>input_sequence_62958
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----------ATGGTGAGGAGGGGAGGGCTGCTGACTGGTGGGTA---TGGCGGCGCGTCGTCGTGGAAGGCTGGGAGGG
TGATGAGGGCGGCCGTGGCGGCCTTCTTCAACGGCTACCACTGCTTCAGCCCCGTGGCGGCCATGCTCGCGCTGCCCTTC
TCCGCGGCCGTGCTCGCGTCCCAGGCCGCCGCGTCGTCGTCGTCTTCCTCGTCGGGGGCGGTGCTCCGCGGCGTGTCGTC
GCGGCTCCGGGGGATGTTCCACGCCGCGGGGTTCCCGCCGTCGCCCTTCTTCGCGCTGCTCAACGGCAAGCTGTCGCAGA
CCGTGTTCACCTACGCGGCCACGCTGCCGGTGGCGCTCACCGTCCTGCTGCTCGCCAAGGCCTGCGTCGCCGGCGTGCTC
CGCGCGGACCCGGCGCACGACCGGCGGCGGCGGGGGCGCATGTCGCTCCCGCCCTGCGGCGCCGTGGCGCGCGCGTACCC
GGCGCTCGTGGCCACGCACCTCGTCGGCTCCTTCGCCATGCTCTCCGCCAACGCCGCCGCCTTCTCGCTGCTCTTCCTGG
CCTTCGGCGCTGCCGACCTGCTGGGCTTCACCTCCCGCGCGTCCACGCTCGCGCTCTCCGCCGCGGGCGCCATCGCCTAC
TCCGTGGCCGTCGGCGTCGCCACCGTCGTCTGCAACCTCGCGGTCGTGGTGGCCGCCATGGAGGAGCGCTGCGCGGGGCA
CGCCGCGGTGCTGCGCGCGTGCGTCCTCATCAGGGGCCGCGTGCCCACCGCGCTGGCGCTGGCGCTGCCCACCAACCTGG
GCATGGCGGCGGCGGAGGCGCTGTTCCAGCTGCGGGTGGTGTCGCAGCGCCGGAAGGCCGGGAGGCTGGCGCCGGGCGTC
GCCGGCGAGGCCTTCTCGATCGCATACATCCACGCGCTCTGCGTGGTGCTGGAGATCATCGTCAGCTGCATGTTCTACCG
GAGCTGCAGGAGGAGCGAGGCCGATGAGCTGAGAGAGCTGGAGCCCGAGGAGAAGGGCGACCTCCAGGCATAG-------
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--
>chr5A_1_TraesCS5A01G075600
TCCGCTCCGCAACGCCGGTTCGGAGCGGAGCTACGTGCAATTACGATTGAAGGAGGGGTTAGAACCACGCTCCGCGCGCT
CTCCCTTTCTTGGAAGGTTGCCGAACAGGGCTTTAGTTAAAAAAAACGCCAGGGCGGTGTTACTATGTGCCATACTTATG
ACACTTATCATTTAGGTATAAAGTAAACATATGGAATCGAGGGGCTAAAATAACTTGACCGAGACAGTAATAATAATAAT
GTAAAGTAAAAAAAAAACACAGACACATCACACATGATGCTGAGCGCCCTTGTGGACAGGCAGGCACTTGAAACGCACGG
CATATGCAACGTCGGAACCATCGCTGCCACGGTTCCACCGCCAGGCCCCCTCCACGTCCGTCCGAAAGCTGCACACATAT
CCCTCCATTGAGTGCGATGTGATGCAAGAAACCCCTTCGTCGTCACCCGCACCGCTAGCTCGATCTGCATGCATCCATCG
CCAACCTAGCTAGTATCTAGCTTGCACCCGACGCACGCACGCACGTCGCCTACAATGCGCCCCTCTTCTTTTCTTTTTC-
----TCATTTGGCAAACACAATGCGCCTCTTTTGTACGCACATATAACAGGCAA------GGAACGGAAAGAAAAGGAAA
GAAACACGCGGTGGATATACAGCCAGCCTCATCGTCTGATAAAAATGTCGATGATTAATTTCTAGCCTAATTGGTACTCG
CACACAGTACTATATATATTA--------AATTGGGCATAGGAGTGGATTGCTTGCTTCTTCTCCGG---TCCTCCTGTC
CATTTCTGATTTCTTCCTCTTGCAGTTACGGTGTCAGTTCCTTCCGCCGGTGGTTGGCCCGGATCAACTCACACACA---
CTCCTCCTCCTTCCTCCTC-------TCTTGACCTCCCGCCAACCATCGCA-ACCAACCATAAAAACTCCGC---CACTC
GAGCTACACAACACAGCACCGCATTACTCATTGCTGCCT-----------GTGCCCGACCTCTCTATCGCCCCGTCCGCA
CGT---CGTCATGGTGAGGAGGGGAGGGCTGCTGACTGGTGGGTA---TGGCGGCGCGTCGTCGTGGAAGGCTGGGAGGG
TGATGAGGGCGGCCGTGGCGGCCTTCTTCAACGGCTACCACTGCTTCAGCCCCGTGGCGGCCATGCTCGCGCTGCCCTTC
TCCGCGGCCGTGCTCGCGTCCCAGGCCGCCGCGTCGTCGTCGTCTTCCTCGTCGGGGGCGGTGCTCCGCGGCGTGTCGTC
GCGGCTCCGGGGGATGTTCCACGCCGCGGGGTTCCCGCCGTCGCCCTTCTTCGCGCTGCTCAACGGCAAGCTGTCGCAGA
CCGTGTTCACCTACGCGGCCACGCTGCCGGTGGCGCTCACCGTCCTGCTGCTCGCCAAGGCCTGCGTCGCCGGCGTGCTC
CGCGCGGACCCGGCGCACGACCGGCGGCGGCGGGGGCGCATGTCGCTCCCGCCCTGCGGCGCCGTGGCGCGCGCGTACCC
GGCGCTCGTGGCCACGCACCTCGTCGGCTCCTTCGCCATGCTCTCCGCCAACGCCGCCGCCTTCTCGCTGCTCTTCCTGG
CCTTCGGCGCTGCCGACCTGCTGGGCTTCACCTCCCGCGCGTCCACGCTCGCGCTCTCCGCCGCGGGCGCCATCGCCTAC
TCCGTGGCCGTCGGCGTCGCCACCGTCGTCTGCAACCTCGCGGTCGTGGTGGCCGCCATGGAGGAGCGCTGCGCGGGGCA
CGCCGCGGTGCTGCGCGCGTGCGTCCTCATCAGGGGCCGCGTGCCCACCGCGCTGGCGCTGGCGCTGCCCACCAACCTGG
GCATGGCGGCGGCGGAGGCGCTGTTCCAGCTGCGGGTGGTGTCGCAGCGCCGGAAGGCCGGGAGGCTGGCGCCGGGCGTC
GCCGGCGAGGCCTTCTCGATCGCATACATCCACGCGCTCTGCGTGGTGCTGGAGATCATCGTCAGCTGCATGTTCTACCG
GAGCTGCAGGAGGAGCGAGGCCGATGAGCTGAGAGAGCTGGAGCCCGAGGAGAAGGGCGACCTCCAGGCATAGTCAGACA
ATAGCCGCGTAGCTTTGTGATTCTGAGAAACTCTTGGGAGGGTCTCATCAGACGGTCCAGAGAAACATGCACTATACAGT
AGTAAACTGCGATAGCCATTTCAAAAAAAAAAAAGTAAACTGGGATAGCTCTACATTATTTCCCTTTTTTCCTGAATAGT
TTTGTTCGTTTGTTTCCT---TTTTTTTTATGTTGGCATGGAAATGAAATGTAAAAGATGGTTCTATTGTACAGCAGAAA
AAAAATACTCCGTCAAACTGAAATAAATAACCAGTGGATTTTGCACCGTGCAAAAAAAAGAGGAAAGAAACGAAGAATGA
TATGGGTTGGTTCAACATTCTGTACTT---TTTTGGTTGAAAA--------------TTGTTTCACATGAA-------CC
GTTGTTGAAGACACTA--TAGTACAGAAGAATATCTCAAGCTCTGCCCTGGTGATCACATCTGTCAGGTTTAAATTTCTA
TGTTTCAGC-----------------ATACGGAGCATTGAAAGTGCAGCATTACTGCCAGTCTCAAGGCAGAACTTTTTT
GCCAGCAATG------------------------------------------------------------------CTGT
AACTTCAACGGAAAATGCAGTTACAAGGACCACAAAAAAAGAACAATTACAACATAAAATGCAGTTCCATACACCAC---
AGATGAAATGGGTGATTAGGGGACAGAGGAGGGAGCAGAAGAGAAGAGAGTGCAGTGTGAATTAGCAACAGAGGACCATT
TCCCGTTTTGCACATCATCAGACAAAAACACTGAAGCTATCACTTCAGTTGATCAGGAGAACAAACCG------CATATT
TTGCTCTTTCAAGACAGGGTTCATGCACAAGCAC------CTCGATGCATGATTTGGCAACAAATCGAAAGCATGACTGT
GCAAAGCGGTTACACAAAGATCAGTATAC--ATATTGTAGAATCACCTGGTTGAGCTATAGTGATGTGTGTCAACCTGTC
TATCGTTTCAAAACCGCCTAATCTGTTGGTTGGAAAATTTCCTGTGGTAACAACACTAATCCTTTTCTATTTCTTCTAGA
TT
>chr5B_214
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-----------------------------------------------------CTTGACCGAGACAGTAATAATAATAAT
GTAAAGAAAAAAAAAACAG----------ACACATGATGCTGAGCGCCCTTGTGGACAGGCAGGCACTTGAAACGCACGG
CATATGC-ACGTCGGAACCATCGCTGCCACGGTTCCACCGCCAGGCTCCCTCCACGTCCGTCCGAAAGCTGCACACATAT
CCGTCGATTGAGTGGGATGTGATGCAAGAAACCCCTTCGTCGTCACCCGCACCGC----TCGATCTGCATGCATCG----
----CCTAGCTAGCGGCTAGCTTGCACCCGACGCACGTACGCACGTCACCTACAATGCGCCTCCTCTTTTTTTTTCTTC-
----TCTTGTGGCAAACACAATGCGCCTCTTTTGTACGCACATA--AACAGGCAAGCAACGGAACGGAACGGGAAGGAAA
GAAACACGCGC--------------------TCGTCTGATAAAAATGGCGATGATTAATTTCTAGCCTAATTGGTACTGG
CGCACAGTACTATATATATTA--------AATTCGGCATAGGAGTGGATTGCTTGCTTCTTCTCCGG---TCCTCCTGTC
CATTTCTGATTTCTTCCTCTTGCAGTTACGGTGTCAGCTCCTTCCGCCGGTGGTTGGCCCGGATCAACTCACGCACACTC
CTCCTCCTCCTTCCTC--C-------TCTTGACCTCCCGCCAACCATCGCGCACGCAACATAAAAACTCCTCCAGCACTC
GAGCTACACAACACAGCACTGCATTGCTCATTG----CT-----------GTGCCTGACCTCTCTATCGCCCCGTGCGCA
CGT---CGTCATGGTGAGGAGAGGAGGGCTGCTGACTGGTGGGTA---TGGCGGCGCGTCGTCGTGGAAGGCCGGGAGGG
TCATGAGGGCGGCCGTGGCGGCCTTCTTCAACGGCTACCACTGCTTCAGCCCCGTGGCGGCCATGCTCGCGCTGCCCTTC
TCGGCCGCCGTGCTCGCGTCCCAGGCCGCGGCGTCATCCTCCTCGTCCTCGTCGGGGGCGGTGCTGCCCGGCGTGTCGTC
GCGGCTGCGGGGCATGTTCCACGCCGCGGGGTTCCCGCCGTCGCCCTTCTTCGCGCTGCTCAACGGCAAGCTGTCGCAGA
CCGTGTTCACGTACGCGGCCACGCTGCCGGCGGCGCTCACCGTCCTGCTGCTCGCCAAGGCCTGCGTCGCCGGCGTGCTC
CGCGCGGACCCGGCGCACGACCGGCGGCGGCGGGGGCGCATGTCGCTCCCGCCCTGCGGCGCCGTGGCGCGCGCGTACCC
GGCGCTCGCGGCCACGCACCTCGTCGGCTCCTTCGTCATGCTCTCCGCCAACGCCGCCGCCTTCTCGCTGCTCTTCCTGG
CCTTCGGCGCCGCCGACCTCCTGGGCTTCACCTCCCGCGCGTCCACGCTCGCGCTCTCCGCCGCGGGCGCCATCGCCTAC
TCCGTGGCCGTCGGCGTGGCCACCGTCGTCTGCAACCTCGCCGTCGTGGTGGCGGCCATGGAGGAGCGCTGCGCCGGGCA
AGCAGCGGTGCTGCGCGCGTGCGTCCTCATCAGGGGCCGCGTGCCCACCGCGCTGGCGCTCGCGCTGCCCACCAACCTGG
GCATGGCGGCCGCGGAGGCGCTGTTCCAGCTCCGGGTGGTGTCGCAGCGCCGGAAGGCCGGGCGGCTGGCGCCGGGCGTC
GCCGGCGAGGCCTTCTCGATCGCATACATCCACGCGCTCTGCGTTGTGCTGGAGATCATCATCAGCTGCATGTTCTACCG
GAGCTGCAGGAGGAGCGAGGCCGATGAGCTGAGAGAGCTGGAGCCCGAGGAGAAGGGCGACCTCCAGGCATAGACAG---
-TAGCCGCGTAGCTTTCTGATTCTGAGAAACTCTTGGGAGGGTCTGATCAGACGGTCCAGAGAAACATACTACAGT----
---------------------------------AGTAAACTGGGATAGCTCTACATGATTTCCCTTTTTTC-TGAATAGT
TTCATTCGTTTGTTTCCT---TTTTC----TGTTGGCATGGAAATGAAATGTAAAAGATGGTTCTATTGTACAGCAGAAA
AAAAATACCCCGTCAAACTGAAATAAATAACCAGTGGATTTTGCATCGTGCAAAAAAAAAGGGGG---------GAATGA
TATGGGTGGGTTCAGCATTCTGTACTTCTGTTTTGGTTGAAAACTGCCGGGTAAAGTTTGTTTCACATGCTGGACCAGCC
ATTGTTGAAGACATTATCTAGTACAGAAGAATATCTCAAGCTCTGCCCTGGCGATCACATCTGTCAGGTTTGAATTTCTG
TGTTCGAACATAGGGCTTACTGCCAGATAAGGAGCATTTAAATTACAGCATTACTGCCAGTTTTACGGCAGAATTTTTTG
GCCAGTAATGCTACAACTT-------------------------------------------------------------
-------------------------------------------------CAACATAAAATGCAGTTCCATACACCACCAC
AGATGAAATGAGTGATTAGGGGACAGTGGAGAGGGCAGAAAAGAAGAGAGTGCAGTGTGAACTAGCAACAGAGGACCATT
TTCCGTTTTGCACATCATCAGACAAAAACACTGAAGCTATCATTTCAGTTGATCAGGAGAGCAACCGCATATGTCATATG
TTGCTCTTTCAAGACAGGGTTCATGCACAAGCACCTCGATCTCGATGCATGATTTGGCAACAAATCGAAAGCATGGCTGT
GCGGAGCGGTTACAGAAAGATCAGTATATATATATTGTAGAATCACCTGGTTGAGCTACAGTGTTGTGTGTCAACCTATC
TATCGTTTCAAAACCGCCTAATCTGTTGGTTGGAAAATTTCCTGTGGTAACAACACTAATCCTTTTCTATTTCTTCTA--
--
>chr5D_310
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---------------------------------------------------------------------GAAACGCAGGG
CATATGCAACGTCGGAACCATCGCTGCCACGGTTCCACCGCCAGGCCCCCTCCACGTCCGTCCGAAAGCTGCACACATAT
CCCTCCATTGAGTGGGATGTGATGCAAGAAACCCCTTCGTCGTCACCCGCACCGC----TCGATCTGCATGCATCCATCG
CCTACCTAGC---TATCTAGCTCGCACCCGACGCACGCACGCACGTCACCTACAATGCGCCTCTCTTCTTTTCTTTTCTT
TTTTTCGTTTGGCAAACACAATGCGCCTCTTTTGTATGCACATA--ACAGGCAA------GGAACGGAAAGAAAAGGAAA
GAAACGCTCGC--------------------TCGTCGGATAAAAATGGCGATGATTAATTTCTAGCCTAATCAGTACTCG
CACACAGTACTATATAGGAGTATATTAATAATTCGGCATAGGAGTGGATTGCTT----CTTCTCCGGTCCTCCTCCTGTC
CATCTCTGATTTCTTCCTCTTGCAGTTACGGTGTCAGTTCCTTCCGCCGGTGGTTGGCCCGGATCAACTCTCACACA---
CTCCTCCTCCTTCCTC--CTCTTGAGTCTTGACCTCCCGCCAACCATCGCA-ACCCACCATAAAAACTCCGC---CACTC
GAGCTACACAACACAGCACCGCATTGCTCATTG----CTCATTGCTGCCTGTGCCCGACCTCTATCACCTCGTAGGAAGA
GACTCGCGTCATGGTGAGGAGAGGAGGGCTGCTGACTGGTGGGTACTATGGCGGCGCGTCGTCGTGGAAGGCCGGGAGGG
TGATGAGGGCGGCCGTGGCGGCCTTCTTCAACGGCTACCACTGCTTCAGCCCCGTGGCGGCCATGCTCGCGCTGCCCTTC
TCCGCGGCCGTACTCGCGTCCCAGGCCGCCGCGTCCTCCTCCACGTCCTCGTCGGGGGCGGTGCTGCGCGGCGTGTCGTC
GCGGCTCCGGGGGATGTTCCACGCCGCGGGGTTCCCGCCGTCGCCCTTCTTCGCGCTGCTCAACGGCAAGCTGTCGCAGA
CCGTGTTCACGTACGCGGCCACGCTGCCCGTGGCGCTCACCGTCCTGCTGCTCGCCAAGGCCTGCGTCGCCGGCGTGCTC
CGCGCGGACCCGGCGCACGAGCGGCGGCGGCGGGGGCGCATGTCGCTCCCGCCCTGCGGCGCCGTGGCGCGCGCGTACCC
GGCGCTCGTGGCCACGCACCTCGTCGGCTCCTTCGCCATGCTCTCCGCCAACGCCGCCGCCTTCTCGCTGCTCTTCCTGG
CCTTCGGCGCCGCCGACCTGCTGGGCTTCACCTCCCGCTCGTCCAAGCTCGCGCTCTCCGCCGCGGGCGCCATCGTATAC
TCCGTGGCCGTCGGCGTCGCCACCGTCGTCTGCAACCTCGCCGTCGTGGTGGCCGCCATGGAGGAGCGCTGCGCCGGGCA
CGCCGCGGTGCTCAGGGCGTGCGTCCTCATCAGGGGCCGCGTGCCCACGGCGCTGGCGCTGGCGCTGCCCACCAACCTGG
GCATGGCGGCGGCCGAGGCGCTGTTTCAGCTGCGGGTGGTGTCGCAGCGCCGGAAGGCCGGGAGGCTGGCGCCGGGGGTC
GCCGGCGAGGCCTTCTCGATCGCCTACATCCACGCGCTCTGCGTGGTGCTGGAGATCATCATCAGCTGCATGTTCTACCG
GAGCTGCAGGAGGAGCGAGGCCGATGAGCTGAGAGAGCTGGAGCCCGAGGAGAAGGGCGACCTCCAGGCATAGACAAACA
ATAGCCGCGTAGCTTTGTGATTCTGAGAAACTCTTGGGAGGGTCTCATCAGACGGTCCAGAGAAACATACTACAGT----
---------------------------------AGTAAACTGGGATAGCTCTACTTTATTTCCCTTTTTTC-TGAATAGT
TTTATTCGTTTGCTTCCTTTTTTTTC----TGTTGGCGTGGAAATGAAGTGTAAAAGATGGTTCTATTGTACAGCAGAAA
AAAAATACTCCGTCAAACTGAAATAAATAACCAGTGGATTTTGCACCGTGCAAACAAAAAAAGG---------AGAATGA
TATGGGTGGGTTCAGCATTCTGTACTTCTGTTTTGGTTGAAAACTTCCGGGTAAAGCTTGTTTCACATGGA-------CC
ATTGTTGAAGACATTATCTAGTACAGAAGACTATCTCAAGCTCTGCACCGGTGATCACATCTGTCAGGTTTGAATTTCTG
TGTTCGAACATA-GGCTTACTGCCAGATACGGAGCATTGAAATTACAGCATTACTGCCAGTTTCACGGCAGAATTTTTTT
GCCAGTAATGCTGCAAATTCAACAGAAAATGCAGTTCCACAGACCACACAAAAAAGGAAAAAAAATGCCAGTAATTCTGT
AACTTCAACAGAAAATGCAGTTCCACGGACCACAAA-AAAGAACAATTACAGCATAAAATGCAGTTCCATACACCACCAC
AGATGAAATTACTGATTAGGGGACAGTGGAGGGAGCAGAAGAGAAGAGAGTGCAGTGTGAATTAGCAACAGAGGACCATT
TTCCGTTTTGCACATCATCAGACAAAAACACTGAAGCTATCACTTCAGTTGATCAGGAGAACAACCACATG-------TG
TTGCTCTTTCAAGACAGGGTTCATGCACAAGCACCTCG------ATGCATGATTTGGCAACAAATCGAAAACATGACTGT
GCATAGCGGTTACAGAAAGTAC-------ATATATTGTAGAATCACCTGGTTGAGCTATAGTGTTGTGTGTCAACCTATC
TATCGCTTCAAAACCGCCTAATCTGTTGGTAGCAAAATTTCCTGTGGTA--AACACTAATCCTTTTCTATTTCTTCTAGA
--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
------S---------SSSSSSSSSSSSS---------------------------------------------------
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--------------S----------------------------------------SSSS---------------------
--S--------------------------------------------S-------------S------------------
------S-------------------------------------SS----------------------------------
----------SSSSSSSSSSSSSSSSSSSSS----------------S--------------------------------
---------------------------------S----------------------------------------------
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----------------SS-------------------------------------S------------------------
-------------------------S-------SSSS--------------------------------------S----
---------------------S--------------------------------------------------S-------
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-----------------------------------S--S--S--S--------------------S--------------
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----------S---------------------------------------------------------------------
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----------S---------------------------------------------------------------------
-----------------------------------------S--------------------------------S-----
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------------------------------------------------------------S-------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------S-SSS-SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------S--------
---S---------------------SSSSS--------------------------------------------------
-----------------------------------------------------------S---SSSSSSSSSS-------
-------S------S------------------------------------------------------S----------
S------------S---------------------------------------------------------S-------S
----SS-S----------------------------------S-S----------------S---S-------S------
-----S--------------------------------------------------------------------------
---------S------------S--S----------S-------------------------------------------
----------S---------------S-----------------------------------------------------
-S--------------------------------------------------------------S-SS-----------S
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---S----------S-------------S----------------------------------S-------------S--
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SS
>forward_897
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-----------------------------------------------------------------------------ACA
CTCCTCCTCCTTCCTCC---------------------------------------------------------------
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--
>reverse_2074
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-------------------------------------------------------------------------TCAGACA
ATAGCCGCGTAGC-------------------------------------------------------------------
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--
