCATGCTTCACTTCATCTACACCGACACTGTGCCCGA
GCTTGAGCAAGGGCTCGAGGCGGTG------ATGGCTCAGCATCTTCTTGTGGCAGCTGACAGGTATGGACTGGACAAGC
TCAAGATGTTCTGTGAAAACAAGCTCTCCAGTGGCATCACCGTTGACACGGCGGCGACGACTTTGGCCTTGGCGGAGCAG
CACAATTGTTTACGTCTCAAGGCCAGCTGTGTCGAGTTCATCGTTAGCACACCTGAAGTTATTGACGCTGTCTTGGAGAC
GGAGGGGTATATGGATTTGGCTGCAAGCTGTTTTTTTGTGTGGGTAGGCTGCAAGCTGTTCTTCTGTGCTGGCAGATCTT
CTCAAGTCTACGCGTGGGAGAAATAA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr7D_1_TraesCS7D01G460000
ATCAGATTTCCTTGACTTGGCAGCAGGTAACTAGTTTATGCCCGAGCAGCAGAGAGCTGTAGAAAGGAAATTTGTGAAGG
CAAGCTCTCTGATGGAAATTTGTGAAGGCAAGCTTTCTTCATTTATTGCTTGCCACATCATCTATTTTATCTAGATATGT
GTGATGTTACTACCTATGTTACTCCCACTGTGGGTAGTCTTATGAGCAACTTACTGCTCGAGTTTGCACTCCAGTTCGAT
TTAATTCAGGGATAAATTATCCTAGATTCGGTATTCGTGTCCTTTGCTTGTCAAATATTGGCACAAGGTGATTAATACGT
GTGCCCAACTTGGTTGAGACTTGTGCTTTTTCAGTGATGTTAAGACTTGAGAGTAGGATGATTCAGAGTGTGCAGAAGCT
CAGCTCCAGCCACACCCAACACCTGAATCTGCGAAACCGCCATACTACTGTGTCTGATTTGTGCAGTTGTATACGTCCCA
CGGCATCCTGCGAGAATCTAGGCATAGCCGATGGTGGAAAGTTTTTTGTGTCATGTTTAGGTCATTCTTCCGTATCAGAT
TTATCTATGCAAAGCCTTGACAATGCTTGCTCTGTTTTTCAGGCAAAAAAGAAAATCGTTGATCGCTTGAGGCTTCTTAA
AAAAAAGCTGGATGTAACACATGCAATGGAAGCACAGGTACTAGTACTCCTGTTTTGAACGCTTGACAACATGTTCACCC
GACCCGAAGCGACCCAACAATTAATCCGGGCCATTACGACATCCATCCGTCGAGAAGGCCAACAGGTATAGTTTCTTCGT
ATTCTGCATTGACTGATCCTCGTCACCTGTTCGTTTCCATGGGTAATTAATCGACCAGGCCATGCACAACCGGGTGCTAT
AAATCTGCACCACCCCACGGTCTTCTCACACGGCAAAAAGATCTTCCGTCTCCAGCCTTTCTTAGTGAAAAAAATACAGT
GTCCACCCTCTCGCAATGGCATTGGGAGCCAGCATGACCGATGCTGCGCGACGGTTTCCGCACGATGGTCACCATAGGCA
GCGACGACTGCATCCGATCCGGCATGTGCGCCGTCGGCCGATATGAGTGGGAGATATGTGTATACCCTGCATGGACGGCG
GGCAGCCCCGATGGCGATAAGTGGGTGGCGCTGCGCCTTGTCTTGCTAAGCAAACCCAACACCCCTGCTGTGAGGGCCAA
TCTACGCTGCCAGGCGGTGAATCCAAATCTGTGGTACGAAACCCCAGTGAAGAAACAGCCGGGAGTATTCGGGCGTCCCA
AGAATTCTACACCGTTTGTTTACCTCGTCTCGGTGAGTGATGTTCAGAACAAGGGCTATCTCGCTGCCGATGCTTTGACC
GTGGAATGCACCATCACGGTGCTCAAGGAGTCGCCGGCGCCGACTTCTCCGGCGAAAGAGATGCCCGTGCCATCGTCCAA
CTTGCACAAGAACCTCGGTGATCTCCCGCAGACCGAGATGGGGGCAGATGTCACTTTTCTCGTATCTGATGAGTCTTTTG
CTGCGCATAAGAACATACTTGCCGCGAGATCCCCTGTTTTCAAGGCACAGTTTTTTGGAGAGATGAAGGAGAAGGTGTCT
CAAGATGTTGTGGTTGATGGTATGGAGGCAGCAGGCTTCAAGGCCATGCTTCACTTCATCTACACCGACACTGTGCCCGA
GCTTGAGCAAGGGCTCGAGGCGGTG------ATGGCTCAGCATCTTCTTGTGGCAGCTGACAGGTATGGACTGGACAAGC
TCAAGATGTTCTGTGAAAACAAGCTCTCCAGTGGCATCACCGTTGACACGGCGGCGACGACTTTGGCCTTGGCGGAGCAG
CACAATTGTTTACGTCTCAAGGCCAGCTGTGTCGAGTTCATCGTTAGCACACCTGAAGTTATTGACGCTGTCTTGGAGAC
GGAGGGGTATATGGATTTGGCTGCAAGCTGTTTTTTTGTGTGGGTAGGCTGCAAGCTGTTCTTCTGTGCTGGCAGATCTT
CTCAAGTCTACGCGTGGGAGAAATAATTGATGGGTTGCTGATGAATGTTTTGTACTAGTAACTTGTGTTTCCCTTTAATT
AGTGTGACGTAATTTACCGCTAAAATGTTCAGGATTGGCTATCTGTTTCTATGTGTGACAGTGTGAGTTCTTCTCTTTTG
GAATAAAACAGCTCCGCCTCCTGCGCCGTCTCTGCGGCAGGTGTTGGCAGAAAAAAAAGGGGGAGAATTATACCATTAGA
GCACTTTCTTTTAGATCCACCATTAGGGAACTCAGCGTTTTTTAAGAAAATTTAGGGTACTCAGCTGTGCGTTTCCACGT
CTCCAGGAAGAACAAAGCCCATTTACTTTTTCCCTATAATAACAAATCGCGCCTTGGGCCGTTTTCTTTAGCAATACGTA
CCAAAATTTTAGGTACATCTTGCAAAGAAAGTGAACCTCTTTTTAGAAACTACTCCTACATTGAAATACTTTGTTTAAGT
TAACTTTTCTTAGACCTCGAATCATCGACAATAGATTCAGAGAAGTATTTAAAAAAATATGTTCCACCATCAATAAAAAA
GGGAAATTTATATCCAATAAAATATAAATGCAAAATTCGTTCTGTTGGGGATCGTTGCAGAAATTAATTTTTTTTTCTAC
GCATCACCAAGATCAATCTATGGTGCTTACTAGCAACGAGAGGGGAGTGCATGTTCATATCTTTGAAGATCGCGATGCGG
AAGCGTTGCAAGAACGCAGTCGGTGGAGTCGTACACAAAGCGATTTAGATCTCGCCGAATCCGATCAAAGCACCGAACAA
CGGTGCCTCCGCGTTCAACACACGTGCAGCCCGGTGACGTCTCCCGCGCCTTGATCCAGCAAGGAGAGAGGGAGAGGTTG
GGGAAGACTCCGTCCAGCAGCAGCACGACGGCGTGGTGGTGGTGGAGGAGCGTGGCACTTCAGCAGGGCTTCGCCAAGCA
CTGCGAGAGACGAGGAGGGAGAGGGGTAGGGCTGCGCCAAGAGAGAGGGAGACTCGTGTCTCTGGC
>chr7B_1430
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CCGTCCTCCAA
CTTGCACCAGCATCTCGGTGAGCTCCTTCAGAGTGAGACGGGAGCCGATGTCAACTTTCTTGTCGGCAAAGAGTCTTTTG
CTGCGCATAAGAACATACTTGCCGCGAGGTCTCCGGTTTTCAATGCCCAGTTCTTCGGAGACATTAAAGACAAGTGTTCG
GCACGCGTGGAGATCGAGGACATGGAGGTGGCCGCATTCAGGGCCATGCTGCACTTCATCTACACCGACACGGTGCCCGA
GCTTGATCACCCGCTCCAGGAGGTGACAACAATGGCTCAGCATTTGCTTGCAGCCTCAGACAGGTACCAACTCGACAGGC
TCAAGCTGATTTGCGAAATAAAGCTCTCAGGCGGCATCACCGTCGACACCGCAGCCACAACTCTTGCCTTGGCAGAGCAG
CACAATTGCCTGAAGCTCAAGGCCAAATGTATCAAGTTCATCGTCAGCACTCCCGTGGTTCTTGGTGATGTGTTGGCGAC
CGAGGGGTATA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--S-----
-------S--S-S--------S----SS----SS----S---S--S-------SS-----S--SSSSS-S----------
----------------------------S--S--S--------S--S-----S--S-----S--S--S--S---SSS--S
SS-SSS--S-S-S-S--S-SS-------SS--S-SS----S---------S--------------------S--------
------S--SSS----S---S----------------------S-S----SS--SS-S--------SSS---S----S--
-----S--S-S--S----SS--------SS-S-----------S-----S--S--S--S---S-S--------S------
--------SS-SSSS----------SS---S--S----------S-----S--S-SS---S---SS-S---S----S---
S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_938
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AGATCTTCCGTCTCCAGCCT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_2774
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GCCGAATCCGATCAAAGCAC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
