>input_sequence_62969
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----------------------------------------------------------------ATGGCGGTCCCATCGT
CGTCCTTGTTGTCG---CTGCTGCTCCTCGCGCTCTTCCTGCATCATCATTGCTCCGCTGCCCAGGATCGCGGCAGCGCC
GCCGTCGTCGTCAACATCTCCGCCGTGGAGGACGTCGTCCGCGACCGCGCGTTCGAGCTGCTCCACCGCACCGACAAGCT
CGTGGGCGTGCCCCTCACGGCCTGCCCGTCGCCGTGCGGCCTCGTCGACGTCCAGGCCTCGGCGCTGCGCGTGCGGAGCA
GCTCCCTCTGGGACGACGGCGTCAACGCCACCGACGCCGCCGCCGGCACCGCGGGGTTCACCGTGCCGCCCCGCGTCGTG
CCGTCCCCGTTCGCCCGCCGCGTCGACGTCGTCTTTGAGCGGTTCCT---CGGCAACTCCTCCTCCGGCGCGCTCTTCGC
TGCGCCGCCCGGGTACGCGCTGGCCGCCCCCGTGGCCGCGCTGCTCGCGTACGACGTGTCGACCGGGAACAACGGCAGCA
GGGCCGTCGGGCTCCGGGCGCTCGGCGCGCCCGTCCGCGTGGAGTTCGGGGACCTCGCGCATGCGGCGGCGAACGGGACG
ACGCCGTTCAACGCCACGGCGGCGAGGTGCGTGACCTTCGCGGTGGAGAGCGGGAAGGCCAAGGCCGTGGCCACGCACGC
CATGGCGTCGGACACCGCGTGCACGGTGACCGGCACGGGCCACTACGGCGTGGCGGTGCGGCTGCAACCGCCACCGCCTT
CGCCGCCGCCGCCGCCGCCGCAGCCGCCTGCGGCGGTGAGGGAGCGGTGGTGGGCGTGGATGGCGGTGGCCGGCGTCGGC
GGGGTGGTGGTGGTGAGCTTCCTGGCGGCCACCGTGGTCGCGGCGGTGCGGTGGAGCAGGAGGCGCAGGAGGGAGGAGAT
GGACCTGCGGGCGCTCGCCGGGGAGGAGCTGGGGAGGATGGCGGTGCGGGGGAGCCGGATGCCGGCGGCGAAGATGGTGA
GGACGCGGCCAGAGCTGGAGGACGGGAGCCCGCTGGCGTGGCGGCGCTAG------------------------------
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>chr7A_1_TraesCS7A01G117800
CAAACATTAACATTTTTTGTACTTGTTCATTGTGGATCATGGCATTTTCGCATGAACGTTTGGAGGACTTCATTGTTCAG
AACAAATGTTTTGGACTGACTTATTTAAAGTTGTT-------TTTCTTTTTCCTG---AAAAAAGTTGTTTTTCTTTGGC
AAGTTCAATAATTCTTTCGAACGCATTTTCGCGTCCCCACTTTCGCTGGGAACCCAACATGCATTCTCAATTTATTTCGG
ATGATCCCTCAAAAATAAAATTTCAGATGGGACTAGAATGTTGCATATGTGCACTAATCATATGGCGCAAACCTCCAAAC
CCCTATTTCATTTTCTTCATCGTGAGAGATTGGCGCATACCTTCTTCTTCCTCATCCTCCTCGCCATGTCATTCTTTCCC
TCCTCCTCGATTTTTCGGTCTCACCAGCGTCAAGTCAAGGCATTGCCACATTGTCACTAGGTTGTCGTTGCCTCGTTAAC
GGTTTCGGTTAGCTCCCCTCCCTCTCCTCCTTCCTCGTTCTCCTTCCTTCACTCATGCTCTTC-TCCACTAGTTCGCGGA
AGCGTTAGCCACCAAGACTAGAGACTGAACGTTCGTATGATAAAATATTCCTCTAATCTCATCTTTAGGAGTTAATTTTC
TCTCTATAGTTTTACATGGCCCGTGTACATTCTTCTTAAACTCGATCTTT---TTCTAAATTTTAAAATCCTGTAAAACT
TGTTCATGGCACATAGAAATAAGTGTATGCGTGTCTGTGCGTCTGTATTGTGTTAAAAAAA-----GGATAATATAATGC
TGCATTTCATCTGAGTGCTGGTACTAATTAACAGCCAGCATCCCCCCTAAATATAGGAGATCATTTGCCTCCATTGGTGA
TTAACCTCTCGTAGCTCTGGCC---ACCTCCTCCGCTCGCTCCGTCCATCCGGCCCGCCG--TTCGAGCCCTCCGTCGAG
ATGGCGGCATCCTACCGCCGCCGCCACACGCCACGGCGCTAGCCCTCCAGAAAGAGAGGCAGCAATGGCGGTCCCATCGT
CGTCCTTGTTGTCG---CTGCTGCTCCTCGCGCTCTTCCTGCATCATCATTGCTCCGCTGCCCAGGATCGCGGCAGCGCC
GCCGTCGTCGTCAACATCTCCGCCGTGGAGGACGTCGTCCGCGACCGCGCGTTCGAGCTGCTCCACCGCACCGACAAGCT
CGTGGGCGTGCCCCTCACGGCCTGCCCGTCGCCGTGCGGCCTCGTCGACGTCCAGGCCTCGGCGCTGCGCGTGCGGAGCA
GCTCCCTCTGGGACGACGGCGTCAACGCCACCGACGCCGCCGCCGGCACCGCGGGGTTCACCGTGCCGCCCCGCGTCGTG
CCGTCCCCGTTCGCCCGCCGCGTCGACGTCGTCTTTGAGCGGTTCCT---CGGCAACTCCTCCTCCGGCGCGCTCTTCGC
TGCGCCGCCCGGGTACGCGCTGGCCGCCCCCGTGGCCGCGCTGCTCGCGTACGACGTGTCGACCGGGAACAACGGCAGCA
GGGCCGTCGGGCTCCGGGCGCTCGGCGCGCCCGTCCGCGTGGAGTTCGGGGACCTCGCGCATGCGGCGGCGAACGGGACG
ACGCCGTTCAACGCCACGGCGGCGAGGTGCGTGACCTTCGCGGTGGAGAGCGGGAAGGCCAAGGCCGTGGCCACGCACGC
CATGGCGTCGGACACCGCGTGCACGGTGACCGGCACGGGCCACTACGGCGTGGCGGTGCGGCTGCAACCGCCACCGCCTT
CGCCGCCGCCGCCGCCGCCGCAGCCGCCTGCGGCGGTGAGGGAGCGGTGGTGGGCGTGGATGGCGGTGGCCGGCGTCGGC
GGGGTGGTGGTGGTGAGCTTCCTGGCGGCCACCGTGGTCGCGGCGGTGCGGTGGAGCAGGAGGCGCAGGAGGGAGGAGAT
GGACCTGCGGGCGCTCGCCGGGGAGGAGCTGGGGAGGATGGCGGTGCGGGGGAGCCGGATGCCGGCGGCGAAGATGGTGA
GGACGCGGCCAGAGCTGGAGGACGGGAGCCCGCTGGCGTGGCGGCGCTAGCTCCTCCGCCGGTCGCACTGTCGCCGTCTG
GTTTAACTAGGTGTAG---TTTTTTTTCTCAGCATCAGATATTCAGACTTGTATTGTTGTTGTACATTATTACACACAGT
ACTTTGTAGTACTCTATATATGATATA------TTGTGTAAACTCGGATTAAAAATGTACATCGAAATAGGTC-------
ATCTTGGGAGCAACATCTCACTGCATGTTCTCTGAGGAC--TAGTAGCAGATTGCAATGGACTTTCTACTTCATTTC---
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--------------TACATATAATTTGCTCTTCTCAACTTCTGATGCTCCCTCCACTTCCAGTACAGAGCGAAACTCAAA
ATTGTGACCGAAATATAATGCCAATATGCACATTATTTGGTGTCACTAAATC----------------------------
------TACATACAAATTAT-----------------ATACATCATCATTTCTTCTCCTAACAAGTTCG-----------
---------AGCAGGGTTACAGATTTGAAGTTCTTCCCAATTACTGTAGACTTGTATGCTTGATTGCTGGAACGAGGAAC
TATTCTGGGATTTGCTCTGTTCAG-CTTCAGCGCTTGTGAAGAGCGGCAACGGTCAACAAATAATAAGCTAAACTGTAGT
ATATTACTCAAAATTTCAGGTAACAATACATAACTAAAAGAATCCAGGCAATTT-CTGGAAGATGGCACTGCATCTTCTT
CAGATTGCAAATAA--ATGAGCTCCTCTGGAGTATGACAAGAGATT----TTTCTTTCTGATCCAAACATGCCCGTTCCC
TGAAACTGGTTCTTGTACATCTCCAGAGAAACTGATTCTTGAACAGTAACGCACGTCATCAACGATCTCTCCTAACTGTT
TCAGTTCGATGTGTACGACGAGTACTCGTTCACCAGTTTGCGGAAGAGAGATCCTTCAGTTTCCATGAGCTTTATAGGTT
TGTCATACTCCACTACTCTCCCTGGAAGTGTTCATGTAGCTCATCAGTGTGGAATAAAAAACTCTATGATGCAGTCCTAA
TAAGTTGGCAGT---AATAAGACAAACATACCGTCATTCATTGCAAG
>chr7D_21
--------------------ACTTGTTCATTGTGGACCATGGCATTTTCGTGTGAACCTTTGGAGGACATCATTGTTCAG
AACAAATGTTTTGGACTGACTTATTTAAAGTTGTTAAAGTTGTTTTTTTTTCCTGCAAAAAAAAGTTGTTTTTCTTTGGC
AAGTTCAATAATTCTTTCGAACGCATTTTCGCGTCCTCACTTTCGCTGCGAACCCAACATGCATTCTCATTTTATTTCGG
ATGATCCCTCAAAAGAAAAAAATTGGATGGGACTAGAATGTTGCATATGTGCACTAATCATATGGAGCAAACCTCCACAC
CCCTATCTCATCTTCTTCATCATTAGAGACTGGCGCGTACCTTCTTCTTCCTCATCCTTCTCGCCATATCATTCTTTCCC
TCCTC---GATTTTTTGGTCTCGCCAGCGTCAAGTCAAGGCATTACCGGAATG-CACTAGGTTGTCATTGCCTCGGTAAC
GGTTTCG-TTAGCTCCCCTCCCTCTCCTCATTCCTCGTCCTCCTTCCTTCACTCCTTCACTTCTTCCACTAGTTCCCGCA
AGCGTTCACCACCAAGACTAGAGACTGAACGTTCACCTGATAAAATTTTCCTTTCATCTTATCTTCATTAGTTAATTTTC
TCTCAATAGTTTTACATGGCCCGTGTACATTCTTCTTAAACTTGAAAAAAAAATTCTAAATTTTGAAATCCTGTAAAAAT
TGTTCATGATACATAGAAATGAGTGTATGAGCATC--TGCGTCTGTACTGGGTTGAAAAAAAAGAGGGATAATATAATGC
TGCATTTCATCTGAGTGCTGGTACTAATTAACAGCCAGCATCCCCCCTAAATATAGGAGATCATTTGCCTCCATTGGTGA
TTAACCTCTCGTAGCTCTGGCC---ACCTCCTCCGCTCGCTCCGTCCATCCGGCCCGCCG--TTCGAGCCGTCCGTCGAG
ATGGCGGCATCCTACCGCCGCCGCCACACGCCACGGCGCTAGCCCTCCAGAAAGAGAGGCAGCAATGGCGGTCCCATCGT
CGTCCTTGTTGTCGTCGCTGCTGCTCCTCGCGCTCTTCCTGCATCATCATTGCTCCGCTGCCCACGATCGCGGCAGCGCC
GCCGTCGTCGTCAACATCTCCGCCGTGGAGGACGTCGTCCGCGACCGCGCGTTCGAGCTGCTCCACCGCACCGACAAGCT
CGTGGGCGTGCCCCTCACGGCCTGCCCGTCGGCGTGCGGCCTCGTCGAGGTCCAGGCCTCGGCGCTGCGCGTGCGGAGCA
GCTCCCTCTGGGCCGACGGCGTCAACGCCACCGACGCCGCCGCCGGCACCGCGGGGTTCACCGTGCCGCCTCGCGTCGTG
CCGTCCCCGTTCGCCCGCCGCGTCGACGTCGTCTTCGAGCGGTTCGT---CGGCAGCAACTCGTCCGGCGCGCTCTTCGC
CGTGCCGCCCGGGTACGCGCTGGCCGCCCCCGTGGCCGCGCTGCTCGCGTACGACGTGTCGACCGGGAACAACGGCAGCA
GGGCCGTCGGGCTCCGGGCGCTCGGTGCGCCCGTCCGCGTGGAGTTCGGTGACCTCTCGTCGGCGGCGGCGAACGGGACA
CAGCCGTTCAACGCCACGGCGGCGAGGTGCGTGACCTTCGCGGTGGCCAGCGGGCAGGCCAAGGCCGTGGCCACGCACGC
CATGGCGTCGGACACCGCGTGCACGGTGACCGGCACGGGCCACTACGGCGTGGCGGTGCGGCTGCAACCGCCACCGCCTT
CGCCGACGCCGCCGACGCCGCAGCCGCCTGCGGCGGTGCGGGAGCGCTGGTGGGCATGGATGGCGGTGGCCGGCGTCGGC
GGGGTGGTGGCGGTGGGTTTCCTGGCGGCCACCGTGGTCGCGGCGGTGCGGTGGAGCAGGAGGCGCAGGAGGGAGGAGAT
GGACCTGCGGGCGTTGGCCGGGGAGGAGCTGGGGCGGATGGCGGTGCGGGGGAGCAGGATGCCGGCGGCGAAGATGGTGA
GGACGCGGCCGGAGCTGGAGGACGGGAGCCCCATGGCGTGGCGGCGCTAGCTCCCCCGCCGGTCGCACTGTCGCCGTCTG
GTTTAACTAGGTGTACCTTTTTTTTTTCTCAGCATCAGATATTCAGACTTGTATTGTTGTTGTACATTATTACACACAGT
ACTTTGTAGTACTCTATATATGATATA------TTGTGTAAACTCAGATTAAAAATGTACATCGAAATAGGTTATCTT--
-TCTTGAGAGCAACATCTCACTGCATTTCTT-TGAGAACAGTAGTAGCAGATTGCAATGGACTGTCTACTTCCTTTTTAC
ATAATAGGGCGTTTCAGTGCCCAGACTCATCTGCATCCGATTAGACAAAAATTCGTAAAAAATTCAAAATAAATTCAAAA
AAATCAATTTTTTGGTGCGGTAGACAATTTGATGTGTGAGGCCCGCTACAAATTTCAATTTATTTGGACATCTGAGCAGC
TCTCAGCAAAAAGACAAATCGGGCCAAAACAGCACGTGAATAGTAAACATTTTTACAGACCCCAAATTTATTTATTTTTG
CTGAGAGCTCCTTAGATGTCCAAATGATTTGAAAATTAGAGCGGACCTCACGCATCAAATTTTATACCGCACAATTTTTT
TTGGAATTTTTTCAATTTTTCTAGTTTTTGTTTTGATTTTTTTCGTCGGCGTGGGTGCATATGAGCTCGGGTGTAGAGAT
GGATTTTCGCTTTTTACATATAATTTGCTCTTCTCAACTTCTGATGCTCCCTCCACCTCCAGTACAGAACAAAA---AAA
ATTGTGACTGAGATATAATGCCGATATGCACATTATTTGGTGTCACTAAATTCACA------------------------
--AAAATACATACAAATTAT-----------------ATACATCATCATTTCTTCTCCTAACAAGTTCGAGC--------
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>chr7B_744
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-------------------------------------TGCCTCTGCACTGTGTTGAAAAAA----GGGATAATATAATGC
TGCATTTCATCTGAGTGCTGGTACTAATTAACAGCCAGCATCCCCCCTAAATATAGGAGATCATTTCCCTCCATTGGTGA
TTAACCTCTCGTAGCTCTGGCCGGAACCTCCTCCGCTCGCTCCATCCTTCCCGGCGCGCCGTTTCGAGCCCTCCGTCGAG
ATGGCGGCATCCTATCGCCGCCGCCACATGCCACGGAGCTAGCCCTCCAGAAAGAGAGGCAGCAATGGCGGTCCCATCGT
CGTCCTTGTTGTCGTCGCTGCTGCTCCTCGCGCTC---CTGCTGCATCATTGCTCCGCGGCCCAGGATCACGGCAGCGCC
GCCGTCATCGTCAACATCTCGTCCCTCGAGGACGTCGTCCGCGACCGCGCGTTCGAGCTGCTCCACCGCACCGACAAGCT
CGTGGGCGTGCCCCTCACGGCCTGCCCGTCGCCGTGCGGCCTCGTCGAGGTCCAGGCCTCGGCGCTGCGCGTGCGGAGCA
GCTCCCTCTGGGCCGACGGCGTCAACGCCACC------GCCGCCGACACCGCGGGGTTCACCGTGCCGCCGCGCGTCGTG
CCGTCCCCGTTCGCCCGCCGCGTCGACGTCGTCTTCGAGCGGTTCGTCGGCGGCAACTCCTCGTCCGGCGCGCTCTTCGC
CGCGCCGCCCGGGTACGCGCTGGCTGCCCCCGTGGCCGCGCTGCTCGCGTACGACGTGTCGACCGGAAACAACGGCAGCA
GGGCTGTCGGACTCCGGGCGCTCGGCGCGCCGGTCCGCCTGGAGTTCGGGTACCTCGCGCCTGCGGCGGCGAACGGGACG
CCGCCGTTTAACGCCACGGCGGCAAGGTGCGTAACCTTCGCGGTGGACAGCGGGAAGGCCAAGGCCGTGGCCACGCACGC
CATGGCGTCGGACACCGCGTGCACGGTGACCGGCACGGGCCACTACGGCGTGGCGGTGCGGCTGCAACCGACACCGCCTT
CGCTGACGCCGCCGACGCCGCAGCCGCCTGCAGCGGTGCGGGAGCGGTGGTGGGCGTGGATGGCGGTGGCCGGCGTCGGC
GGGGTGGTGGTGGTGGGCTTCCTGGCGGCCACCGTGGTCGCGGCGGTGCGGTGGAGCAGGAGGCGCAGGAGGGAGGAGAT
GGACCTGCGGGCGCTGGCCGGGGAGGAGCTGGGGAGGATGGCGGTGCGGGGGAGCAGGATGCCGGCGGCGAAGATGGTGA
GGACGCGGCCGGAGCTGGAGGACGGGAGCCCCATGGCGTGGCGGCGCTAGCTCCTCCGCCGGTCGCACTGTCGCCGCCTT
GATTAACTAGGTGTACC----TTTTTTCTCAGCATCAGATATTCAGACTTGTATTGTTGTTGTACAGTATTACACACAGT
ACTTTGTAGTACTCTATATATATATATGATGTTTTGTGTACACTCGGGTTAAAAATGTACATTGAAATAGGTAGGTTATT
ATCTTGAGAGCAACATCTCACTGCATGTTCT-TGAGAAC--TAGCAGCAGATTGCAATAGACTGTCCCACTTCATTTACT
GAATCTAATAAGTTGCTG--------------------------------------------------------------
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--------------------------------------TTCTGATGCTCCATCCAGGAT------AGAACAAAACTCAAA
ACTGTGACTGAAATATAGTGCTGATATGCACATTATTTGGTGTCACCAAATTCACAAGAAGGAACATCTGGCCATGAAAA
AAAAAATACATACACATTACATGCATGGCTATGAAAAATACATCATCATTTCTTCTCCTAAGAACTTCGAACGATTTAAC
GATGGTGATAGCAGGGTTACAGATTTCCTCCC----------ATTTTATACTTCTATATTTGTTTGCTGGAGCAAGAAA-
----CTGGGATTTACTCTGTTCCAACTTCAGTGCTTGTGAAGAGCGGCAACGGTCAACAAACATAAGCTCAATT----GT
ACATCACTCAAAATTT-AGGTAACAATACATAGTTAACAAAGTTACAGAGAATTACTGCACGACGGCACTGCGTCTTCTT
CAGATTCCAAATAGAGATGAACTCCTCCGGAGTACGAGAACAGAGTGCCGTATATCTGTTCTCCAAGCATGTCCACTCTC
TGAAACTGATTATTGTACATCTCCTGAGAAACTGCTGCAGTGA-----ACACGTATCATCAACAATCTCTACTAATTGTT
TCCGTTCGATGTGTATGACCAATACTCGTTGACCAGTTCGCGGAAGAGAGATCCTTCAGTTTCCATGAGCTTCGCAGGTT
TATCATACTCCACTGCTTTCCCTGGAAGTGTTCAT---------------------------------------------
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>chr7D_2507
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--TTCTGGGATTTGCTCTGCTCAG-CTTCAACGCTTGTGAAGAGCGGCAATGGTCAACAAATAATAAGCTAAACTGCAGT
ATATTACTCAAAATTTCAGGTAGCAATACATAGCTAA-AGAATTCAGGCAACTT-CTGGAAGATGGCACTGCATCTTCTT
CAGATTCCAAATAA--ATGAGCTCCTCTGGAGTATGACAAGAGATT----TTTCTTTCTGATCCAAACATGCCCGTTC-C
TGAAACCGTTTCTTGTACATCTCCAGAGAAACTGGTTCTTGAACAGTGACACACGTCATCAACGATCTCTCCTAACTGTT
TCAGTTCGACGTGCATGACCAGTACTCGTTCACCAGTTTGCGGAAGAGAGATCCTTCAGTTTCCATGAGCTTCGTAGGTT
TGTCATACTCCACTACTCTCCCTGGAAGTGTTCATATAGCTCATAAGTATGGAAT-AAAAACTCTATGATGCAGTCCTAA
TAAGTTGGCAGCAGCAATAAGACAAACATACCGTCATTCATTGCAAG
>SNPs
SSSSSSSSSSSSSSSSSSSS----------------S-------------SS-----S----------S-----------
---------------------------------------------S----------------------------------
------------------------------------S-----------S--------------------S----------
--------------SS----SS-SS----------------------------------------S-----------S--
------S----S---------S-S-----S------S---------------------S--------S------------
-----SSS-------S------S---------------------S--SS-S--S------------S--------S----
-------S---------------------S--------S---------------S-S-S----------------S--S-
------SS--------------------------SSS---------S-----S-S----S-----S-SS-----------
----S-------------------------------------S--SSSSS--------------S-------------S-
--------SS----------S--------S-SS--SS----------S------S-------------------------
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------------------------------------------------S-------------------------------
------------S---------------------------------------------------------S---------
-----------------------------------S---------S----------------S-----------------
S-------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
S----------------------------------------------S--------------------------------
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-----S--------S-----------------------S-----------------------------------------
---------------S----------------------------------------------------------------
---------------S---------------------------------------S------------------------
----------S--------------------SS-----------------------------------------------
---------------S----------------------------------------------------------------
------------------------------------------------------------------------S-------
------S------------------------S----S--------------------------S--------S---S---
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--------------------------------------------------------S-----------S-S---------
--------S-------------S----------------------------S----------------------------
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--------------------------SSSSSSSSSSSSSSSS-S-S--S----S---SS---S--------S-S--S--S
SS--------------------------------------------------------------------------S---
--------------------------------S----S-----S-------S----------------------------
------S-----------------------------------------------------------------------S-
--------S-------------------------S------------S--S-----------------------------
---------------S---S----------------------------------------------------SS------
-----------------------------------S--------S---S------S------------------------
-----------S-----------------------------------
>forward_476
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--------------------------------------------------------CTAGGTTGTCGTTGCCTCGT----
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>reverse_2247
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------GGAGCAACATCTCACTGCATG-----------------------------------------------------
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