>input_sequence_21241
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---------------------------------------------------------CTCCTCACAAAAAAAAGGAAAAA
AAAGAAGCAACGGACGTTTAAGCTCCACATTAGCAAAGCCGCGTCCGTGCGTATAATAGCGAGCATCCACCCGCACCGCC
TCCCTCGTGTTCCCCCATCCCCACTGACGCCTCCTCCGCACGAAACACCGGCGCCGCACTCATCGGAGAGGAGGAAGCTC
CCGCCCCGGCTCGATCCGATGGCCAACAGCAACCTTCCTCGACGAATCATCAAGGTGAACTTCCGATCTGATCATCCGAG
CACAGATCTCTCGACTCCTTCGATCCGACTCGTCTTTTTTTTTCT-----GTGTCTAACTTTTTGGGATTTCCGTGTGGT
TGGATCTAC-GCAGGAGACGCAGAGACTTCTCAGCGAGCCAGGTGCGGTTGCTTTTCAATCTGCGGTTTCGGGTGGATTC
TGGCGAGGTGTTGCATTTCTGGGTTTGATTTCCGCTCTTTGAATGGG-TTGTTTGTGCAGCACCGGGGATCAGCGCTTCG
CCCTCGGAGGAGAACATGCGGTACTTCAACGTCATGATCCTTGGTCCGGCGCAGTCACCCTACGAAGGTATTTC------
--TTAATACATGATAGTGATGTTGTTTGTGATATGATGTGATAACTGTGGGGCTTGGAAGGTAC---TACGTCCGTTCAC
AAATATAAGATGTTCCGACTTTTTTTCTGAAATCGGATGTATATAGACACGTTTTAGTGTGTTTGTTCCCTCACTTCAGT
CCGTATGTACCCCATATTGAAATACCCAAAACATCTT-TATTCGTGAA-CGGAGGGAGTAGCAATTAGCTAATTGAGATG
ACTCTGTTCAAAACATTTTGTTAGAAATGGTTCTAAAATGGTTGTGTTGGAATTATGGATGTTGGAGGTTGTGCTGTTTG
ATCGGTCTGGTGATGTGGCCGTGTCAGTTTTACTTTATT-CTCTTCATGGCAGTTATCATGTTTGCTGGGTTTTACGTTC
TCTCTTTAGTATGTA-ATCAGTAGTGGATAGATTTTTGCTACTTGCTCCAAGCTTATTTGTAATGTCACACTTATTTCCA
TGGTTAATATTCTATTGATATGGATAGTG-------------------------TAACATATTTGCTTGCCTAAGCCCTT
TGGTGTTATTGGAGCCACCTGTATGCCATAGGAAAAA-CGTCTCTCGTCTTCTAATTATGGAGAATGACCAATTTAGCCT
AA--------TTTCCAATTATGGAAGCGAACTATAGTCGAATATTCTAATTACCAATCTTGGTTTTGTTTGTTTATATGG
ATTACCTTAATAGCTTATCTTCTGCATGATATATCTGTCATGAAAGGAATGTTTTATGTTGAAGTGTTAGCATTCTATTT
TATGACCGACTGGCTTTCTTACATTGTTCCCCTTTGCTTATCTATTGGGCAGGGGGAGTTTTTAAGCTGGAACTCTTTTT
ACCCGAGGAATATCCGATGGCTGCCCCAAAGGTAATA---ATCTGTAGATGAGATTTGGTTAATGTTTTCTACACAACTA
TTGGGCCTGTACACTTTTC--TACATAATTATGGTGTATTCAGAATTGTACAGTGTGATTTCCTCTTTGGCCAATATGCC
TGATTTCTTCTTTGGCTAATATGGCTTCGACTTTCTTTTACAAAGTTAACTACTTATGTTCT---------------CAT
TTACATTTCTTCGGTGGCGTTTCCAGCTTTGGATAATCAAAAAAGTGTTTGTTTGCTTGATTTGCGTGCAAGTTGTTCGA
AGCCTCATGCCTTATTGTTT-TGCACATTTGTTGTGTTACTGTTGACATTCACTGTGCTTTCATATGTTTTGTTGTGGTA
GTATATTATTGTATCAATCTCATTTCCCTGTCTAGACAATGTTAGCTGCTTT-ATTGGACATTTCATA-------TAGAA
ATGATGGGAGTGTGAAACATGTGCGGCATAAC--------GATTAACCCGTCAGGACAGCTAATTGGGTTAGCAGAAAGC
TCAGAAAACTTATCACTTGCACTAAGATCCTTCTCAAAGGTTTATGTCAAAGGTTATTTCTATATATTAGTCTAGTG--G
TTGTCGTGGTTCTAAATGTATTTGGTACTTCTAGTGGTTGCCATTTT----------CTATCAGTTGTGCACTGTTAAAG
AGGTCCTTCAATTTCTGTTATGTGCTTGGCAGTTAGACACTTTGAAGTATTAGTCTATTCTGATTTTGTATTTCCTTGAC
TTTACTATGTAATTTTTTTATAGAAGGATGAATAAGTAGCACTTAAGTTGTTAAGCAATTGCTACTGGAG----GTCTCA
CCCTTCCTTTGGTCTCTATAAAACTGCGCGCTGCTATATAGCATTTCTAATGCTTATAATCTTGGCGAACATTTATACTT
TGCTTGTTGGTAGCGCAGGTTAGGTTTCTGACCAAAATATACCATCCCAACATTGACAAGGTAAGCAGGCATGTTTTTTC
AGTGTTATGTTACTTTCTCCAGAAATGGTTATTCCTTAATGGATTTACCTTTGTAGCTTGGTAGGATATGCCTTGACATT
CTCAAGGATAAATGGAGTCCGGCTCTTCAGATTCGAACAGTTCTTTTGAGGTCCTC------TCTCTCTC--ATTCTGGG
TCTCTGTAACTTAGCATTTCATAATCT-TTTTTCTGAGCTGTTTCCTTTGCTATGTTTCTCCAAAAGAAAGTATTTATCT
TGAGCTTAATTAACCGAATAACCTGTTTGTAAATAA----AAATCACCCTGTCTCATTTTCCGGCACTAAAGTATTGTTC
CACACATTATCTGATTCTTGCTGTTA-----TATTTTTATATTTAATGCTGCACATTGCCGCCCTGTGACATTTTTCTGG
TTTCAGTATCCAGGCACTCCTAAGTGCACCAAATCCAGATGACCCTCTCTCTGAAAACATTGCTAAGCACTGGAAGTCCA
ATGAGGCAGAAGCTGTTGAAACAGGTAACAAGTGTGAAAATGTTGTCCCATTTGCCCTTGGGCCATGATATCTTAACTAA
GTTCTGTTCTGGCGTTTGCAGCGAAGGAGTGGACTCGTCTGTATGCCAGTGGTGCATGACAACCCCAT-GCCGCTCTCGA
TGTAATAATCCATCATACTTTAGCCAGCAATCAAGTGCCATTTTGTTGATAAGAACAAACTGGAGATGTTTGCGCTGGAA
GGGAGTATCTGAATGACTAGTGCTCGAGCTATTTGGTTGGTTGTAACACCTGTGTTGGTTGGTTCCCTTCACCCTGGGGC
ACCTTCTGACTGATCTGTATCTGATAGAACTTTCTATGCTCCTCCACTACAATACCCTTGTGTAGGAGAAGTTAACAAGT
GTCCACATTGTTGAAATTGAAGCTGGCTTGCTAATTTGTTCTTGCTCTTGTAGTTTGGGAGTTTGAATACTCAGGGTTGG
ATCTGATACGCCCG------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G305500
AATGTTCAAATGCAGCAGTAGTTCGCATATATAG----TAAAAGACCAACGTTTAGCACTGTCTAAGGTTGGAGCCGCCT
TACCAACGCCTAGCACCGGGCAACGAGCCTGTGCTTCGGGTCGAGACGGGAGCACACGTTCTTGACCCGTGTCGCGCCTG
GCCCAACATGCGGTTAAGCAGGCGATGCCTTGACCCGCGAGGCGAGGCCCACATGCCGGATGACACGACTTTT-------
-----TTTTCTTTTTGAACATCCTAAGAGGTTAAAAATTGGCAATATTTTTTTCCAGAAATCTCACCTGCTTTGTTTATT
CAGAAGCAATTGTCATAGGTACAAGATTTGGGTCATGGGGATGGCCTAACCAAACATGTCTATCTATATCTAGGTTACAA
GTAAACTTGGCGAGATTATGAGCTTCATAATTGAAGTTCCTACGCTCGAAAACAAAAAAGCAAGAAATAAAGCTATTACA
GTGGTTCATTATTTCATGTACCAACCCTGCATTAGGGCCTCCTGTTCCCTGTTGATGTCATTTACCGCCTCTTGACAGTC
CGATGCCACACAAATCTTCTGCTGTCCCAGGTCATCCGCCAAAGCAAGCGCCTCACGGCATGCATATGTCTTCAAAGTTA
ACGGATCCGTGATCCCATAGTATACCATCGCCGATGACCCCAAATAATGTCCATCCTGGTCGCGGCAAAGGGCTGCAACT
GACCCCAAATAAAAGGCTGAATAGCGCATGGGCCAACCAGCACATGTGTCGTACCTAAGCAGCCCGTTTAGTTCATGTGT
TCTTCTCAAAAAAAAAAAACTTAGTTCATGTGTCGTGCCTGGGCCACAAGACGAGGCACATTCTTTTTTTTTAAGAAACA
CGAAGTGGGGCCTCGGCGTGCCGTGCCGTGCCAGGCCCTTTTACT-CGTGGGTCGGCCGGGCCGGCCCCTTGGCCAGGTC
TGACTCACCGGGATAAAACTTGAGCTCTGTGGAATGGAATAAAGCAACGAACGTGTTCTCCTCACAAAAAAAAGGAAAAA
AAAGAAGCAACGGACGTTTAAGCTCCACATTAGCAAAGCCGCGTCCGTGCGTATAATAGCGAGCATCCACCCGCACCGCC
TCCCTCGTGTTCCCCCATCCCCACTGACGCCTCCTCCGCACGAAACACCGGCGCCGCACTCATCGGAGAGGAGGAAGCTC
CCGCCCCGGCTCGATCCGATGGCCAACAGCAACCTTCCTCGACGAATCATCAAGGTGAACTTCCGATCTGATCATCCGAG
CACAGATCTCTCGACTCCTTCGATCCGACTCGTCTTTTTTTTTCT-----GTGTCTAACTTTTTGGGATTTCCGTGTGGT
TGGATCTAC-GCAGGAGACGCAGAGACTTCTCAGCGAGCCAGGTGCGGTTGCTTTTCAATCTGCGGTTTCGGGTGGATTC
TGGCGAGGTGTTGCATTTCTGGGTTTGATTTCCGCTCTTTGAATGGG-TTGTTTGTGCAGCACCGGGGATCAGCGCTTCG
CCCTCGGAGGAGAACATGCGGTACTTCAACGTCATGATCCTTGGTCCGGCGCAGTCACCCTACGAAGGTATTTC------
--TTAATACATGATAGTGATGTTGTTTGTGATATGATGTGATAACTGTGGGGCTTGGAAGGTAC---TACGTCCGTTCAC
AAATATAAGATGTTCCGACTTTTTTTCTGAAATCGGATGTATATAGACACGTTTTAGTGTGTTTGTTCCCTCACTTCAGT
CCGTATGTACCCCATATTGAAATACCCAAAACATCTT-TATTCGTGAA-CGGAGGGAGTAGCAATTAGCTAATTGAGATG
ACTCTGTTCAAAACATTTTGTTAGAAATGGTTCTAAAATGGTTGTGTTGGAATTATGGATGTTGGAGGTTGTGCTGTTTG
ATCGGTCTGGTGATGTGGCCGTGTCAGTTTTACTTTATT-CTCTTCATGGCAGTTATCATGTTTGCTGGGTTTTACGTTC
TCTCTTTAGTATGTA-ATCAGTAGTGGATAGATTTTTGCTACTTGCTCCAAGCTTATTTGTAATGTCACACTTATTTCCA
TGGTTAATATTCTATTGATATGGATAGTG-------------------------TAACATATTTGCTTGCCTAAGCCCTT
TGGTGTTATTGGAGCCACCTGTATGCCATAGGAAAAA-CGTCTCTCGTCTTCTAATTATGGAGAATGACCAATTTAGCCT
AA--------TTTCCAATTATGGAAGCGAACTATAGTCGAATATTCTAATTACCAATCTTGGTTTTGTTTGTTTATATGG
ATTACCTTAATAGCTTATCTTCTGCATGATATATCTGTCATGAAAGGAATGTTTTATGTTGAAGTGTTAGCATTCTATTT
TATGACCGACTGGCTTTCTTACATTGTTCCCCTTTGCTTATCTATTGGGCAGGGGGAGTTTTTAAGCTGGAACTCTTTTT
ACCCGAGGAATATCCGATGGCTGCCCCAAAGGTAATA---ATCTGTAGATGAGATTTGGTTAATGTTTTCTACACAACTA
TTGGGCCTGTACACTTTTC--TACATAATTATGGTGTATTCAGAATTGTACAGTGTGATTTCCTCTTTGGCCAATATGCC
TGATTTCTTCTTTGGCTAATATGGCTTCGACTTTCTTTTACAAAGTTAACTACTTATGTTCT---------------CAT
TTACATTTCTTCGGTGGCGTTTCCAGCTTTGGATAATCAAAAAAGTGTTTGTTTGCTTGATTTGCGTGCAAGTTGTTCGA
AGCCTCATGCCTTATTGTTT-TGCACATTTGTTGTGTTACTGTTGACATTCACTGTGCTTTCATATGTTTTGTTGTGGTA
GTATATTATTGTATCAATCTCATTTCCCTGTCTAGACAATGTTAGCTGCTTT-ATTGGACATTTCATA-------TAGAA
ATGATGGGAGTGTGAAACATGTGCGGCATAAC--------GATTAACCCGTCAGGACAGCTAATTGGGTTAGCAGAAAGC
TCAGAAAACTTATCACTTGCACTAAGATCCTTCTCAAAGGTTTATGTCAAAGGTTATTTCTATATATTAGTCTAGTG--G
TTGTCGTGGTTCTAAATGTATTTGGTACTTCTAGTGGTTGCCATTTT----------CTATCAGTTGTGCACTGTTAAAG
AGGTCCTTCAATTTCTGTTATGTGCTTGGCAGTTAGACACTTTGAAGTATTAGTCTATTCTGATTTTGTATTTCCTTGAC
TTTACTATGTAATTTTTTTATAGAAGGATGAATAAGTAGCACTTAAGTTGTTAAGCAATTGCTACTGGAG----GTCTCA
CCCTTCCTTTGGTCTCTATAAAACTGCGCGCTGCTATATAGCATTTCTAATGCTTATAATCTTGGCGAACATTTATACTT
TGCTTGTTGGTAGCGCAGGTTAGGTTTCTGACCAAAATATACCATCCCAACATTGACAAGGTAAGCAGGCATGTTTTTTC
AGTGTTATGTTACTTTCTCCAGAAATGGTTATTCCTTAATGGATTTACCTTTGTAGCTTGGTAGGATATGCCTTGACATT
CTCAAGGATAAATGGAGTCCGGCTCTTCAGATTCGAACAGTTCTTTTGAGGTCCTC------TCTCTCTC--ATTCTGGG
TCTCTGTAACTTAGCATTTCATAATCT-TTTTTCTGAGCTGTTTCCTTTGCTATGTTTCTCCAAAAGAAAGTATTTATCT
TGAGCTTAATTAACCGAATAACCTGTTTGTAAATAA----AAATCACCCTGTCTCATTTTCCGGCACTAAAGTATTGTTC
CACACATTATCTGATTCTTGCTGTTA-----TATTTTTATATTTAATGCTGCACATTGCCGCCCTGTGACATTTTTCTGG
TTTCAGTATCCAGGCACTCCTAAGTGCACCAAATCCAGATGACCCTCTCTCTGAAAACATTGCTAAGCACTGGAAGTCCA
ATGAGGCAGAAGCTGTTGAAACAGGTAACAAGTGTGAAAATGTTGTCCCATTTGCCCTTGGGCCATGATATCTTAACTAA
GTTCTGTTCTGGCGTTTGCAGCGAAGGAGTGGACTCGTCTGTATGCCAGTGGTGCATGACAACCCCAT-GCCGCTCTCGA
TGTAATAATCCATCATACTTTAGCCAGCAATCAAGTGCCATTTTGTTGATAAGAACAAACTGGAGATGTTTGCGCTGGAA
GGGAGTATCTGAATGACTAGTGCTCGAGCTATTTGGTTGGTTGTAACACCTGTGTTGGTTGGTTCCCTTCACCCTGGGGC
ACCTTCTGACTGATCTGTATCTGATAGAACTTTCTATGCTCCTCCACTACAATACCCTTGTGTAGGAGAAGTTAACAAGT
GTCCACATTGTTGAAATTGAAGCTGGCTTGCTAATTTGTTCTTGCTCTTGTAGTTTGGGAGTTTGAATACTCAGGGTTGG
ATCTGATACGCCCGAATATTTTCTCAGTCCCTCGCCTGTGTTTTCTTTTTGTTGTTGTTGAGCTGCCCTGG---------
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---TTTATTTGTTACTCAAACGTGGCCGTTCAGTTCGTCTGCCTGTCTAACCTCCTTCCTCTCAAGTCCTTGTCGCAGTG
ACGCGTTGAATTGTTTGCCTCAACGGCTCAAACACAGCCAAATATCCGATGGTTTAGCCGGACTAATCTTGCTTACTGCC
TCCCGCTACAGGAGCCGATACAGCAACTGAGCCTTGCTGCTCGAGTGTGGCAGCGCGTTGCCCGCCAGCGCACACCAGAA
ACAGAAAGCCACAGCTCGTGCTACGGCGACAGCCGACAAGTTGCAACAAAACCTACTTGTCCGTCGACGGAAGAAATGTT
TCCACCCACGAGAAGGCAGATGTGGGC-GCGACGTATTGCCCTGTCACAGACGGCTTCATTTGCTGTCAGTTCCCACGGA
ATACGGCCTATATTTATGGCTAAACAGCAGCACTACGCCGTCTCACGCAGACGCAGAGCGAAGCACATCGGCGCACAGGA
CTAGCATGCAGTGTACCGTGCAGGTTAAACAAAGGACCCTCTCCCCCGCAAAAAAAAAAAAAAAACAAAGGACCCTCTTA
TCTTGCGAAAGGGGTGACAATAGTGAACGTTTTGGCTGGTAATTTACGTTATGGGAGGATGACAATTTCTTTAGAAACAC
ATGGCAGCTTCTGAAAAGAAGAAAAAAAAGAT-TTGCTGCAATAAAGGAAGGATTTGCCATCTTCCACCATGTAAACTTG
CCATAGAAAAACGTTGGCTT-GCCACCCTCTTCCAACCGAACGTTCGACAGATAACAATACCGTAGATAAATGACAGCA-
----GAAAGAAAAACACGGTATATGCTACTCCCCGGGGACA---------------------------------------
TCTCACTGGCATGGCACTCACGGGGCAAAACCCTGGGGGCACCCACCGGTCAGTCCAAGGCGCAGGACGCCGGTAAAACC
CATCATAAGTCTCCTCTCCTCCCCGGAGCGTCT
>chr3D_1
AATGTTCAAATGCAGCGGTAGTTCACATATATATAGTCTAAAAGACCAACGTCTAGCACTGGCCAAGGCTGGAGCTGCCT
GACCGACGCCTGGCACCGGGCAACGAGCTTGTGCTTCGGGTCGGGACGGGAGCACGCGTTCTTGACCCCTGTCGTGCCTG
GCCCGACATGCGGCTAAGCAGACGGTGCCTTGACCCGCGAGGCGAGGCCCACATGCTGGCATGGCACGACCTTTTTTCCT
TTTCCTTTTCTGTTTTAACGTCCCAAAACGTTAAAAATTGGCAAAATATATAAAG-------------------------
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--------------GGCTGAATAACACATGGGCCAACCAGCACATGTGTCGTACCGAGGCGGTCCAT-------------
--------------------TTAGCTCATGTGTCGTGCCTGGGCCACAAGACGAGGCACT---TTTTTTTTCGAGAAACA
CGAGACGAGGCCTCAACGTGCCGTGCCGTGTCAGGCCGTATTTTACGGTGGGTTGGCCGGGCCGGCCCCTAGGCCAGGTC
TGACTCACCGGGATAAAACTTGAGCACTGTGGAATGGAATAAAGCAACGGACGTGTTCTCCTA------------AAAAA
AAAGAAGCAACGGACGTGTAAGCTCCACATTAGCAAAGCCGCGTCCGTGCGTATAATAGCGAGCATCCACCCGCACCGCC
TCCCCCGTGTTCCCCCATCCCCACTGACGCCTCCTCCGCACGACACACCGGCGCCGCACTCATCGGAGAGGAGGAAGCTC
CCGCCCCGGCTCGATCCGATGGCCAACAGCAACCTTCCTCGACGAATCATCAAGGTGAACTTCCGATCTGATCATCCGAG
CACAGATCTCTCCACTCCTTCGATCCGACTCGTCTTTTTTCCTTTTTCCCGTGTCTAACTTTTTGGGATTTCCGCGTGGT
TGGATCTACCGCAGGAGACGCAGAGACTCCTCAGCGAGCCAGGTGCGGGTGCTTTTCAATCTGCGGTTTCGGGTGGATTC
TGGCGACGCGTTGCATTTCTGGGTTTGATTTCCGCTCTTTGAATGGG-TTGTTTGTGCAGCGCCGGGGATCAGCGCTTCG
CCCTCGGAGGAGAACATGCGGTACTTCAACGTCATGATCCTTGGTCCGGCGCAGTCGCCCTACGAAGGTATTTC------
--TT------CGATAGTGATGTTGTTTGTGATATGATGTGATAACTGTGGGGTTTGGAAGGTACTAGTACGTCCGTTCAC
AAATATAAGATGTTCTAACTTTTTTTCTG-AATCGGATGTATATAGACATGTTTTGGTGTGTTTGTTTACTCAGTTCAGT
CCGTATGTACTCGACATTGAAATATCCAAAACATCTTATATTTGTGAA-CGGAGGGAGTAGCAATTAGCGAATCGAGATG
ACTCTGTTCAAAACCTTTTGTTAGAAATGGTTCCAAAATGGTTGTGTTGGAATTATGGATGGTGGAGGTTGTGCTTTTTG
ATCAGTCTGGTGATGTGGCCGTCTCAGTTTTAATTTATTCCTCTTCAGGGCAGTTATCATGTTTGATGAGTTTTACGTTC
TCTCTTTAGTATGTA-ATCAGTAATGGATAGAATTTTGCTACTTGCTCCAAGCTTATTTGTAATGTCCCACTTATTTCCG
TGGTTAATATTGTATTGATATGGATGCCATATATTATGCATAGTGTTA--------ACATATTTGCTTGCTTAAGCCCTC
CGGTGTTATTTGAGCCACCTGTATGCCATAGGAAAAAACGTTCCTCATCTTTTAATTA--GAGAATGACTAATTTAGCCT
AATGAACTTGTTTCCAATTATGGAAGTGAACTATAGTCGAATATTCTAATTACCAATCTTGGTTGTGTTTGTTTATATGG
ATTACTTTAATAGCTTATCTTCTGCACGATATATCTGTCATGAAAAGAATGTTTTATGTTGAAGTGTTAGCATTCTATTT
TATGACCGACCGGCTTTCTTACATTGTTTCCCTTTGCTTATCTATTGGGCAGGGGGAGTTTTTAAGCTGGAACTCTTTTT
ACCCGAGGAATATCCGATGGCTGCCCCAAAGGTAATAATCATCTGTAGATGAGATTTGGTTAATGTTTTCTACACAGCTA
CTGTCCCTGTACACTTTTTTTTACATAATTACGTTGTATTCAGAATTGTACAGTGTGATTTCCTCTTTGGCCAATATGGC
TGATTTCTTCTTTGGCTAATATGGCTTCGACTTTCTTTTGCAAAGTTAAGTACATATGTTCAAGGGCTGGTCAACTGCAT
TTAGATTACTTCGGTGGCGTTTCTAGCTTCGGATAATCAAAAAAGTGTTTGATAGCTTGATTTGCGTGCAAGTTGTTTGA
AGCCTCATGCCTAATTGTTTGTGCACATTTGTTGTGTTACTGTTGACATTCACTGTGCTTTCATATGTCCTGTTGTGGTA
GTATATTATTGTATCAATGTCATTTCCCTGTCTAGACAATTTTAGCTGCTTTGATTGGACATTTCATAAAAAATATAGAA
ATGAT-GGAGTGTAAAACATGTGCGGCCTAAATGCCTAATGATTAACCCGTCAGGACACCTAATTGGGTTAGCAGAAAGC
TCAGAAAAATTATCACTTGCCCTAAGATCCTTTTTGAAGGTTTATGTCAAAGGTTATTTCTATATATTAGTCTAGTG--G
TTGTTGTGGTTCTAAAC-------GTACTTCTAGTTGTTGCCATTTTTCTATCGGTTCTATCAGTTGC------------
------------------------------------------------------CTATTCTGATTTTCTATTTCCTTGAC
TTTACTATGTAA-TTTTTTATAGAAGGATGAATAAGTAGCGCTTAAGTTGTTAAGCAATTGTTACTGGAGTACAGTCTCA
CCTTTCCTTTGGTCTCTATAAAACTGCGCTGA--TATATAGCATTTCTAATGCTTATAATCTTGGTGAACATTTATACTT
TGCTTGTTGGTAGCGCAGGTTAGGTTTCTGACCAAAATATACCATCCCAACATTGACAAGGTAAGCAGGCATATTTCTGC
AGTGTTATGTTACTTTCTCCAGAAATGGTTATTCCGTAACAGATTTACCTTTGTAGCTTGGTAGGATATGCCTTGACATT
CTCAAGGATAAATGGAGTCCGGCTCTTCAGATTCGAACAGTTCTTTTGAGGTCCTCTCTCTCTCTCTCTC--ATTCTGGG
TCTCTGTAACTTAGCATTTCATAACCT-TTTTTCTGAGCTGTTTCCTTTGCTTTGTTTCTCCAAAA--------------
------------------TAACCTGTTTGTAGCATTAAATAAATCACCCTGTCTTAGTTTCCGGCGCTAAAGTATTGTTC
CACACAGTATCTGATTCTTGAGAATTGCTGTTATTTTTTTATTTAATGCTGCACAGTGCCGCCCCGTGACATTTTTCCGG
TTTCAGTATCCAGGCACTCCTAAGTGCACCAAATCCAGATGACCCTCTGTCTGAAAACATTGCTAAGCACTGGAAATCCA
ACGAGGCAGAAGCTGTTGAAACAGGTAACAAGTGTGAAAATGTTGTCCCCTTTGCCCTTGGGCCATGATATCTTAACTAA
GTTCTGTTCTGGCGTTTGCAGCGAAGGAGTGGACTCGTCTGTATGCCAGTGGTGCGTGACAACCCCCACGCCGCTCTTGA
TGTAATAACCCATCATACTTTAGCCAGCAATCAAGTGCCATTTTGTTGGTAAGAACAAACTGGAGATGTTTGCGCTGGAA
GGGAGTATCTGAATGACTAGTGCTCGAGCTATTTGGTTGGTTGTACACCCGC-GTTGGTTGGTTCCCTTCACCCTGGGGC
ACCTTCTGACTGATCTGTATCTGATAGAACTTTCTATGCTCCTCCACCACATTACCCTTGTGTAGGAGAAGTCAACAAGT
GTCGACATTGTTGAAATTGAAGCTGGCTTGTTAATTTGTTCTTGCTCTTGTAGTTTGGGAGTTTGAATACTCAAGGTTGC
ATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTTCTTTGTTACTCAAACGTGGCCGGTCAGTTAGTCTGCCTGTCTAACCTCCTTCCTCT------------------
-----TTGAATTGTTTGCCTTGACGGCTCAAACGCAGCCAAATTTCCGCTGGTTTAGCTGGACCAATCTTGCTACA---C
TGCCACTACAGGAGCCAATACAGCAACTGAGCCTTGCTGCTCGAGTGTGGCAGCGCGTTGCCCGTCAGCGCACACCAGAA
ACAGAAAGCCACAGCTCGTGCTACGGGGACAGTCGACAAGTTGCAACAAAACCTACTTGTCCGTCGACAGAAGAAATATT
TCCACCCACGAGAAGGCGGATG---------------TGCCCTGTCACAGACGGCTTCATTTGGTGTCAGTTTCCACGGA
ATACGGCCTATATTTATGGCTAGACAGCAGCGCTACGCCGTCTCACGCAGGGCGAAA------CACATCGGCGCACAGGA
CTAGCATGCAGTGTACCGTGCAGGTT------------------------------------AAAAAAAGGACCCTCTTA
TCTTGCGAAAGGGGTGATT---GTGAACGTTTTGGCTGGTAATTTACGTTATGGGAGGGTGCCAGTTTCT---------C
ATGGCAACTTCTGAAAAAAAGAAAAA---GAT-TTGCTGCGATAAAGAAAGGATTTGCCATCTTCCACCACGTAAACTTG
CCATAGAAAAACGTTGGCTT-GCCACCCTCTTCCAAGCGAACGTTCGACAGATAACAATACCGTAAATAAATGACAGCAG
AAAGGAAAGAAAAACACGGTATATGCTAATGCTAGTACTACAGTCTACAAAGCGTGTACTGTATACGACGGAGACCTCAC
TCTCACTGGCATGGCACTCACGGGGCAAAACCC----------CACCGGCCAGTCCAAGCCGCAGGACGCCGGTAAAACC
CATCATAAGTCTCCTCTCCTCCCCGGAGCGTCT
>chr3A_891
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--------------------------CGTGCCAGGCCCTTTTACG-GGTGGGTCGGCCGGGCCGGCCCGTTGGCCAGGTC
TGACTCACCGGGATAAAACTTGAGCACCGTGGAATGGAATAAAGCAACGAAAAAAAAAGCA-------------------
--------AACGGACGTGTAAGCTCCACATTAGCAAAGCCGCGTCCGTGCGTATAATAGCGAGCATCCACCCGCACCGCC
TCCCCCGTGTTCCCCCATCCCCACTGACGCCTCCTCCGCACGACACACCGGCGCCGCACTCATCGGAGAGGAGCAAGCTC
CCGCCCCGGCTCGATCCGATGGCCAACAGCAACCTTCCGCGACGAATCATCAAGGTGAGCTTCCGATCTGATCATCCGAG
CACAGATCTCTCCACTCCTCCGATCCGACTCGTCTTTTC----TTTTCCCGTGTCTAACTTTTTGGGGTTTCCGCGTGGT
TGGATCTACCGCAGGAGACGCAGAGACTCCTCAGCGAGCCAGGTGCGGGTGCTTGTCAATCTGCGGTTTCGGGTGGATAA
TGGCGAGGTGTTTCATTTCTGGGTGCGATTTCCGCTCTTTGAATGGTTTTGTTTGTGCAGCACCGGGGATCAGCGCTTCG
CCCTCGGAGGAGAACATGCGCTACTTCAACGTCATGATCCTTGGTCCGGCGCAGTCGCCCTACGAAGGTTTTGTTCTTCC
TTTTAATACACGATAGTGATGTTGTTTGTGATATGATGTGATAACTGTGGGGCTTGGAAGGTAC---TACGCCCGTTCAC
AAATATAAGATGTTCTAACTTTTTCTCTGAA-TCGGATGTGTATAGACACCTTTTAGTGTGTTTGTTCACTCACTTCAGT
CCGTGTGTACTCTACATTGAAATATCCAAAACATCTTATATTTGTGAATCGGAGGGAGTAGCAATTAGCGAATCGAGATG
ACTCTGTTCAAAACCGTTTGTTAGAAATGGTTCTAAAATGGCTGTGTTGGAATTATGGATGGTGTAGGTTGTGCTGTTTG
ATCAGTCTGGTGATGTGGCCGTGTAAGTTTTAGTTTATTCCTCTTCATGGCAGTTATCATGTTTGATGGGTTTTACGTTC
TCTCTTTAGTATGTACATCAGTAATGGATAGATTTTTGCTACTTGCTCCAAGCTTATTTGTAATGGCACACTTATTTCCA
TGGTTAACATTGTATTGATATGGATGCCACATATTATGCATAGTGTTAAACTGTTAACATATTTGCTTGCTTAAGCCCTT
TGGTGTTATTCGAGCCACCGGCATGCCATAGGAAAAAACGTCTCTCATCTTTTAATTATGGAGAATCACTAATTTAGCCT
AATGAACTTGTTTCCAATTATGGAAGTGAACTATAGTCGAATATTCTAATTACCAATCTTGGTTGTGTTTGTTTATATGG
ATTACCTTAATAGCTTATCTTCTGCATGATATATCTGTTATGAAAGGAATGTTTTATGTTGAAGTGTTAGCATTCTATTT
TATGGCTGACCGGCTTTCTTACATTGTTCCCCTTTGCTTATCTATTGGGCAGGGGGAGTTTTTAAGCTGGAACTCTTTTT
ACCCGAGGAGTATCCGATGGCTGCCCCAAAGGTAATAATC---TGTAGATGAGATTTGGTTAATGTTATCTACAC-----
-------------------TTTACATAATTATGTTGTATTCAGAATTGTAGAGTGTGACTTCCTCTTTGGCTAATATGGC
TGATTTCTTCTTTGGCTAATATGGTTTCGACTTTCTTTTGCGAAGTTAAGTACTTATGTTCAAGGGCTGGTCAACCGCAT
TTAGATTACTTCGGTGGGGTTTCCAGCTTTGGATAATCAAAAAAGTGTTTGATAGCTTGATTTGCGTGCAAGTTGTTTGA
AGCCTCATGCCTAATTGTTTGTGCACATTTGTTGTGTTACTGTTGACATTCACTATGCTTTCATATGTCCTGTTGTGGTA
GTATATTATTGTATCGCTCTCATTTCCCTGTCTAGACAACTTTAGCTGCTTG-ATTGGAC--------------ATAGAA
ATGAT-GGAGTGTGGAACATGTACAGCCTAAATGCCTAATGATTAACCCGTCAGGACAGCTAATTGGGTTAGCAGAAAGC
TCAGAGAAATTTTCACTTGCACTCAGATTCTTTTTGAAGGTTTATGTCAAAGATTATTTCTATATATTAGTCTAGTATAG
TTGTCGTGGTTCTATAG----------------------------------------------GTTGC------------
------------------------------------------------------CTATTCTGATTTTGTATTTCCTTGAC
TTTACTATGTGA-TTTTTTATAGAAGGATGAATAAGTAGCACTTAAGTC---AAGCAATTGCTACTGGAGTACAGTCTCG
CCCTTCCTTTGGTCTCTATAAAACTGCGCGCTGCTACATAGCATTTCTAATGCTTATAATCTTGGCGAACATTTATACTT
TGCTTGTTGATAGCGCAGGTTAGGTTTCTGACCAAAATATACCATCCCAACATTGACAAGGTAAGCAGGCATGTTTT--C
AGTGTTATGTTACTTTCTCCAGAAATGGTTATTCCTTAACGGATTTACCTTTGTAGCTTGGTAGGATATGCCTTGACATT
CTCAAGGATAAATGGAGTCCGGCTCTTCAGATTCGAACAGTTCTTTTGAGGTCCTCTCTCTCTCTCTCTCTCATTCTGGG
TCTCTGTAAGCTAGCATTTCATAACCTCTTTTTCTGAGCTGTTTCCTTTGCTATGTTTCTCCAAAAAAAAGTATTTATCT
TGAGCTTAATTTACCGAATAACCTGTTTGTAGCATTAAATAGATCACCCTGTCTCAGTTTCCGG----------------
--CACAGTATCTGATTCTCGAGAATTGCTGTTATTTTTATATTTAATGCTGCACATTGCCGCCCTGTGACATTTTTCTGG
TTTCAGTATCCAGGCACTCCTAAGTGCACCAAATCCAGATGACCCTCTCTCTGAAAACATTGCTAAGCACTGGAAGTCCA
ATGAGGCAGAAGCTGTTGAAACAGGTAACAAGTGTGAAAATGTTGTCCCATTTGCCCTTGGGCCATAATATCTTAACTAA
GTTCTGTTCTGGCGTTTGCAGCGAAGGAGTGGACTCGTCTGTATGCCAGTGGTGCATGACAACCCCAT-GCCGCTCTTGA
TGTAATAACCCATCATACTTTAGCCAGCAATCAAGTGCCATTTTGTTGGTAAGAACAAACTGGAGATGTTTGCGCTGGAA
GGGAGTATCTGAATGACTAGTGCTCGAGCTATTTGGTTGGTTGTACACCCGC-GTTGGTTGGTTCCCTTCGCCCTGGGGC
ACCTTCTGACTGATCTGTATCTGATAGAACTTTCTATGCTCCTCCACCACATTACCCTTGTGTAGGAGAAGTTAACAAGT
GTCCACATTGTTGAAATTGAAGCTGACTTGTTAATTTGTTCTTGCTCTTGTAGTTTGGGAGTTTGAATACTCAAGGTTGC
ATCTGATACGCCCAAATATTTTCTCAGTCCCTGCCCTGTTTTTTTTAGCTA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCAGTG
ACGCGTTGAATTGCTTGCCTCGACGGCTCAAACACAGCCAAATATCGGATGGTTTAGCCGGACCAATCTTGTTT-A---C
TGCCAGTACAGGAGCCAATACAACAACCGAGCCCTGCTGCTCGAGTGTGGCAGCGCGTTGCCCGTCAGCGCACACCAGAA
ACAGAAAGCCACAGCTCGTGCTACGGCGACAGCCGACAGGTTGCAACAAAACCTGCTTGTCCGTCGACGGAAGAAATGTT
TCCACCCACGAGAAGGCTGATGTGCGCGGCGACGTACTGCCCTGTCACAGACGGCTTCATTTGCTGTCAGTTTCCACGGA
ATACGGCCTATATTTATGGCTAGACAGCAGCACTACGCCGTCTCACGCAGGGCGACA------CACATCAGCACACAGGA
CTAGCATGCAGTGTACCGTGCAGGTT------------------------------------AAATAAAGGACCCTCTTA
TCTTGCGAAAGGGGTGACAATAGTGAACGTTTTGGCTGGTAATTTACGTTATGGGAGGGTGACAATTCCTTCAGAAACGC
ATGGCAACTTCTGAATGAAAAAGAAGAAAATGATTTCTGCGATAAAGGAAGGATTTCCCATCTTTCACCACGTAAACTTG
CCATAAAAAAACGTTGGCTTTGCCACCCTCTTCCAAGCCAACGTTCGCCAAATAAATTACGGCAGATA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>SNPs
----------------S-------S--------S------------------S--------S-S----S------S----
S---S------S----------------S--------------S-----------S------------S-----S-----
----S--------S-------S--S-------------------------------S--SSSSSSSSSSSS---------
-----------S---S---S---S--S-S---------------S--S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS---------S-S-----------------------------S-S--S-S--S-SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS----S----------------------------------SSSS--------SS-------
---SSS-S------SS----------------------------S-S---------------------------------
-------------------------S------------------------------------SSSSSSSSSSSSS-----
-----------------S--------------------------------------------------------------
----S--------------------------------------S------------------------------------
--------------------------------------------------------------------------------
------------S---------------------------SS-S------------------------------S-----
----------------------------S-------------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
----------S---------------------------------------------------------------------
---------------SS---------------------------------------------------S-----------
----------S-S-S---------S-----------------S--------------------------S---S------
--------------S----------------------------------------------S------------------
---S----------------------------S--------------------------------S--------------
-----------------------S--------------------------------------------------------
-----------S-------------SSSS-----------------------------------------S---------
----------S-----------------------------------S----S-----------------S----------
--------------------------S-------------------------------------S---------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
----------------------------------------------------------------------------S---
S--SS-------------S--------------S--------------------------------------------S-
---------------------------------------S---------S-----------S------------------
---S---S-------------------------------------------S-S-----------------------S--
------------S-------------------------------------------------------SS----------
----------------------------------------S---------------------------------------
-----S---------------------S---S------------------------------------------------
--------S-----------------------S-SS--------------------------------------------
----------------SSSSSSSS-----------S-------------------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
------------------------S-----------------------------------------S-------------
-----------S-------------------SSSSS--------------------S--------S--------------
------S-------------SSSS-S------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
--------S---------------------------------------S-------------------------------
---------------------------------------------SSS--SSS---------------------------
-----------------------------------------------S---S----------------------------
------------------------------S------------------------------------------S-----S
-------------S------------------SS-----S----S-SSS-SSSSSSSSSSSSSSSSSSSSS---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S---------------------S------S--------------------------SSSSSSSSSSSS------
---------------------S-----------------------------------------S----------SSSSS-
-S--S-----------S-----------------------------------------------S---------------
--------------------------------------------------------------------------------
-----------------S------S-----------S-----------------------------------S-------
----------------------S---------------------------SSSS-S-SSSSSS-----------------
--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------------
----------------------------------------------------------S------------S------S-
------S----------S----------------------S-----------------------------S---------
------------------------------------S----------------------------S--------------
----------------------------S-S-SS-SSSSSS---------------------------------------
---------------------------------SSSSSSSSSS------S---------S--------------------
---------------------------------
>forward_569
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------TCTTGACAGTC
CGATGCCAC-----------------------------------------------------------------------
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>reverse_2171
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----------GGAGCCACCTGTATGCCATA--------------------------------------------------
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---------------------------------
>forward_574
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------ACAGTC
CGATGCCACACAAA------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------
>reverse_2561
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TTGGGCCTGTACACTTTTCTACA---------------------------------------------------------
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---------------------------------
>forward_776
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------------------------------------CCAGCACATGTGTCGTACCT------------------------
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---------------------------------
>reverse_2774
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-----------------------------------------------------TGCTTGATTTGCGTGCAAGT-------
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---------------------------------
>forward_789
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-------------------------------------------------CGTACCTAAGCAGCCCGTTT-----------
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>reverse_2921
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----------------------------------------GTTAGCTGCTTTATTGGACATTTCA---------------
--------------------------------------------------------------------------------
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---------------------------------
>forward_2813
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-------------------------------------------------------------------------TGTTCGA
AGCCTCATGCCTT-------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------
>reverse_4531
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--------------------------------------------------GTTGTTGTTGAGCTGCCCTG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
