>input_sequence_21856
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-------------------------------ATGCCGCCGCTCCCGACGATGACCCACTCCTCCTCCTTCCTCCTCCCGC
CCCC------GCCTGCTCCTCCGGCCGACG---------CCGAGGACGCGGTCTCCTACGCCGTCGTCGTCCTCAACCAG
CGCCTCCCGCGCTTCGCGCCCCTGCTCTGGACCCGAGGTAACCGACCAACCAACCCAACCAGCGCGCGCCCCTCCCTCCC
TCCCTCTCCTCTGTTCCGTGGGCATTATCGCTGCCTTCGCTCTCCGTCCTCGTGGACAAGTTTTGACGTGTCGGCTCTCT
GTGT--------------TGTTGT---------------------------GTGAGCAGCGCAGCTGCGGGTGTGCGCGG
ACGGCGGCGCCAACCGGGTCTTCGACGGCATGCCGGAGCTGCTCCCGGCCGAGGACCCCGACGAGGTCCGCGCAAGGTGA
TCGATCAAAGTCTTCTCTCTGCCCTTCCTCTTTTTTTCTTTTTCTCACCCAGTGATAGCTGCGTGCCTACGCCTCCCACC
TGTTCCTAGTTGACTCTGCCTCT-CGTGGATCAATGCCCATCACGTGCTTGTTGGAATGCGTCGT---------------
----T-AAAATTCCATTTGG-TTGTATGCCGATGCTGTTGCGTGCAAGCATAAACGGTGGCCTGTCAATGCGGTCCGTGG
AGCCTTTGGTTCAAGTTGAAGTTTGAACCGGGGTTCGCTTCTCAATATGCTTTTTCTCTTCGTTTCTTTTTTTGGCATGA
CGCTTCTCAGCATCTGCCCTGTTTGTT-------------------------------------------------TAGT
CAAAACCTCCAAGTGT--CCTTATATGCCTTTTCTCCATGTGTTCTAGCAAAACTCAGAG--TTTCTTGAGAAAGTACTT
CAAC---AGTTCAGCCAATGAATTTTCGGTCTTCGTATTCGATGTAGTCTCTGATCTTTAAATGATTG---TACGCCTTT
TCATTTGA------------------------TCATTTTTTTGAAACATAT--------TACAGAGTTCAGCTCTGCTTA
GGTTGTCTAT----GTAATGCTGAAGAGTT-TTTTTATGGAGGAAAAATGTTCTTAATTTACCT--AGGCGCCACCAGAG
GGTTTGGCAGATTAAATCATACCACGGCGACAGAGTATGCATCACATTTGAAATAG----TTTATACTGCATCAATGGAT
GGAACACATTTAGTTGTTCGCCCATGCCAAA------AAGTAGTTGGGAAGAGATTTTTAAAACCTATTTATTGGTTGTT
GGGAGGTAGGTTTAAGACAGATTTTCTTTGCTGGTTGTTTGTATGTGACG-TTTCATTCATTAATTTGTCCTTACCTTGC
TGCAGGTACAAGCCCGACGCCATCGAAGGAGATATGGATTCTGTAAGGCCAGAAGTGAAGGAATACTACTCCAGTTTGGT
AAGTAACTAATTTAAAACTCCTTCCATCATACCTTGCTGAAAATGAGATGCTGAACC--------------AAAAATCAT
GTTGTATGCAACAACTGTCCGGGGCAGTTTCTAGTACTCCCTCCGTCCGGAAATACTCGTCGGAGGTATGAATGTATCTA
GATGTATTTTAGTTCTAGATACATTCATTTTTATGCATTTCTTCGACAAGTATTTTAGGACGAGGGAGTACTTGTTAGGG
AGAAAGATATCATGCGTAGCAAAAAACAAGCAGGCAGAAACATATCATTTATTGGCCATCTTGGTCCACATGAATATGTT
TGCGATTCTCTTTTGGACTGTTGTGTGATGTTAGCTGCAATGAGCTATGGAAATATCAGAATTTCATGTCTGCAAGTTTA
GATGACTCTCACTGACAACAATGCGGGAAAGAAATCTATTTTCTTGTGTGAAATCAAGCTGCTGAAATAATTACATTGAT
TAAATTGTC---------CTAGAAAACCATGAAGGGAGCGATGCCTTGTTTTATTGTA-TTTTTAGCAGGCTTTTGTTTC
TATACAAATATTTTTGGTATGCTGGTCCTGGTAAATGCAAGTACTATTTCAGCGTTGATTAAATTGGCATGGCCAGTTGT
ACCCCTAGCCTTGAAGGGAGCGACGCCTTGTTTTATTGTA-TTTTTAGTAGGCTTTTGTTTCTATACCAATATTTTT-GG
TATGCTTGTCCTGGTAATTGCAAGTACTATTTCAGTGTTGATTAAATTGGCATGAATCAGTCGTACCCCTAGCCGTGAAC
CTCAAGTTTCTTCCTGGAAATGTTGTGGAGTAGCAGCAGGTATAATGTAAATGTAAACCAAGTTCACATGCATTTGATTT
GCCCTGCTTTACT-------------GAAAGATGCAGCATGAATGTCAACTCTGGGCATTATTAGTATTCTGTACAATAG
ATAATTTTTCTGGTTTAAGATTAGCCAATGAGGCCTTGAAACTGGGACTGGAATGATTGCTGACTTACAGCAAAATGATA
TTACTGACGACACCCTTCTATGATCAATTGCAGGGTACCCAAATAATCGATGACTCACATGATCAGGACACCACAGACTT
GAACAAATGCATATCATTCATCACCAGAAATCCACCCGGGCCAGACAATTCTAATGTACACCAGATCAGTTTTCAGTATT
TACTCCAGATCAGTCTTTGCAACACCCGCTTACACG--GATGTTACTCTGTTTTGTTTAACTGCAGCTCTGCATTCTCGT
TCTCGGTGCGCTTGGAGGAAGGTTCGATCACGAGATGGGGAACATCAACGTGCTGCATCGCTTCTCAAACACCAGGATCA
TCCTCCTGTCAGACGACTCCTCGATCTTTCTGCTCCCAAAGACGCACAGTCACGAGATCCACATCGAGCGGTCTGTCGAG
GGTCCTCATTGTGGACTGATCCCCATGGGCGCGCCGTCAAGTAGCAGCACCACTACCGGTCTCCGGTGGAACCTAGGTAC
AGGCAT-----CTAACTTGCAACCTCATTCTTGTATGTCAACATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAACATTTTC---------------------------------------
------------------------------------------TGAATAATAGTCTTGCTGAACTTTT-TCTCCAGATAAC
ACCAGCATGAATTTCGGCGGGCTGCTGAGCACATCAAACATTGTGGAGGACGAGATTGTAACAGTCACTTCAGATTCTGA
TTTGATTTGGACAATATCGCTTCGGAAACATACTTAA-------------------------------------------
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>chr3B_1_TraesCS3B01G485900
GTCATTTTGCCGTCTGTAAGGGGATGGCAAAGTGATCAAATAGGCCGGACAAACAGGGCCATCTATGCCGTCTGCTGGCA
GACGGTATAGCTGGCCACGTGGCAGCTTCCCAGTGCTGCCCTAGCTAAGCTCTTTGTCGTCTGTCAGCGGACGGCAAAGA
AGCTGATTCCTGTAGTGATTCTTGATTATTTGGCAACAAATATCGATGTTTTCCCTACACATGCAAAATTTCGCAAAGTA
ATCACATTTGCGGAGGTGGACAAAAAACATTTGGTGCCACCCAAGCGGTGGAGCAGTAGGCCGGAGCATTTTGCTGAGCA
CGTATCTGGTTGGTTGTGAGTGTAGACGTTTGAGGGGTGACCGGTCATTGTGGGGCGCGTCCGTGTTCGTTTAGGGGGGC
TGGATTTCACAGTCGGGTGCCGTTTAGGGGGGCCGATTAGGTAGGTAGGTCCAGCTGTAGATGCTCTCACAGTATGATAT
GGTCCACACGCCAACACTCACGCCCTTCTTTTCTTGTCAGTCAGCCTCTCAACCAAGAGCCAGTTTTGGGCTGGGAGTCT
GCCTTGGACGGCTG-GCCTGAGGTCAGGATTTGACCCAAAAAAAAAAAA-CTACGCAGTTGCCCAACGGGAACGGGGACG
GGAACGGGGACGGGGCCGTGGCCAACCTGGCCTTGACCTCGGCTC-----CGACCCCTCCCTTCACTGTCTGTCACA---
AGAAAGATCCCCGATTCCGCTTGTGCGGCGCTGCTGATCAACGCTGCCCCCGCCAGTCGTACTCGCCGCACCCCGCAACT
ACCACCGTCCGCCAAGGACGATTTCGGGTCGAGAGGAGAGGAGAAAAGACCG-----------ACACCGTCTCTCCTTCT
CGCC--------TTCGTTAAAACCCTTCCTTTTGTCCACGCGACCTACGCCACCTCTTTTCCTCTCGCATACCCTG---T
TCGCTCGTCTTCTCCCCTGTTCCAGCCCAAGTC---C--------------CCCGCCGACCCCGCCACGCCACCTCCGCG
GC-----------CCT-----------CGCCATGCCGCCGCTCCCGACGATGACCCACTCCTCCTCCTTCCTCCTCCCGC
CCCC------GCCTGCTCCTCCGGCCGACG---------CCGAGGACGCGGTCTCCTACGCCGTCGTCGTCCTCAACCAG
CGCCTCCCGCGCTTCGCGCCCCTGCTCTGGACCCGAGGTAACCGACCAACCAACCCAACCAGCGCGCGCCCCTCCCTCCC
TCCCTCTCCTCTGTTCCGTGGGCATTATCGCTGCCTTCGCTCTCCGTCCTCGTGGACAAGTTTTGACGTGTCGGCTCTCT
GTGT--------------TGTTGT---------------------------GTGAGCAGCGCAGCTGCGGGTGTGCGCGG
ACGGCGGCGCCAACCGGGTCTTCGACGGCATGCCGGAGCTGCTCCCGGCCGAGGACCCCGACGAGGTCCGCGCAAGGTGA
TCGATCAAAGTCTTCTCTCTGCCCTTCCTCTTTTTTTCTTTTTCTCACCCAGTGATAGCTGCGTGCCTACGCCTCCCACC
TGTTCCTAGTTGACTCTGCCTCT-CGTGGATCAATGCCCATCACGTGCTTGTTGGAATGCGTCGT---------------
----T-AAAATTCCATTTGG-TTGTATGCCGATGCTGTTGCGTGCAAGCATAAACGGTGGCCTGTCAATGCGGTCCGTGG
AGCCTTTGGTTCAAGTTGAAGTTTGAACCGGGGTTCGCTTCTCAATATGCTTTTTCTCTTCGTTTCTTTTTTTGGCATGA
CGCTTCTCAGCATCTGCCCTGTTTGTT-------------------------------------------------TAGT
CAAAACCTCCAAGTGT--CCTTATATGCCTTTTCTCCATGTGTTCTAGCAAAACTCAGAG--TTTCTTGAGAAAGTACTT
CAAC---AGTTCAGCCAATGAATTTTCGGTCTTCGTATTCGATGTAGTCTCTGATCTTTAAATGATTG---TACGCCTTT
TCATTTGA------------------------TCATTTTTTTGAAACATAT--------TACAGAGTTCAGCTCTGCTTA
GGTTGTCTAT----GTAATGCTGAAGAGTT-TTTTTATGGAGGAAAAATGTTCTTAATTTACCT--AGGCGCCACCAGAG
GGTTTGGCAGATTAAATCATACCACGGCGACAGAGTATGCATCACATTTGAAATAG----TTTATACTGCATCAATGGAT
GGAACACATTTAGTTGTTCGCCCATGCCAAA------AAGTAGTTGGGAAGAGATTTTTAAAACCTATTTATTGGTTGTT
GGGAGGTAGGTTTAAGACAGATTTTCTTTGCTGGTTGTTTGTATGTGACG-TTTCATTCATTAATTTGTCCTTACCTTGC
TGCAGGTACAAGCCCGACGCCATCGAAGGAGATATGGATTCTGTAAGGCCAGAAGTGAAGGAATACTACTCCAGTTTGGT
AAGTAACTAATTTAAAACTCCTTCCATCATACCTTGCTGAAAATGAGATGCTGAACC--------------AAAAATCAT
GTTGTATGCAACAACTGTCCGGGGCAGTTTCTAGTACTCCCTCCGTCCGGAAATACTCGTCGGAGGTATGAATGTATCTA
GATGTATTTTAGTTCTAGATACATTCATTTTTATGCATTTCTTCGACAAGTATTTTAGGACGAGGGAGTACTTGTTAGGG
AGAAAGATATCATGCGTAGCAAAAAACAAGCAGGCAGAAACATATCATTTATTGGCCATCTTGGTCCACATGAATATGTT
TGCGATTCTCTTTTGGACTGTTGTGTGATGTTAGCTGCAATGAGCTATGGAAATATCAGAATTTCATGTCTGCAAGTTTA
GATGACTCTCACTGACAACAATGCGGGAAAGAAATCTATTTTCTTGTGTGAAATCAAGCTGCTGAAATAATTACATTGAT
TAAATTGTC---------CTAGAAAACCATGAAGGGAGCGATGCCTTGTTTTATTGTA-TTTTTAGCAGGCTTTTGTTTC
TATACAAATATTTTTGGTATGCTGGTCCTGGTAAATGCAAGTACTATTTCAGCGTTGATTAAATTGGCATGGCCAGTTGT
ACCCCTAGCCTTGAAGGGAGCGACGCCTTGTTTTATTGTA-TTTTTAGTAGGCTTTTGTTTCTATACCAATATTTTT-GG
TATGCTTGTCCTGGTAATTGCAAGTACTATTTCAGTGTTGATTAAATTGGCATGAATCAGTCGTACCCCTAGCCGTGAAC
CTCAAGTTTCTTCCTGGAAATGTTGTGGAGTAGCAGCAGGTATAATGTAAATGTAAACCAAGTTCACATGCATTTGATTT
GCCCTGCTTTACT-------------GAAAGATGCAGCATGAATGTCAACTCTGGGCATTATTAGTATTCTGTACAATAG
ATAATTTTTCTGGTTTAAGATTAGCCAATGAGGCCTTGAAACTGGGACTGGAATGATTGCTGACTTACAGCAAAATGATA
TTACTGACGACACCCTTCTATGATCAATTGCAGGGTACCCAAATAATCGATGACTCACATGATCAGGACACCACAGACTT
GAACAAATGCATATCATTCATCACCAGAAATCCACCCGGGCCAGACAATTCTAATGTACACCAGATCAGTTTTCAGTATT
TACTCCAGATCAGTCTTTGCAACACCCGCTTACACG--GATGTTACTCTGTTTTGTTTAACTGCAGCTCTGCATTCTCGT
TCTCGGTGCGCTTGGAGGAAGGTTCGATCACGAGATGGGGAACATCAACGTGCTGCATCGCTTCTCAAACACCAGGATCA
TCCTCCTGTCAGACGACTCCTCGATCTTTCTGCTCCCAAAGACGCACAGTCACGAGATCCACATCGAGCGGTCTGTCGAG
GGTCCTCATTGTGGACTGATCCCCATGGGCGCGCCGTCAAGTAGCAGCACCACTACCGGTCTCCGGTGGAACCTAGGTAC
AGGCAT-----CTAACTTGCAACCTCATTCTTGTATGTCAACATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAACATTTTC---------------------------------------
------------------------------------------TGAATAATAGTCTTGCTGAACTTTT-TCTCCAGATAAC
ACCAGCATGAATTTCGGCGGGCTGCTGAGCACATCAAACATTGTGGAGGACGAGATTGTAACAGTCACTTCAGATTCTGA
TTTGATTTGGACAATATCGCTTCGGAAACATACTTAAATTGTG-TATTGTACAGTAGATTATGGTCTAAATTTTGGCTCG
TCGATTCTACGTGGATGG-ATTCTACATATTTTACTGTGATGTGTTGATATAGTTCATTTCATTGGACATTTCGCGT---
--------CAGGTGTCCTTGTATTTCAGCATCTTATTTTCTTACTTGTGCATTTCATATTGTCAAAGTGCAAAATGCAGT
ATTATTATTATTGTTCGAGCTGTGGACTAGTCCACAATTTCGACATGAACTCGTGCATGTGTGTATGTGTGCGTGCGGTG
GTGGAAGAGTAGCGTCTCTTGCAGTGGCGGAGCTTGAAAGAAAAAGTTGGGCGGGTCAGATTAAAGAAGAACACACGTTT
TTCTAAAATTTTGAATGATGAGCATTAGTATATGATACACGGTTATAAGATGGAGCAAGCACATATGCACATATTTCTG-
----------------------------GCTATTGCTTATCAAATGAGCAATTTGGTGTTGCCTTGCTGCTGTGTGTGAT
GTACTGATGTGTAGTCCATGCAGGCTATTGCTTATCAAATGGGGAATTTGGTGTTGCCTTTGGTGTTGTGTTTATACCGA
TGTGTCTCAGCAAAATTCAGTTCAGCACCGGCACGTATGGATGTTGGAGCCTTGGAGTAGAGCAGACGCAACACACAGGC
CAGGGGCTCATGTGCCCGCAGTTCGG------------------------------------------------------
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-------------------------------CCCCTTATATTTTAGAAATGATGGAATATTTAGTTTGGCGGGTGGGGGA
GATGATAGAGTGTGTTTTATTTTTATTTATAATGCAATGATTTAGTGAGCCCTTCTTGGTGTGATTATACATTATCCGCT
AACCAACCTATATTTATGTGGTGAAAATTCTATATCAGTGGTGGCATGTATTACAATGTTGGTGCTACAATATTACATGA
TGGCGCTTTTTTTTTCAGATGGTGGGAGGGTGCGCGGGATTGATACGTTTTTACATGCCAGTTGTTGCTGATTGACTTGA
AAAATCGTTGGCCCGGTCAAAATCTTAAATCAAATCCAAAATTG
>chr3B_1
GTCATTTTGCCATCTGCAAGGGGACGGCAAAGTGACCAAATAGGCCTGGCAAACAGGGCCATCTATGTCGTCTGCTGGCA
GACGGTATAGCTGGCCACGTGGTAGCTTCCCAGTGCTGCCCTAGCCAAGCTCTTTCTCGTCTGTCAGTGGATGGCAAAGA
AGCTTATTCCTGTAGTGATTCTTGATTATTTGGCAACAAATATCGATGTTTTCCCTACACACGCAAAATTTTGCAAAGTA
ATCACATTTGCGGAGGTGGACAAAAAACATTTGGTGCCACCCAAGCGGTGGAGCAGTAGGCCGGAGCATTTTGCTGAGCA
CGTATCTGGTTGGTTGTGAGTGTAGACGTTTGAGGGGTGACCGGTCATTGTCGGGCGCGTCCATGTTTGTTTAGGGGGGC
TGGATTTCACAGTCAGGTGCCGTTTAGGGGGGGCGGAC---TAGGTAGGTACAGCTGTAGATGCTCTCACAGTATGGTAT
GGTCCACACGCCAACACTCACGCCCTTCTTTTCTTGTCAGTCAGCCTCTCAACCAAGAGCCAGTTTTGGGCTGGGAGTCT
GCCTTGGACGGCTGTGCCTGAGGTCAGGATGAGACAAAATAAAACAAGAGCTACGCAGTTGCCCAACGGGAACGGGAACG
GGAATGCGGAG------GTGGCCAACCTGGCCTTGACCTCGGCTCGGCTCCGACCCCTCCCTTCACTGTCACAAG-A---
AAAAAGATCCCCGATTCTGCTTGTGTGACGCTGTTGATCAACGCTGCCCCCGCCAGACTTACTCGTCGCACCCCGCAACT
ACCACCGTC-----------------------------------------------------------------------
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>chr3D_686
ACCCCT--------------------------------------------------------------------------
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---------------------------------------------------------TCCCTTCGCTGTCACGAG-AAAG
AGAAAGATCCCCGATTCCTCTTCTGCGGCGCTGCTGATCAACGCCGG-CCCGCCGGTCGTACGAG--------------T
ACCACCGTCCGCCAACGACTTCCGTCGGCTCCAGTCCAGAGGACCGGCTACGCGCCATCCGCCACACGATCTCTCCTTCT
CGTTCGTGTTCGTTCGTTAAAACCCTTCCTTTTGTCCGCGCGACCTACGCCAGCTCTTTTCCTTTCGCATATCCTACTAT
TCTCTTCTCTCCTCCCCTGTCCCAGTCCCCCACCGGC--------------CCCGCCCTCCCCGCCACGCCACCTCTCAC
CTCCCGCGTCTCACCGGCAGCCGCCGCCACCATGCCGCCGCTCCCGACGATGACCCACTCCTCCTCCTTCCTCCTCCCGT
CCCCTTCCCCGCCTGCTCCTCCGACCGGCGC---CGACGCCGAGAACGCGGTCTCCTACGCCGTCGTCGTCCTCAACCAG
CGCCTCCCGCGCTTCGCGCCCCTGCTCTGGACCCGAGGTAACC----AACCAGCCCAACCAATGCGCCCCTCCCTCTCTC
TCCTCCCCAACGCTGCGGCCTCTTCTCATTACTGTCCTGATGGCT-------------------------TCGCCTCTCT
GTCG--------------TGTGCTAAACTGACGCTGTTCCTGTGTCGTCCCGTGCGCAGCGCGGCTGCGGGTGTGCGCGG
ACGGCGGCGCAAACAGGGTCTTCGACGGCATGCCGGACCTGCTCCCCGGCGAGGACCCCGACGAGGTCCGCGTCAGGTGA
TTAATCAAAGTCTTCTCTGCCTTGC------------TTTTTCTTTAGCC--TGATAGCTGCGTGCCTACGCTTCCCACC
TGTTCCTGGTTGACTCTGCCTCTCCGCGGATCAATGCCCATCACGTGCTTGTTGGAATGCGTCTGAGATAGCTGTAAAAT
AAAAT-AAAATTCCTTTTGGTTTGTATGCCTGTGCTGTTGCGTGCAAGCATAAACGCTGGCATGCCAATGAGTTCTGACG
AGCCTTTGGTTG------------------------------------ACC----------------TATTTTGGCATGG
TCCTTCTCAGCATCTGCCTTGTTTGTTTTCGCAATACATTGTACG--------CTATATTTGGTACGGTATGTGTTTAGT
CAAAAACTCCAAGTTACCCCTTATATGCCTTGCCTGCATGTGCTCGGCCACAAATTCAGAGTTTTCTTGAGACGAGACGA
ATCAACTACTTCAGCTAAACAACTGTCAGTCT------------------CTGTCATTTTTGAATGGCTGATACGCATTT
TCACTTGT------------------------TATTCTTCTTGAAACATACTCTATCAGTACAAAGTTCAACTCTGCTTG
GGTTATCTAT----GTAATGCTCAAGAGTTGTTTATATGAAGGAAAAATGTTCTCAAGTTTACCTAAGGTGCCACCAGAG
GGCTTGGCAGATTAA-TCATACAACAGCGATATAGTATGCATCGCATTTTGAATAATTTATTTATACTGTATCAATG---
--AACACATTTAGTTCTTCGCC-ATGCCAGA------TAGTAGTTGGGAAGAGATTTT-AAAACCTATTTATTGGTAGTT
GGGAGGTAGGTTTAAGACAGA-TTTCTTTGCTGGTTGTCTGTATGTGACGATTTCATTCATTAATTTGTCCTTACCTTCC
TGCAGGTACAAGCCCGATGCAATCGAAGGAGATATGGATTCTGTAAGGCCAGAAGTGAAGGAATACTATTCCAGTTTGG-
---TAACTAATTTAAAACTCCTTCTATCATACCTTGCTGAAAATGAGATGCTGAACC--------------AAAAATAAT
ATTGTATGCAACACCTGTCCAGGGCAGTTTCTACTA--------------------------------------------
------------------------------------------------------------------------TGTTAGGG
AGAAAGATATCATGCGTAGCAAAAAACAAGCAGGCAGAAAGATATCATTTATTGGCCATCTTGGTCCACATGAATATGTT
TGTGATTCTCTTTTGGACTGTCCTGGT-----------------------------------------------------
-------------------------------------------------------AAACTGCTGAAATAATTACATTGAT
TAAGTTGTCCAAATTGTCCTAGAAAACCAGGAAGGGAGCGATGCCTTGTTTTATTGTATTTTTTAGTAGGCTTTTGTTTC
TATACCAGTATTTTTGGTATGCTTGTCCTGGTAAATGCAAGTACTATTTCAGTGTTGATTAAATTGGCATGGCCAGTTGT
AACCCTAGCCGTGAAAGGAGCGATGCCTTGTTTTATTGTATTTTTTAGTAGGCTTTTGTTTCTATACCAATATTTTTTGG
TATGTTTGTCCTGGTAAACGCAAGTACTATTTCAGTGTTGATTAAATTGGCATGATCAGTT-GTACCCCTAGCCGTGAAC
CTCAAGTTTCTTCCTGGAAATGTTGTGGAGTGGCAGCAGGGATAATGTAAATGTAAACCAAGTTTATGTACATTTGATTT
GCCCTGCTTTACTACTTTTTGAGAGAGAGAGAGGCAACATGAATGTCAACGCT-GGCATTATTAGTATTCTGTACAATAG
ATGATTTTTCTGGTTTAAGATTAGCCAATGAGGCCTTGAAACTGGGACAGGAACGATTGGTTACTTACAGCAAAATGATA
TAT-TGACAACACCCTTCTTTGATCAATTGCAGGGTACCCAAATAATCGATGATTCACATGATCAGGACACCACAGACTT
GAACAAATGCATATCGTTCATCACCAGAAATCCACCCGGGCCAGACAATTCTAATGTACACCAGATCAGCTTACAGTATT
TACTCAAGATCAGTCTTTGCAACACCCGCTTATACA--GATGTTACTCTGTTTTGTTTAACTGCAGCTCTTCATTCTCGT
TCTCGGTGCGCTTGGAGGAAGGTTCGATCACGAGATGGGGAACATCAACGTGCTGCATCGCTTCTCAAACACCAGGATCA
TCCTCCTGTCAGACGACTCCTTGATCTTTCTGCTCCCAAAGACGCACAGTCACGAGATCCACATCGAGCGGTCTGTCGAG
GGTCCTCATTGTGGACTGATCCCCATGGGCGCGCCCTCAAGTAGCAGCAGCACCACCGGTCTCCGGTGGAACCTAGGTAC
AAGCGT-----CTAACTTGCAAC--CATTCTTGTATGTCAACATTATTATCTGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATAATAGTCTTGCTGAACTTTT-TCTCCAGATAAC
ACCAGCATGAATTTCGGCGGGCTGCTGAGCACATCAAACATTGTGGAGGAGGAGATTGTAACAGTCACTTCGGATTCTGA
TTTGATTTGGACAATATCGCTTCGGAAACATACTTAAATTGTG-TATTGTACAGTAGATTATGGTCCAAATTTTGGCTCG
TCGATTCTACGTGGATGG-ATTCTACAAATTTTACTGTGATGTGTTGATATAGTTCATTTCATTGGACATTTGGCGT---
--------CAGGTGTCCTTGTATTTCAGCATCTTATTTTCTTACTTGTGCATTTCATATTGTCAAAGTGCAAAATGCAGT
ATTATTATTATTGTTCGAGCTGTGGACTAGTCCACAATTTCGACATCAACTCGTGCATGTGTGTATGTGTGCATGCGGTG
GTGGAA---TAGCGTCTCTTGGTTGTTTGTGTTTGCACATCGGAGAAAGGGTGAAGATTTTTTTTTTTTGCGGGGAGAAA
GGGTGAAGATGGACCATCCTAATTCATAAAACTCCACTTCAGAAAACTTATGTCATAAGACCACATCTTTTCAACGCCTT
TTTCTTCCATAATCACAGTTTTTGTGGTGCAATTGATTATCAAAAGACCAAAGCTGCCGTTTGATGTGAAAACTGTGCTT
CCATGTTTCCGCCAAAAAAGAAAAAAAAAGTGTGCTTCCACGTGGCGCCGTCGCATTAATTCTCTCTTTACCACGAGCTG
GCCCAGATTTCGAATGGAAATTCAAATTCTGACCATGTTTTGCCCGAATTCTAACTAGGAAATTCAAAGTTTTCTCAATC
TTTTTAAAAGCATCCTAGAGACTCATAAATAGTTCAGTGAGTACTAGAAGGGTTGGACGCGCTTTGCTGCGCCGTTGGGG
TTGTTGGGTTTTTCAAAAGATAATTACTCAGTTTCAAGATATAACGTGTATTAGTTTTTTTAAAAGTCAAACCTTTTAAA
TTCATCATGAAAGGAATTTCCATACTATTTTGTTTAATATTATGGATGTCGATATTTTTGCTCTAAACTTGGGCAAAGTT
AAAGAAATGTGGCTTTCAACAAAACTAATCCCCCCTTATATTTTGGAAATGATGGAATATTTAGTTTGGCGGGTGGGGGA
GATGATAGAGTGTGTTTTATTTTTATTTATAATGCAATGTTTTGGTGGGCCTTTCTTGGTGTGATTCTACGTTATCCGCT
AACCAACCTATATTTATGTGGTGAAATTTCTATATCAGTGGTCGCATGTATTACAATATTGGTGCTACAATATTACATCA
TGGCGCGTTTTTTTGCAGATGGTGGGAGGGTGCGCGGGATTGATACGTTTTTACAGGCTGGTTGTTGCTGATTGACTTGA
AAAATCGTTGTCCCGGTCAAAATCGTAAACCAAATTCAAAATTG
>chr3A_877
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-------------------------TTCCTTTTGTCCACGCGACCTACGCCACCTCTTTTCCTTTCGTTTCGCTC-----
-CTCTTCTCTTCTCCCCTGTTCCAGAATCCAGAGCCCCCCACCGACCCCGACCCGCCCTCCCCGCCACGCCACCTCCACC
TCCACCTCCACGGCCT-----------CGCCATGCCGCCGCTGCCCACGATGACCCACTCCTCCTCCTTCCTCCTCCCGT
CCCC------GCCTCATCCCCCGGCCGACGCAACCGACGCCGAGAACGCGGTCTCCTACGCCGTCGTCGTCCTCAACCAG
CGCCTCCCGCGCTTCGCGCCCCTGCTCTGGACCCGAGGTACGTAACCAA-----CCAACCAACGCGCGCCCCTCCCTG--
--CCTCGCCTTTCTTCCGTGGGCATTATCGCCGCCTTCGCTTTCCGTCCTCGCGGACACGTTTTGACGCGCCCGGCTTGT
GTCGTCTCCCTCTCTCTCTGTTGT---------------------------CTGAGCAGCGCAGCTGCGGGTGTGCGCGG
ACGGCGGCGCCAACCGGGTCTTCGACGGCATGCCGGAGCTGCTCCCGGCCGAGGACCCCGACGAGGTCCGCCTCAGGTGA
TCCATCAAAGTCTTCTCCG---CCTTCCTCTTTTTTGTTTTTTTCTACCC--CGATAGCTGCGTGCCTACGCCTCCCACC
TGTTCATAGTTGACTCTGCCTCTCCGTGGATCAATGCCCATCACGTGCTTGTTGGAATGCGTCGGAGATGTACTAGCTGT
AAACAAAAAATTCCTTTTGGTTTCTATGCCTGTGCTGTTGCGTGCAAGCCTGAACGCTGGCATGCCAACGCATATAGCTG
TAAAAAAAAACTCACTCTGAA------------TTCGCTTCTCAATATACC----------------TTTTTTGGCACGC
CGCGTCTCGGCATCTGCCTTGTTTGTTTTAGCAATACTTACATTGTACTAGGACTACAGTTGGTATGGTGTGTGTTTAGT
CAAAAACTGCAAGTTACCCCTTATATGCCTTGCCCGCATGTGCTCGAGCACAAATTCAGAGTTTTCTTGAGACGAGACGC
AGCAACTACTTCGGCTAAAGAACTGTCAGTCTTTGCATCTGATGTAGTCTCTGTCATTTTTAAATGCCTAACACACATTT
TCATATGATTTTTCTTTTGAGATGGCATTTTATCTTCTTTTTGAAACATAT--------TACAATGTTCAACTCTGCTTG
GGTCATCTATCCATGTAATGCTCAAGAGCTGTTTATATGAAGGAAAAATGTTCTTAAGTTTGCCTAAGGTGCCACCAGAG
GGCTTGGCAGATTAAACCATACCACGGCGATATAGTATGCATCACATTTGAAATAG----TTTATACTGCATCAATG---
-GAACACATTTAGTTGTTCGCCCATGCCAAATACTACTAGTAGTTGGGAAGAGATTTA-AAAACCTATTTATTGGTAGTT
GGGAGGTAGGTTTAAGACAGA-TTTCTTTGCTGGTTGTTTGTATGTGACGATC----TCATTAATTTGTCCTTACCTTCC
TGCAGGTACAAGCCCGACGCAATCGAAGGAGATATGGATTCTGTAAGGCCAGAAGTGAAGGAATACTATTCCAGTTTGG-
---TAACTAATTTAAAACTCCCTTCATCATACCTTTCTGAAAACGAGATGCTGAAGCTGACAGCTGAACCAAAAAATCAT
ATTGTATGCAGCAACTGTCCAGGGCAGTTTCTATTA--------------------------------------------
------------------------------------------------------------------------TGTAAGGG
AGAAAGATATCATGCGTAGCAAAAATACAAGCAGAAAGATAGTATCATCTTTTAGCCGTCTTGGTCCACATGAATATGTT
TGTGATTCTGTTTTGGACCGTTGTGTGATGTTAGCTATAATGGGCTATAAAAATATCAGAACTTCATGTCTACAAGTTTA
GATGACTCTTACTGACACCAATGCGGGGAAGAAATCTATTTTCTTGTGTGAAATCAAACTGCTGAAATAATTACATTGAT
TAAGTTGTCCTAATTATCCTAGAAAACCAGGAAGGGAGCGATGCCTTGTTTTATTGTATTTTTTAGTAGGCTTTTGTTTC
TATACCAGTATTTTTGGTATGCTTGTCCTGGTAAATGCAAGTACTACTTCAGTGTTGATTAAATTGGCATGGCCAGTTGT
ATCCCT----GTGAAGGGAGCGATGCCTTGTTTTATTGTATTTTTTAGTAGGCTTTTGTTTCTGTACCAATATTTTT-GG
TATGTTTGTCCTGGTAAATGCAAGTACTATTTCAGTGTTGATTAAATTGGCATGATCAGTT-GTACCCCTAGCCGTGAAC
CTCAAGTTTCTTCCTGGAAATGTTGTGGAGTGGCAGCAGGGATAATGTAAATGTAAACCAAGTTTATGTACATTTGATTT
GCCCTGCTTTACTACTTTTT------GAGAGAGGCAACATGAATGTCAACGCTGGGCATTATTAGTATTCTGTACAATAG
ATGATTTTTCTGGTTTAAGATTAACCAATGAGGCCTTGAAACTGGGACAGGAACGATTGGTGACTTACAGCAAAATGATA
TAT-TGACAACACCCTTCTTTGATCAATTGCAGGGTACCCAAATAATCGACGATTCACATGATCAGGACACCACAGACTT
GAACAAGTGCATATCGTTCATCACCAAAAATCTGCCTGGGCCAGACAATTCTAATGTACACCAGATCAGTTACCAGTGTT
TACTCCAGATCAGTGTTTGCAACACCAGCTTTTTTACTGATGTTACTGTGTTTTGTGTAACTGCAGCTTTGCATTCTTGT
TCTTGGTGCGCTTGGAGGAAGGTTCGATCACGAGATGGGGAACATCAACGTACTGTATCGCTTCTCAAACACCAGGATCA
TCCTCCTGTCAGACGACTCCTCGATCTTCCTGCTCCCAAGGACGCACAGTCACGAGATCCGCATCGAGCGGTCGATCGAG
GGTCCTCATTGCGGGCTGATCCCCATGGGTGCGCCATCAAACAGCAGCACCACCACCGGTCTGCGATGGAACCTAGGTAC
AGGAATCTAAGCTAAAATGCAACCTCATTTTTGTATGGCAACAACATGATCTG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATAGCCCTGCTGAATTTCTCTCTCCAGATAGT
ACCAGCATGAAGTATGGTGGATTAATGAGCACATCAAACATTGTGGAGGACGAGATTGCAACGGTCACTTCGGATTCTGA
TTTGATTTGGACAATATCTCTTCGGAAACATGCTTAAATTGTGTTATTGTACAGTAGGTTATGGTCCAAATTTTGGCTCG
TCAGTTCTACGTGGAGGGGATTCGACAAATTTTATTGTGATGTGATGATATAGTTCATTCTATTAGATATTTGGCGGAAC
CGGAGGGACAGGTGTCCATGTATGTCAGCATCTTATTGTCTTATTTGTGCATTTCAAATTGTCAAAAAGCAACATGC---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>SNPs
-----------S----S-------S----------S----------S-S------------------S------------
----------------------S----------------------S---------S-----------S---S--------
----S--------------------------------------------------------S---------S--------
--------------------------------------------------------------------------------
---------------------------------------------------S----------S----S------------
--------------S-----------------S--SSSSSS---------S-------------------------S---
--------------------------------------------------------------------------------
------------------------------SS---SS--S----S--S----------------------------S---
----S-S---SSSSSSS-----------------------------------------------------SSSSSS----
-----------------------------------------------------------------S--------------
---------------S---SSSSSSS--SSSSSSSSSSSS-SSSSSSSSS-----------------SS-----------
--SS-----------------------------------------------------------S-------S---S----
--S--SS------------------S--SSSS-------------------------SS------------------S-S
S------------------------------------------------------------------------------S
--------------------------------------------S-----------------------------------
-------------------------------------------S--------S--------S----------------S-
------S-----S------------------S---------S----------S-----S---------S-----------
--SS----------------------------------------------------------------------------
------------------------------------------------------------------------SS------
--S---------------SSSS--------------SS-----S-S----SS----------------------------
----------------------------------------------------------------S---------------
--------------S---------------SS------------------------S----S--S-------S--S-SS-
-----------SS-S-SSS-SSSSSSSSSSSSS---------------S-SSSSSSSSSSSSSSSSS------------S
------------------S-------------------------------------------------------------
-----S--------SS---------------SS--S------S--S----S--S-SSSSS------------SSSS--SS
SSSS----S------S--S---S-S--S-----S-S--SS-------------SSS---SS-SSSSSS--------S---
----------------------------------S-S--------------------------S------S--------S
----S-----------------S-----------S----S-----------------S--SS-S-----S----------
--S---------------------------S-S--------------------------------------------SSS
S------------------------------------S--------------------S-----------------S---
---------------------S--------------------------------------------------------S-
--------------------S-----------------------------------------------S----------S
SSS-----------------------------------------------------------------------------
S-------------------S------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
----------------------------------------S---------------------------------------
--S---------------------------------SS----S-----SS-----------S---------S--------
---------S-------S---------S-----------------------------S----------------------
---S-------------------------S------------------------------------S-------------
-----S-S---------------S----------------------------S---------------------------
-S--------S------------S--------------------------------------------------------
----S------------S-------------------------------------SSSSS-S------------------
-------------------------------S--------S-----------------------S-SS-S----------
----------------------------S---S---S-------------S-----------------------------
--S---------------------------------------------S----S-----S--------------------
-SSS----S----------S---------------------------------S--------------------------
---------------S--------------------------------------------------------S-------
--------------------------------S--S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S-----------------S--------------------------
----------------------------------------------SSSSSSS---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------SSSSSSSSSSSSS---------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
------------------------------------------------------------------S-------------
---------------------------S--------------------------------------------S-------
--------------------------------------------------------------------------------
----------------------------------------------S-------------------------S-------
------SSS------------SSSSSSS-SSSS-SS-S-SSSS-SSSS---S-SSSSSSS--SSSSSSSSSSSSSS-SSS
SSS-S--SS-SSSSSSSSSS-SSSSSSSS-SS-SSSSSS-S-SS-SSSS---SSSS---SS--S--SSSSSS-SSS-SS-
------------------------------S----S--------S--S---SSSS-SSS-SSSS--SSSSSSSSSSSSS-
SS-SSSS-SS-SSSSSS-S-S-SSSS-SS-SS-SSSSSSSS-S-SSSSS-SS-SSSSSS--SSSSS-S-SSSSSS-S-SS
SSSSSSSSSS-S--SSSS-S----SSSS-S-SS-S-S-SSSSSSS-S-SS--SSSSSSSS-SSSS-SSSSSSS-S--SS-
SSSSSSSSSSSS-S-SS-SSSS--SS------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
---------------------------------------S---S---S---S--------------S---S---------
--------------------------S---------------S--------------S--------------------S-
------S-------S----------------------------------------S--SS--------------------
----------S-------------S----S-----S--------
>forward_838
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------CGATTTCGGGTCGAGAGGAG------------------------------------------
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--------------------------------------------
>reverse_2680
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---------------------------------------CCTCCGTCCGGAAATACTCG---------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>forward_986
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GTCTTCTCCCCTGTTCCAGC------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>reverse_2684
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-------------------------------------------CGTCCGGAAATACTCGTCGG-----------------
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--------------------------------------------
>forward_2674
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--------------CTGTCCGGGGCAGTTTCTAG----------------------------------------------
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--------------------------------------------
>reverse_3654
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-----------------------------------------------------CTCACATGATCAGGACACCACA-----
--------------------------------------------------------------------------------
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--------------------------------------------
>forward_2699
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---------------------------------------CCTCCGTCCGGAAATACTCG---------------------
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--------------------------------------------
>reverse_4793
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------------------------------------------------------------------------CGCGTCAG
GTGTCCTTGTAT--------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
