>input_sequence_62924
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----------------------------------------------------------------------ATGGGGACAG
CAGTGCTGCCCGTCGCCCACAAGCTCTCGCTCGCCTCCCCCTTCCTCCCGCGTCACCGCCGGGCCTGCCGTCCCCCCGCC
CAGCAGCACTGCCGGCGCCGGCGCCATGGGGCCGTGGTGGCGTACATGGAGCCGGACCCGAACTCGCCGGCGGCCATCCT
GGGGCGCATCGTCGGGGCCCTCCCCGTGGTGGGCCTCGTGGCGCGCATCCTGAGCGACGACGGCGGCGTCGGCGGCGACA
CCGTCGACTTCGCCGAGTTCCGGCGCCGCGTCAGCAAGAAGTGCACCGTCATGGACTCCCAGGCCTTCTACGACTTCAAC
GACCGCCGCGGCAAGGTGCGCCTTCCTAATCCTACATGCCCGGCTCCTTTCCGAACCGTGGCGGCGAGTCATTGATTTGC
CGCGTGCGTGCGTGCGCGCGCAGGTGGGAGACCCCTTCTACGTCCTGCTCTGCTGCTGGCTGGCCGCCATTGGCGCCGGG
CTGCTGAAAACGGAGGAGATCCTGGAAGGCGTGGCCCGGCTCCGCATGTCCAACGACATCGAGTACGAGGAGGAGACCTT
CCTCGACATGATGAAGATTGCAAGGGAGGTAAGTAAAGCACTCGAACAT-----CCACCACATCAAACT----CTTTCAG
TTTCAGTGCCATGAAT---CCCTGACCCCTGA----GCTGAACGAAACGGACCGCAATGG-------GTGCAGAAACGGG
CCAAGTCGAAGAGCCAGGCGCCGGTGATACCGATGGAGGCGCGGGCGGAGAAGGCGCTGGAGGCCATCTACGTGTGCTGC
TTCGGGCAGGACATGGTGGAGCCGGAGGACGAGCGGCTGCTGTGCACCATGCTGAACGCGGTGTTCCCGTCGGTGGGGAG
GCCGGCGGTGGAGAGGATGGTGTCCACCATGGCCGAGCAGGTGGCCTCCGGCGAGAGGAGGGGCCCCGGCGCCAAGGTGG
TGCCCAAAGACGTGGCGCAGCGGCAGCTCAAGGACCTCGAGTTCCTCAAGCAGAACAAGCTGGACTCGATATGA------
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>chr1B_1_TraesCS1B01G360500
CTATTGTCAAATAATAAAAGAACGATGCACTTTATAATTAATGTAATTATTCTCTCCAATGCTAGATGATATGTCCGCAC
GAATCTCAGAGCAGGGCCGTTGTGACGTCAGGTTTTGAACTAGTTAGATGGCAACATGGCAGTTTAACCATGATGGCATT
TTTTAGAAAAGAAAACGTGACTTTTTAACCTTGATGGCATTTTTATATTAAGAGATGACATTTTTTATTAAGAGATGGCT
TTTTTGTTTATTAAGAGATGACATGTTTATATTTTAGGAGATGGAATTTTTATATTTTAGGAGATGTCATTTTTATTTTA
GTAGATGGCGTTTTTTATTATTAAGAGGTGGCATTTTTATATTAAAAGATGGCATTTATTTTTTGTACTGCCACTTTTTG
TTTTTTGTTACACGGAGGTTCTGGATGGTGACTAAGAAGGTGGCAACTTTGTGGCGTTTTCATTTAACGTTGCAATTTTA
AATAAAATAAAAATACTTTAACTAAGTCATTTTGGGTCTCAGAGGCGCCCTGGCTCGCCCCCGGCGAAAAACTTGGTGGC
GTTTTTAATGAAATGTGTAGGACACGAAAAGGAAAGTATCGAATCGATTCAGATTATTCAAGTAATTCTGTATACATTGG
TTTTTGTTTTGTTGAGCACAGGTTGAGATTACCAGAAAATGTACAGAAAACCAAGCAGAAATGGTGTGAGGAGGAAAAAA
CCGGAGGAGAAGGCGTTTCGATTTAGTTTGCACCAGTTTCCTTATTCGTAGTAATATCTTATGATTTTTTTTTCACACAA
AAAAAGTTTGTGAACGAAGGTTGAGAGTTTTACATAAATCTGAGTGTGAAAGGTTTGATCCCAAACCTACTGGTTTTGGG
GTAAAAAGCTCTACAAGACCAAGACTGCTCCAGCGAAGAAGTCTG------------------------------ACGCA
CCATGGGCAGATAAGGCGCGCGCCACTCCCACCACACGCAGGGCGTCCAAGAAAAACCCCATCGTCGGGCATGGGGACAG
CAGTGCTGCCCGTCGCCCACAAGCTCTCGCTCGCCTCCCCCTTCCTCCCGCGTCACCGCCGGGCCTGCCGTCCCCCCGCC
CAGCAGCACTGCCGGCGCCGGCGCCATGGGGCCGTGGTGGCGTACATGGAGCCGGACCCGAACTCGCCGGCGGCCATCCT
GGGGCGCATCGTCGGGGCCCTCCCCGTGGTGGGCCTCGTGGCGCGCATCCTGAGCGACGACGGCGGCGTCGGCGGCGACA
CCGTCGACTTCGCCGAGTTCCGGCGCCGCGTCAGCAAGAAGTGCACCGTCATGGACTCCCAGGCCTTCTACGACTTCAAC
GACCGCCGCGGCAAGGTGCGCCTTCCTAATCCTACATGCCCGGCTCCTTTCCGAACCGTGGCGGCGAGTCATTGATTTGC
CGCGTGCGTGCGTGCGCGCGCAGGTGGGAGACCCCTTCTACGTCCTGCTCTGCTGCTGGCTGGCCGCCATTGGCGCCGGG
CTGCTGAAAACGGAGGAGATCCTGGAAGGCGTGGCCCGGCTCCGCATGTCCAACGACATCGAGTACGAGGAGGAGACCTT
CCTCGACATGATGAAGATTGCAAGGGAGGTAAGTAAAGCACTCGAACAT-----CCACCACATCAAACT----CTTTCAG
TTTCAGTGCCATGAAT---CCCTGACCCCTGA----GCTGAACGAAACGGACCGCAATGG-------GTGCAGAAACGGG
CCAAGTCGAAGAGCCAGGCGCCGGTGATACCGATGGAGGCGCGGGCGGAGAAGGCGCTGGAGGCCATCTACGTGTGCTGC
TTCGGGCAGGACATGGTGGAGCCGGAGGACGAGCGGCTGCTGTGCACCATGCTGAACGCGGTGTTCCCGTCGGTGGGGAG
GCCGGCGGTGGAGAGGATGGTGTCCACCATGGCCGAGCAGGTGGCCTCCGGCGAGAGGAGGGGCCCCGGCGCCAAGGTGG
TGCCCAAAGACGTGGCGCAGCGGCAGCTCAAGGACCTCGAGTTCCTCAAGCAGAACAAGCTGGACTCGATATGAGGAGGG
GAACGTCATTTTTGGCAGGTAGATCCACGGAGGA-----ATGAGAATGAATTTTGATGTAGCCACGGTACGTAGGAGGAA
CCAGCTGCCATCGATC--------ATACTGCTGCAAGCAACGCGATTTACACGGTCGAGTCCGTGCCTGCTATGTGCTAT
CTCCCCTATTGCGGTGTTCTTGCAGTGTGATATGAGTGGCACTAGCACATCAGAATCTTCAATCTTGTAAGATGGCACAA
GATTTGACTCGTGCTCCTTAAAAAGAATGTTACCAGCTGTGACACATTCTCGATTAC------ATGTTAATGATAGCATT
TGCAATTTGTCACTAGTCCGGTCAAAAAAAAAACTTGTCACTAGCAACTATGTTCGCTAACTCTGCCTATGTTTTCTAGG
CATAGCCGGTCCCAAGTCCGGGTAAAGGAGGAGAGTTGTGATAGTCTTGGCGAGCCAACATAAAAACTAGCCGGTCTCAT
GGGTATGAAACTCAATTGAGCGAGAGTAGTACTAGGATGGATGACCTCCTGGGAGTTCTCGTGAAAGGGTTTCATATCTA
AGGGTTGTGATAGGTTTGGCGAGCCAACGTAAAAACTAGCCAGTTCTTTGGGTATAAAACCCATTTGGGTGAAAGTAGTA
CAAGGATGAGTGACCTCCTAGGAAGTCCTCGTGAAAAGGTTTCATATCTAGCCTACCCCAACTTGTTTGGGACAAAAGGC
TTAGTAAGTAAGTAGCAATTATGTTCGCTAAGAAAGAAAAGGTAGAAAATCATTGCTAAATTAGCTATACTAGCAAAAGG
GTCTGTGCATTGCAACGGGAAAAAATCATAATCTCCAATGGTCATGACCACAATTTCCTGCATCACCGAAATACACAATC
ACTCTCAATTTCGTGAAATCATGAAAAAAAATTCAAATCATAACATTTTCTTGAACTCATGAACATTTTTTAAATTCGTA
ACACTTTTACATTTTTTTGTACATTTTCTAAAATTAAGAACTTTTTTTGGATT
>chr1D_833
CAG-----------------------------------------------------------------------------
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-----------------------------------AAATCTGTGTGTGAAAGGTTTGATCCCAAAACTACTGGTTTGGGG
GTAAAAAGCTCTACACGTCCAAGACTGCTACAGATCGCGTGCGAACGTAAATCCCAGCGAAGAAGAGTCGAGTCCACGCA
CCATGGGCAGATAAGGCGCGCGCCACTCCCACCACACGCAGGGCGTCCAAGAAAAACCCCATCGTCGGGCATGGGGACAG
CAGTGCTGCCCGCCGCCCACAAGCTCTCGCTCGCCTCCCCCTTCCTCCCGCGCCACCGCCGGGCCTGCCGCCCCCCCGCC
CAGCAGCACTGCCGGCGCCGGCGCCATGGGGCGGTGGTGGCGTACATGGAGCCGGACCCGAACTCGCCGGCGGCCATCCT
GGGGCGCATCGTCGGGGCCCTCCCCGTGGTGGGCCTCGTGGCGCGCATCCTGAGCGACGACGGCGGCGTCGGCGGCGACA
CCGTCGACTTCGCCGAGTTCCGCCGCCGCGTCAGCAAGAAGTGCACCGTCATGGACTCCCAGGCCTTCTACGACTTCAAC
GACCGCCGCGGCAAGGTGCGTCTTCCTCTTCCTACATGCCCGGCTCCTTTCCAAACCGTGGCGGTGAAGCATTGATTTGT
CGCGTGCGTGCGTGCGC----AGGTGGGAGACCCCTTCTACGTGCTGCTCTGCTGCTGGCTGGCCGCCATTGGCGCCGGG
CTGCTGAAAACGGAGGAGATCCTGGAAGGCGTGGCCCGGCTCCGCATGTCCAACGACATCGAGTACGAGGAGGAGACCTT
CCTCGACATGATGAAGATTGCAAGGGAGGTAAAC----CACTCAACCATTCACCTCACCACATCAACTC----TTTGCAG
TTCCAGTGCCAA--TTGGCCCCTGACCACTGA----GCGGACGGCATGAACCGCGATGTATGTACGTGTGCAGAAACGGG
CCAAGTCGAAGAGCCAGGCGCCGGTGATACCGATGGAGGCGCGGGCGGAGAAGGCGCTGGAGGCCATCTACGTGTGCTGC
TTCGGGCAGGACATGGTGGAGCCGGAGGACGAGCGGCTGCTGTGCACGATGCTGAACGCGGTGTTCCCGTCGGTGGGGAG
GCCGGCGGTGGAGAGGATGGTGTCCACCGTGGCCAAGCAGGTGGCCTCCGGCGAGAGGAGGGGCCCCGGCGCCAAGGTGG
TGCCCAAGGAGGTGGCGCAGCGGCAGCTCAAGGACCTCGAGTTCCTCAAGCAGAACAAGCTGGACTCGATATGATTAAGG
GC---TCATTTTTGGCAGGTAGATCCATGGAGAAATGAGATGAGAATGAATTTTGATGTAGCCACGGTGCGTAGGAGGAA
CCAGCTGCCATCGATCGTACATTCATACTGCTGCAAGCAACGCGATTTACACGGTCGAGTCCGTGGC-------TGCTAT
CTCCCTTATTGCAGCGTTCTTGCAGTGTGACATGAGTGCCACTAGCACATCAGAAG-------CTTGTAAGATAGCGCGA
GATTTGGCTCGTGCTCCTTGAAAAGAATGTTACCAGTTGTGGCACATTCTCGATTACTAATACATGTTAATGATGGCATT
TGTAATTTGTCACTA-----------------------------------------------------------------
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--------------GCAATTATGTTTGCTCAGGCAGAAAAGGTAGAAAATCATTGCTAAATTAGCCATA-----------
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>chr1A_930
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-------------------------------------------------------------------------------A
CCATGGGCAGATAAGGCGCGCGCCACTCCCACCACACGCAGGGCGTCCAAGAAAAACCCCATCGTCGGGCATGGGGACAG
CAGTGCTGCCCGTCGCCCACAAGCTCTCGCTCGCCTCCCCCTTCCTCCCGTGCCACCGGCGGCCCTGCCGTCCCCCCGCC
CAGCAGCACTGCCGGCGCCGGCGCCATGGGGCGGTGGTGGCCTACATGGAGCCGGACCCGAACTCGCCGGCGGCCATCCT
GGGCCGCATCGTCGGGGCCCTCCCCGTGGTGGGCCTGGTGGCGCGCATCCTGAGCGACGACGGCGGCGTCGGCGGCGACA
CCGTCGACTTCGCCGAGTTCCGCCGCCGCGTCAGCAAGAAGTGCACCGTCATGGACTCCCAGGCCTTCTACGACTTCAAC
GACCGCCGCGGCAAGGTCCGTCTTCCTCTTCCTACATGCCCGGCTCCTTTCCAAACCGTGGCGGCGAATTGTTGATTTGC
CGCGTGCGTGCGTGCGC----AGGTGGGAGACCCCTTCTACGTCCTGCTCTGCTGCTGGCTGGCCGCCATTGGCGCCGGG
CTGCTGAAAACGGAGGAGATCCTGGAAGGCGTGGCCCGGCTCCGCATGTCCAACGACATCGAGTACGAGGAGGAGACCTT
CCTCGACATGATGAAGATTGCAAGGGAGGTAAATAAAGCACTCAAACAT-----TCACCACATCAACTCACTCTTTGCAA
TTCCAGCGCCAATATTGGCCCCTGGCCCCTGAGCGGGCGGACGGCATGAACCGCGATGTGT----GTGTGCAGAAACGGG
CAAAGTCGAAGAGCCAGGCGCCGGTGATACCGATGGAGGCGCGGGCGGAGAAGGCGCTGGAGGCCATCTACGTGTGCTGC
TTCGGGCAGGACATGGTGGAGCCGGAGGACGAGCGGCTGCTGTGCACCATGCTGAACGCGGTGTTCCCGTCGGTGGGGAG
GCCGGCGGTGGAGAGGATGGTGTCCACCGTGGCCAAGGAGGTGGCCTCCGGCGAGAGGAGGGGCCCCGGCGCCAAGGTGG
TGCCCAAGGAGGTGGCGCAGCGGCAGCTCAAGGACCTCGAGTTCCTCAAGCAGAACAAGCTGGACTCGATATGAGGAGGG
GCTCCT--TTTTTGGCAGGTAGATCCATGGAGAAATGAGAAGAGAATGAATTTTGATGTAGGCACGGTACGTAGGAGGAA
CCAGCTGCCATCGATC--------ATACTGCTGCAAGCAACGCCATTTATAAGGTCGACTCCGTGCC-------TGCTAT
CTCCCTTATTGCGGTGTTCTTCAAGTGTGATGTGAGTGGCACTAGCGCATCAGAAG-------CTTGTAAGATAGCACAG
GATTTGACTCGTGCTCCTTGAAAAGAATGTTACCGGTTGTGGCACATTCTCGATTACTAATGCATGTTAATGATGGCATT
TGTAATTTGTCACTA-----------------------------------------------------------------
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--------------GCAATTATGTTTGCTCAGACAGAAAAGGTAGAAAATCATTGCTAAATTAGTTATA-----------
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>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S----------------------S----------S---
---------------S-S-----------S---SSSSSSS-SSSS-----------------------------------
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----------------------------------------------------S---------------------------
--------------------------------S-----------------------------------------------
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----------------------S---------------------------------------------------------
--------------------S------SS-----------------------S--------------S------------
-----------------SSSS-----------------------------------------------------------
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--------------------------------S----------S----------S-----------SSS----S--S---
--S--------SS-S-----------------------S--SS-S-SSSSS-SSS-SSS---------------------
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----------------------------S-----S---------------------------------------------
-------S--S---------------------------------------------------------------------
-SS-S----------------------S----S-----------------------------------------------
-------------------------------------------------------------------SSSSSSS------
-----S-------------------------------------------------SSSSSSSS----------S------
-------------------S----------------S----S--------------------------------S-----
--S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-----------S---S---S-----------------------------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_914
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--------------AAGACCAAGACTGCTCCAGC----------------------------------------------
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>reverse_2883
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--CTGTGCATTGCAACGGGAAA----------------------------------------------------------
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