>input_sequence_20586
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-----------------------------------------------------------------------ATGGCCGCA
GCGGTGGCTGACGCGGCGGTGCCGGCGGTGGCGAAGGCGAACGGCGCCGGGGCGGGGTGCTGCGCGGCGAAGGGCCCCGG
GTACGCCACGCCCAGGGAGGCCATGGAGAAGGGCCCGCGGGAGGGGCTCCTCTACGTCACCTGCGTCTACAATGGTACCA
ATCCTTCCTTCCGCCCGACCCTCCTCTTCCAAGTACCAAGTTCCAACACTGGAAAAAAGGCCACTCATACGCACGGCCAA
CGCACGCGCACACCGCTGACACCCGCACTGCGGTTGGCGCTTAGATCTCAGCGAGCAATTATGATTCCGTTACAGGTTCT
TATAATTAAAGTATAAGGACGTAGAGTAGTACAACAACAACAGCAGCAGAAGCAGGAGCTTGCACAGGCTTGACTTAACC
TGGACTGGACTGAGAATCCGAGATGGACATGCCACTTAATTTAATCCTGGAAGTCTCTTTCTAATGTACTCAGATTCCAT
A---------------------------------------------------TTACTCCTAATCGAGAAAGTGAGACTTC
CAGGATTAAAATCCTAGTAATATTTGAATCAAATGAGTAAACATATTAAATTCCTAATATGGGTGTCAGAGATGACTAAA
TGAGGACAAGAAGAATATTGGCATATGCTTTGCTATTCTAACTTCCTAATAATAAGCCTTGGTCCACGCAAAAAAGAAAA
GAGAGCCTTGGTTCAGATCTCCAATTACTCTGCATATGGCAGTTTCTTTTCGTCAGA----------------------G
ATGTGCAATTTTTCGTGCTATGGTGTAGACACTGGGCTGGAGTATTTTTAGCCCGTCCAACTTAATGTAATGGGTGTAAT
GTAGTGTCTAACCATATAGACCGGCTTTAATTCTGATATGTACTGCTACTACTGTACATATGCACGCAGCATGCATGTGC
CCTCCATGGCAGAAA--------CTGCCATTTGCTGTTACACAAGTGTCCAAGTTGGCTGAGTCGTGGATCATTCAGAAC
CGTCTAGTTCAGTCCCTGTCTGTTTCTGAGCTTCACATGGCCTGTCTTCATGGCAGTTTCTGAAGGCAGAACAAACCATG
TGAGCATGAGAAGAGATGTACGGGTGTGCCTTTGTACAGGTTGATTGCCTGATTGTGTGAAGTCTTGCTGATTGCCTGAT
TGAACTGAATTTTGCAGGTACTGGAATCAACAAGCCGGATTACCTGGCTACAGTGGACGTCGACCCCAATTCAGCGACCT
ACTCCCAGGTGATCCACAGGCT-CCCGGCCACCCACATCGGCGACGAGCTGCATCACTCCGGCTGGAACGCTTGCAGCTC
CTGCCATGGTGATCCATCCACGAGCCGGCGCTTCTTGATTCTCCCTTCGTTGCTGTGAGTA-----------------AT
CAGATGAATGAACGGTTGAATTTTAGCTCAGTTTTGAAATGCTGATCTGCTGGTTGTTCACAGGTCTGGTCGCGTGTATG
TGGTCGACACTGCAAAGGATCCGAGGGCGCCTGCTCTGCACAAGGTTGTCCAGGCTGAGGACATTGCTGAGAAGACCGGG
CTTGGGTTCCCTCACACATCCCATTGCCTTGCAACTGGGGATATCATGATTTCCTGCCTGGGAGACAAGGAGGGCAATGC
TGCTGGCAATGGCTTTCTCCTGTTGGATTCAGAGTTTAACGTCAAAGGGCGGTAAGTTTTTTGCCCACAATCTGGGTACC
ATTGACATGGAAACATAACATATGCTCAAAATGCATGCTGTAACATATTGTCACTTCATCATGAAACCATCTCA------
-GCATATCAGAATCATCCAACCACTCCATCCTGATTTACATATTACAAAATCTTCAGTAATATTTCAGCTTTGAAAAACT
TTAGTACTCCTATTATTGATGCCTTACTTTTCCGAAACAGACAGTTTTCAGTGGCTCCAACTGTACTGATTTAACTATTT
GCTACTTGTAGTTGGGAAAAGCCAGGTCACAGCCCCTTGTTTGGCTATGATTTCTGGTACCAGCCTCGTCACAAGACGAT
GATTAGCTCTTCATGGGGAGCTCCGGCAGCTTTCAGGACAGGTTTCGATCTCCAGCATGTCCAGGATGGTCTCTATGGAA
GGCACCTGCATGTGTATGACTGGCCTGGTGGTGAGCTCAAGCAGACACTGGATCTAGGCAGCACAGGTCTTCTTCCACTG
GAGGTGTGTATCAACTATCAAGTACCAAGAGTATAGGGGTCTAATAAT---------TATCCTATAACCATAGTTCTCTT
TTTATCTTCTCTGCAGGTGAG-GTTTTTACATGACCCATCAAAGGACACTGGCTATGTTGGCTGTGCTTTGACAAGCAAC
ATGGTGAGATTCTTCAAAACTGCAGATGGATCATGGAGCCATGAGGTTTGTCCGCAATGACA---TGCTAATGCCTACTT
CTTTCACACATAATGAAGTTTA---TTTTCATTTTATTTACA-CTTCT-TGTGCCTGTATTTGTAGGTAGCTATATCCAT
AGAGCCACTGAAGGTGCGCAACTGGATGCTGCCAGAAATGCCAGGATTGATAACTGACTTTGTCATCTCTCTCGATGACC
GTTATCTCTACTTGGTCAACTGGCTTCATGGGGATATCAGGCAGTACAACATTGAGGACCCTGCAAAGCCTGTGTTGGCT
GGGCAAGTATTTGTAGGTGGGCTTCTTCAAAAGGGCAGTGATGTTGTCTATGTGACCGACGATGACAAAGAAGAGCAGTA
TGCTGTGCCCCAAGTCAAGGTAAACTCTACAGTACTCCTCTTAAATCTTAATGGCTTGGTA------CATAAGTTACATT
CTTCAGAATATCTTCTGTATCTTTTATTAAAAAATAACCAGAG-TTACAATTCAATACTGGTTATATATAGTTCAACTGA
TGGGTGATTCAAGTACCAACTGGAACACATCCAGCTTGCAATGCTGCTATACTTATT-CTCAACTAAACCGAATGATCCA
ATGAAACTGCAATATTTGGAACATACTCCTTCCGTCCCAAAATTCTTGTCTTAGATTTTTCTAAATAGGGATGTATCAAC
TCACGTTTTAGTATTAGATACATCCATATCTAGACAAATCTAAGACAAGAATTTTGGGACGGAGGGAGTATTTATTTCTA
GTCACTCAACATTACTCTGACATACCATGTGTCTTGTATTCAGGGGCACCGGCTTAGAGGTGGGCCGCAGATGATTCAGC
TGAGCTTGGATGGCAAGAGGGTCTATGTAACCAACTCTCTCTTCAGCCGATGGGACGAGCAGTTCTATGGCCCTGACCTT
CTCAAGAAGGGATCTCACATGTTGCAGATCGACGTCGACACCGAGGAAGGAGGGCTGACTGTCAACCCCGACTTCTTTGT
GGATTTTGGCACCGAGCCTGAAGGTCCCTCATTGGCCCATGAAATGAGATATCCTGGGGGAGACTGCACCTCTGACATAT
GGATCTAG------------------------------------------------------------------------
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-----------------------------------------------------
>chr3A_1_TraesCS3A01G422100
GTAATTTAAAACGGAAGGAGTACATATGTTATGTTCGATTTGTTTAGATACAAATATAACTTGGGATGGAGGGAGTATAG
ATTAATATTAAAGAGTACCCTCTCCGTTTGAAAATGTTTGTTCCTCAAATGGATGTATCTAGCACTCCATTCATTTGAGG
AACAAGTTTGGGACAAGTTTTTTCGGACGGAGAGAGTACATTAGTATTTTCTTCGTCTCAAAAAGCTCGTTTTTGATCTG
T-CAGATACGGATGTGTCTAGACACATTTTAGTGTTAGATACATCCATATTTAGATAAATACTTCCTTCGCGAAGAAATA
TAAGAACGTTACGAGTAGTATTACGAAATAAAGTGCCAATTTCGTGCTCGAAAAAATGCAAAGCTGCAGCGTCCGTTGCA
CACGCAGACACACACACCCACACAGGA--------CGGCCCGTGG-------------------------------CGCA
CGCAGGCTCCGGCCAAGACGGGCGGCTCACGGCTGCGACCGCGAGGCCCCGGATCGGGACGCGCCGAGCCACCGCCACGA
ACCGCTCGCTGCGTCGCCATCGAC------------GGTCCAAGCTTTCTCCAACCCCAGTTCGTGGACGGATCGATCCC
GCCCGCCACGCAGGCACCCGCATTATC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GTCCAG
ATACGACGACGCCCTGCCCACGCCCCGGGCCCAGGTTCACTCGCCACGCCTCCGGCCTCCCTTCCCTCCTATAGCCATCC
GCACGCATCGCGAGGCGCGTCCCGCGGCATCCCCTCCGCCCACGTGGCGGCAGCCAAAGTTAGCCTCCCCTCTATAATTA
CCCCCGTCTCCCGGGCGGGCAGTCCCACCACCATCTCTCTCCTCTCCTCTGCTCCCTTCCTCTGTCCCTCTCGCACAGCA
GAAGAGAA------------CTCCTACCCTCCGGTGAGTCAGCACTGAGCTCGGCTCCCTGCTCCGTCAGCTGCTCTCCG
GCGGCTGGCACCGGGAGCGGCGTTTTCCTTCAGGCAGGGGGTTAACTAATTTGGGCGTCCTGAGATCACAGATGGCCGCA
GCGGTGGCTGACGCGGCGGTGCCGGCGGTGGCGAAGGCGAACGGCGCCGGGGCGGGGTGCTGCGCGGCGAAGGGCCCCGG
GTACGCCACGCCCAGGGAGGCCATGGAGAAGGGCCCGCGGGAGGGGCTCCTCTACGTCACCTGCGTCTACAATGGTACCA
ATCCTTCCTTCCGCCCGACCCTCCTCTTCCAAGTACCAAGTTCCAACACTGGAAAAAAGGCCACTCATACGCACGGCCAA
CGCACGCGCACACCGCTGACACCCGCACTGCGGTTGGCGCTTAGATCTCAGCGAGCAATTATGATTCCGTTACAGGTTCT
TATAATTAAAGTATAAGGACGTAGAGTAGTACAACAACAACAGCAGCAGAAGCAGGAGCTTGCACAGGCTTGACTTAACC
TGGACTGGACTGAGAATCCGAGATGGACATGCCACTTAATTTAATCCTGGAAGTCTCTTTCTAATGTACTCAGATTCCAT
A---------------------------------------------------TTACTCCTAATCGAGAAAGTGAGACTTC
CAGGATTAAAATCCTAGTAATATTTGAATCAAATGAGTAAACATATTAAATTCCTAATATGGGTGTCAGAGATGACTAAA
TGAGGACAAGAAGAATATTGGCATATGCTTTGCTATTCTAACTTCCTAATAATAAGCCTTGGTCCACGCAAAAAAGAAAA
GAGAGCCTTGGTTCAGATCTCCAATTACTCTGCATATGGCAGTTTCTTTTCGTCAGA----------------------G
ATGTGCAATTTTTCGTGCTATGGTGTAGACACTGGGCTGGAGTATTTTTAGCCCGTCCAACTTAATGTAATGGGTGTAAT
GTAGTGTCTAACCATATAGACCGGCTTTAATTCTGATATGTACTGCTACTACTGTACATATGCACGCAGCATGCATGTGC
CCTCCATGGCAGAAA--------CTGCCATTTGCTGTTACACAAGTGTCCAAGTTGGCTGAGTCGTGGATCATTCAGAAC
CGTCTAGTTCAGTCCCTGTCTGTTTCTGAGCTTCACATGGCCTGTCTTCATGGCAGTTTCTGAAGGCAGAACAAACCATG
TGAGCATGAGAAGAGATGTACGGGTGTGCCTTTGTACAGGTTGATTGCCTGATTGTGTGAAGTCTTGCTGATTGCCTGAT
TGAACTGAATTTTGCAGGTACTGGAATCAACAAGCCGGATTACCTGGCTACAGTGGACGTCGACCCCAATTCAGCGACCT
ACTCCCAGGTGATCCACAGGCT-CCCGGCCACCCACATCGGCGACGAGCTGCATCACTCCGGCTGGAACGCTTGCAGCTC
CTGCCATGGTGATCCATCCACGAGCCGGCGCTTCTTGATTCTCCCTTCGTTGCTGTGAGTA-----------------AT
CAGATGAATGAACGGTTGAATTTTAGCTCAGTTTTGAAATGCTGATCTGCTGGTTGTTCACAGGTCTGGTCGCGTGTATG
TGGTCGACACTGCAAAGGATCCGAGGGCGCCTGCTCTGCACAAGGTTGTCCAGGCTGAGGACATTGCTGAGAAGACCGGG
CTTGGGTTCCCTCACACATCCCATTGCCTTGCAACTGGGGATATCATGATTTCCTGCCTGGGAGACAAGGAGGGCAATGC
TGCTGGCAATGGCTTTCTCCTGTTGGATTCAGAGTTTAACGTCAAAGGGCGGTAAGTTTTTTGCCCACAATCTGGGTACC
ATTGACATGGAAACATAACATATGCTCAAAATGCATGCTGTAACATATTGTCACTTCATCATGAAACCATCTCA------
-GCATATCAGAATCATCCAACCACTCCATCCTGATTTACATATTACAAAATCTTCAGTAATATTTCAGCTTTGAAAAACT
TTAGTACTCCTATTATTGATGCCTTACTTTTCCGAAACAGACAGTTTTCAGTGGCTCCAACTGTACTGATTTAACTATTT
GCTACTTGTAGTTGGGAAAAGCCAGGTCACAGCCCCTTGTTTGGCTATGATTTCTGGTACCAGCCTCGTCACAAGACGAT
GATTAGCTCTTCATGGGGAGCTCCGGCAGCTTTCAGGACAGGTTTCGATCTCCAGCATGTCCAGGATGGTCTCTATGGAA
GGCACCTGCATGTGTATGACTGGCCTGGTGGTGAGCTCAAGCAGACACTGGATCTAGGCAGCACAGGTCTTCTTCCACTG
GAGGTGTGTATCAACTATCAAGTACCAAGAGTATAGGGGTCTAATAAT---------TATCCTATAACCATAGTTCTCTT
TTTATCTTCTCTGCAGGTGAG-GTTTTTACATGACCCATCAAAGGACACTGGCTATGTTGGCTGTGCTTTGACAAGCAAC
ATGGTGAGATTCTTCAAAACTGCAGATGGATCATGGAGCCATGAGGTTTGTCCGCAATGACA---TGCTAATGCCTACTT
CTTTCACACATAATGAAGTTTA---TTTTCATTTTATTTACA-CTTCT-TGTGCCTGTATTTGTAGGTAGCTATATCCAT
AGAGCCACTGAAGGTGCGCAACTGGATGCTGCCAGAAATGCCAGGATTGATAACTGACTTTGTCATCTCTCTCGATGACC
GTTATCTCTACTTGGTCAACTGGCTTCATGGGGATATCAGGCAGTACAACATTGAGGACCCTGCAAAGCCTGTGTTGGCT
GGGCAAGTATTTGTAGGTGGGCTTCTTCAAAAGGGCAGTGATGTTGTCTATGTGACCGACGATGACAAAGAAGAGCAGTA
TGCTGTGCCCCAAGTCAAGGTAAACTCTACAGTACTCCTCTTAAATCTTAATGGCTTGGTA------CATAAGTTACATT
CTTCAGAATATCTTCTGTATCTTTTATTAAAAAATAACCAGAG-TTACAATTCAATACTGGTTATATATAGTTCAACTGA
TGGGTGATTCAAGTACCAACTGGAACACATCCAGCTTGCAATGCTGCTATACTTATT-CTCAACTAAACCGAATGATCCA
ATGAAACTGCAATATTTGGAACATACTCCTTCCGTCCCAAAATTCTTGTCTTAGATTTTTCTAAATAGGGATGTATCAAC
TCACGTTTTAGTATTAGATACATCCATATCTAGACAAATCTAAGACAAGAATTTTGGGACGGAGGGAGTATTTATTTCTA
GTCACTCAACATTACTCTGACATACCATGTGTCTTGTATTCAGGGGCACCGGCTTAGAGGTGGGCCGCAGATGATTCAGC
TGAGCTTGGATGGCAAGAGGGTCTATGTAACCAACTCTCTCTTCAGCCGATGGGACGAGCAGTTCTATGGCCCTGACCTT
CTCAAGAAGGGATCTCACATGTTGCAGATCGACGTCGACACCGAGGAAGGAGGGCTGACTGTCAACCCCGACTTCTTTGT
GGATTTTGGCACCGAGCCTGAAGGTCCCTCATTGGCCCATGAAATGAGATATCCTGGGGGAGACTGCACCTCTGACATAT
GGATCTAGGACGAAGGGTGTAGGGTGCATATGCAGCTGGAGATCCATGGTGTTAAGCTCACTGTAATTAAGATGGTTTCT
TCCCTGCCTGCGGTGTTGTATGTGATGTGGTATCAATTGGAATAAGTTCCTGATAGAACCTCTGACATTGGCTTCATGGG
AGCTTGT-GCCCTAATAAGAGTTGCCTCTGATTCTGAAATTTCTGATGCTTTTGTAGGCC---TTATATCTTCTGCTTGA
AATGTTCTAAACGAGAATGATTAAGCTGGAAGCAAAGTAACACATGCAATAGCCATATACAGTATTAACCAGAGATATAA
TGCTATTTCACCAAAATCAAATAGTATTTCTTGCAACCAACAGCATGCATGGTCTTGTAACCAAAATTATGTATGTCAGT
TGATTGCTCTGCACCCGAC-GTACTGCCTCAGGGTAGTCGGGGTGGATCTCCTTGTAGTTCGAAGGTATTAGCTTACTAG
TGCCTGTTTGGTCAGCTGGCAATCTTCTTCCCAACTGGAGTACATGTGGGAGGGAATGATGGTGCATTAGCTTACATTAC
ACAAGCATTTAAACTCTGTACATACAGATTAGATAGTACTCCTATCAAACAAATTTAACTGGCAGAAGCTTACCCTTACA
AATCGCCTTCCATTTGGTTCACCGACAAGATATATCACCCGAGTGTCGATGAGATGTAAGCTTTTGTGGGAAGCACTATC
CAGTTTCGTTATCCGTCGATTTCTTCAGGTCTGGTTCCATCAGCGAGATCCGTAGGCCAGTGTTTGGTAATCAGTCATCA
AAACTACTCCCTCCGTTCCGCAATACATGACTTCCATTTATCAAAATATAGATGTACTAGACATGTTTTAGTTAACACCT
CAGGGAATTAAATCTTATCTGCATTTCCAACTGAATCCACAAACCACAATATCGCGATTGGGAAGAGTACAACGATTGCA
TTTTATTCTTGCGTTGCTAAGATGTACTCCCTCCGTAAAGAAATACTATAAGA
>chr3D_202
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TAGTACTCTCTTCGTCTCAAAAAGCTTGTCTTTGATTTG
TCCAGATACAGATGTGTCTGGACACGTTTTAGTGTTAGATACATCCGTATCTAGATAAATACTTCATTCGTAAAGAAATA
TAAGAACGTTACGAGTAGTATTACGAATTAAAGTGCCAATTTCGTGCTACGAAAAATGCAAAGCTGCAGGGTCCGTTGCA
CACGCAGACAC--------ACACGGGA--------CGGTCCGTTTGGCGTGAGCCCGTGGCGTGCGTGCGCACCTACGCA
CGCAGGCTCCGGCCAAGACGGACGGCTCACGGCTGCGACCGCGAGGCCCCGGATCGGGACGCGCCGAGCTTTCTCCCCGT
ACGTA-------------------------------GGTCCAAGCTGTCTCCAACCCCAGTTCCTGGACGGATCAATCCC
GCCCGCCACGCAGGCAGCCGCATTATC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GTCCAG
ATACGACGCCGCCTTGCCCACGCCCCGGGCCCAGGTTCACTTGCCACGCCTCCGGCCTCCCTTCCC-CCTATAGCCA-CC
GCACGCATCGCGAGGCGCGTCTCGCGGCATCCCCTCCGCCCACGTGGCGGTCCTC---GTTAGCCACCCCTCTATATTTA
CCCCCGTCTCCCA-GCGGGCAGTCCCACCACCACCATCTCTGTTCTC----------TCCTCTGTCCCTCTCGCACAACA
GAAGAAAAACCAACTACCTCCTCCTACGCTCCGGTGAGTC-------AGCTCGGCTCTCTGCTCCGTCAGCTGCTCTCCG
GCGGCTCGCCCGGGGAGCCGCGTTCTCCTTCCGGCAGGGGGTTAACTAATTTGGGCTTCCTGACATCACAGATGGCCGCA
GCGGTGGCTGACGCGGCGGTGCCGGCGGCGGCGAGGGCGAACGGCGCCGGGGCGGGGTGCTGCGCGGCGAAGGGGCCCGG
CTACGCCACGCCGAGGGAGGCCATGGAGAAGGGCCCGCGGGAGGGGCTCCTCTACGTCACCTGCGTCTACAATGGTACGC
ATGCTACCCTGCATAAATCCCTACTACTGTCGAATTCTAACACAGAAACACACCTGACACACCTC---------------
---------------------CCTGCGTTGCGAGTTGCGCATAGATCTCGGGCGAGTGGTTAGGAGCCCTACTAATTTAG
AGGCTTTAACAGAGCAAGTACAGGAAGAGCTCGA-------------------------------------GACTTGACC
TGGACTGCGATGGACAGACC-----GACAGGCCACTTAGTTTAACCCTGAAAGTCTCTTTCTAATACTACGAGGAAAGGG
ACGAACCGT-----------------------------------------------TCCTAATTTAGTCTGAAATGATGA
TAGGAAAGAATAC----TAAAGACA-------------------------------------------------------
------------------------------TGCTACTCTAAGTTTCTAGTAATAGTAAA---------------------
-----CCTTGGTTCAGAAACTTCAGATCTGCAATCATCTCGCAGTCCCTCAGTTTAATACTATATATTTTTCCCTCCGGG
ATATGCAATTTTTCTTGAGTTGGTGAAGACACTGGGGTATGCCTCGAGTTAATTAGCCTGAGCTTAAGGGAAAATGTTTA
GCCTGCGAGCTTAACATACAT--------------------------------------------GCAGCATGCATGTGC
CCTCCATGGCAGAAAGCCAGAAACTGCCATTTTCTGTTACACAAGAGTCCAAGTTGGCTGAGTCGTGGATCATTCAGAAC
CGTCTAGTTCAGTCCCTGTCTTTT-------TTCACATGGCCTCTCTTCATGGCAGTTTCTGAAGGCAGAACAAACCATG
TGAACATGACAAGAGATGTACGGGTGTGCCTTTGTACAGGTTGATTGCCTGATTGTGTGAACTTTTGCTGATTGCCTGAT
TGTACTGAATTTTGCAGGTACTGGAATCGACAAGCCGGATTACCTGGCCACGGTGGACGTCGACCCCAATTCTGCGACCT
ACTCCCAGGTGATCCACAGGCT-CCCGGCGACGCACATCGGCGACGAGCTGCATCACTCCGGCTGGAACGCCTGCAGCTC
CTGCCACGGCGATCCGTCCACGAGCCGGCGCTTCTTGATTCTTCCTTCCTTGCTGTGAGTATTTATGGAGCGACAACGAT
CAAATGGGCGAACAGTTGAATTTTAGCTGAGTC-TGTAATGCTGCTTTGGTGGCTGTTCACAGGTCTGGTCGCGTGTATG
TGGTCGACACTGCGAAGGATCCGAGGGCGCCTGCTCTGCACACGGTTGTCCAGGCTGAGGACATTGCTGAGAAGACCGGG
CTTGGGTTCCCTCACACATCCCATTGCCTTGCAACTGGTGATATAATGATTTCCTGCCTGGGAGACAAGGAGGGAAATGC
TGCTGGCAATGGCTTTCTCCTATTGGATTCAGAGTTTAACGTCAAAGGACGGTAAGCTTAAAA-----------------
------------------------------------ACCGTAACATATTATTACTTTACCATGTAAATATCTCATGCTGA
TGCATATCGGAATCATCAAACCACCCAT-----------------------------TAATATTTGAGTTTTGAAAA-CG
TCGA---------TATTGATGCTTTACTTTTGAGAGACAGA--GTTTTTATCTGCTCCTGTTGTATTGA-TTAACTATTT
GCTACTTGTAGTTGGGAAAAGCCAGGCCACAGCCCCTTGTTTGGCTATGATTTCTGGTACCAGCCTCGTCACAAGACGAT
GATTAGTTCTTCATGGGGAGCCCCGGCAGCTTTCAGGACAGGTTTTGATCTCCAGCATGTCCAGGATGGTCTCTATGGAA
GGCACCTGCATGTGTATGACTGGCCTGGTGGTGAGCTCAAGCAGACGCTGGATCTAGGCAGCACAGGTCTTCTTCCGCTG
GAGGTGTGTATCAGATACTATACTT-----------GAGTCCAGTAATTCACCCATACATCATATAACCATAGTTCTCCT
TTTCTCGTATCTGCAGGTGAG-GTTTTTACACGACCCATCAAAGGACACCGGCTATGTTGGCTGTGCTTTGACAAGCAAC
ATGGTGAGATTCTTCAAAACTGCAGATGGATCATGGAGCCATGAGGTTTGTTCACAACTACAACGTGCTAATGCCTACTT
CTTTCGTACATAATGAAGTTTA---TTTTCTATCTTATATACGCTTCC-TATGTCTGTATTTGTAGGTAGCTATATCCAT
AGAACCATTGAAGGTGCGCAACTGGATGCTGCCAGAAATGCCAGGATTGATAACTGACTTTGTCATCTCTCTCGATGACC
GCTATCTCTACTTGGTCAACTGGCTTCATGGGGATATCAGGCAGTACAACATTGAGGACCCTGCAAAGCCTGTGTTGGCT
GGACAAGTGTTTGTAGGTGGGCTTCTTCAAAAGGGCAGTGATGTTGTCTATGTGACCGACGATGACAAAGAAGAGCAGTA
TGCTGTGCCCCAAGTCAAGGTAAACTCTACAGTACTCCTCTTAAATCTTAATTGCTTCGTA------CATAAGTTACATT
CTTCAGAATATCTTGTGTATCTTTTATAC-AAAATAACCAGATTTTACAATTCAATACTGGTTTCATATAGTTCAACTGA
TGAGTGATTCAAGTACCTACTGGAATACATCCGGCTTGCAATACTGCTATATTTG-TTCTCAACTAAACCGAATGATCCA
ATGAAACTGCAATATTTGGAACATAG------------------------------------------------------
-----------------------------------------------------------------------TTATTTCTA
GTCACTCAACATTACTCTGACATACCATGTGTCTTGTATTCAGGGGAATCGGCTTAGAGGTGGGCCGCAGATGATTCAGC
TGAGCTTGGACGGCAAGAGGGTGTATGTGACCAACTCTCTCTTCAGCCGGTGGGACGAGCAGTTCTACGGCCCTGACCTT
CTCAAGAAGGGATCTCACATGTTGCAGATCGACGTCGACACTGAGGAAGGAGGGCTGGCTGTCAACCCCAACTTCTTTGT
TGATTTCGGGACCGAGCCTGAAGGTCCCTCCTTGGCCCATGAGATGAGATATCCTGGTGGAGACTGCACCTCTGACATAT
GGATCTAGGAGGAAGGGTGTAGGACACAG--GCAGCTGGAGATCCATGGTGTTGAGCTCACTGTAATTAAGATGGTTTCT
TCACTGCCTGCGGTGTTGTATGTGATGTGGTATCAATTGGAATAAGTTCCTGATAGAACCTCTGACATTGGCATCATGGG
AGCTTGT-GCCGTAATAAGAGTTGCCTCTGATTCTGAATTTTCTGATGCTGTTGAAGGCCTTGTTATATCTTCTGCTTGA
AATTTTCTAATCAAGAATGATTGAACTGGAAGCAAAGTAACACATGCAATTGCCCTATA-----TTAACCAGAGATATAA
TGCTATTTCACCAAAATCAAATAGTGTTTCTTGCAACCAACAGCATGCATGATCTTGTAACCAAAATTACATATGTTAGT
TGATTGCTCGTGGGTTTGATGTACTGCCTCGGGGTAGTCGGGCTGGATCTCCTTGTAGTTCCATGG---TAGCTTACTAG
TGCCTGTTTGGTCAGCTGTCAATCTTCCTCCCAACTGGAGTACTACTGGAAGGTAATAAAGGTGCATGAGCTTACATTGT
ACAAGCACTTAAACTCTGTACATACAGGTTAGGTATTATTG------AACAAATTTAACTGACAGAAGCTTAACCTTACA
ATCACTG-TCCATTTGGTTCACCGACAAGATATATTACCCGAGTGTCGATGAGATGTAAGCTTTTGTGGGAAGTACTATC
AGGTTTCGTTATCCGTCGATTTCTTCAGGTCCGGTTAAATCAGCGAGATCCGTAGGCCAGTGTTTGATAATCAGTC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>chr3B_333
AGTATT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TTACGAATTAAAGTGCCAATTTCCTGCTACGAAAAATGCAAAGCTGCAGCGTCCGTTGCA
CACGCAGACAC--------ACACGGGATGACGGGACGGTCCGTTTGGCGTGAGCCGGTGGCGTGCGTGCGCGCCTACGTA
CGCGCTCA--GGCCAAGACGGACGGCTCACGGCTGCGACCGCGAGGCCGCGGACGGAGACGCGCCGAGCCACCGCCACGG
ACCGCTCGCTGCGTCGCCATCCATCCACCGTGCCAGGGTCCAAGCTTTCTCCAACCCCAGTTCGTGGACGGATCGATCCC
GCCCGCCACGCAGGCAGCCGCATTAGGGCATCTTCAATAGGTTGTATGTTAGTCCTGTTCGTAAAATGTTCATGTCATCA
ACCAATAAGTTATCATACAACCATCCCAATGGGTTGTATGTAAACTATCCAATCGATGATGAGAAAATAAATGTGATTTC
TTTCTATTTCACCTTGAAGCTTGTGCAAAAGTTGTTGGTTAATCTACATACAACTTTGCTCTCTCTCCACATTCAATGCA
TGCCACATCATCACTATGTCCTAGATGATAAATTTATCAACACCTATCTTACAACTGTTGGAGATGCCCTTATAGTCCAG
ATACGACGACGCCTTGCCCACGCCCCGGGCCCAGGTTCACTCGCCACGCCTCCCT------TTTCC-CCTATAGCCACCC
GCACGCATCGCGAGGCGCGTCTCGCGGCATCCCCTCCGCGCACGTGGCGGCCT---AAGTTAGCCTCCCCTCTATAATTA
CCCCCGTCTCCCGGGCGGGCAGTCCCACCACCACCGTATCTCTTCTC----------TCCTCTGTTCCTCTCGCACAACA
GAAGAAAAACCAACTACCTCCTCCTACGCTCCGGTGAGTCAGCACTGAGCTCGGCTCTCTCCTCCGTCAGCTGCTCTCCG
GCGGC-------------CGCGTTTTCCTACCGGCAGAGGGTTAATTATTTCGGGCGTCCTGAGATCGCAGATGGCCGCA
GCGGTGGTCGACGCAGCGGTGCCGGTGGCGGCGAAGGCGAACGGCGCCGGGGCGAGGTGCTGCGCGGCGAAGGGGCCCGG
GTACGCCACGCCCAGGGAGGCCATGGAGAAGGGCCCGCGGGAGGGGCTCCTCTACGTCACCTGCGTCTACAATGGTACTA
ATCCTTCCTTCCGCCCGACCCTCCTCTTCCAAGTTCCAAGTTCCAACCCCGGAAAAAAGGCTACTCATACGCACGGCCAA
CGCACGCGCACACCGCTGACACCCGCAGTGCGGTTTGCGCCTAGATCTCGGCGAGCAATTAGGATTCAGTTACAATTTTT
TATAATTAAGTATCGA-GACGTAGAGTAGTACAACAACAGCAGCAGCAA---CAGGAGCTTGCACGGGCTTAACTTAACC
AGGACTGGACTGAGAATCTGAGATGGACATGCCACTTAATTTAATCCTGGAAGTCTCTTTCTAATATACTCAGATTCCAT
ATTACTCAATTTAATCCTGGAAGTCTCTTTCTTAATATACTCAGATTCCATATTACTCCTAATTGAGAAAGCGAGACTTC
CAGGATTAAATCC----TAATATTTGAATCAAATGAGTAAACATATTAAATTCCTAACATGGGTGTCAAAAATGACTAAA
CGAGGACAGCAAGAATATTGGCATATGCTTTGCTATTCTAACTTCCTAATAATAAGCCTTGGTCCACGCTAAGA--AAAA
AAGAGCCTTGGCTCAGATCTCCAATTACTCCGCAATATGGCATCTTTTTTCGTCAGA----------------------G
ATGTGCAATTTTTCGTGCTTTGGTGTAGATACTGGGCTGGAGTATTTTTAGCCCGTCGAACTTAATGTAATGGG------
--------TAGCCATATAGACAGTC-TTAATTCTGATATGTACT---------GTACATATGCACGCAGCATGCATGTGC
CCTCCATGGCAGAG--------ACTGCCATTTGCTGTTACACAAGAGTCCAAGTAGGCTGTGTCGTGGATCATTCAGAAC
CGTCTAGTTCAGTCCCTGTCTGTCTCTGAGCTTCACATGGCCTCTCTTCATGGCAGTTTCTGAAGGCAGAACAAACCATG
TGAACATGAGAAGAGATGTGCCGGTGTGCCTTTGTACAGGTTGATTGCCTGATTGTGTGAAGTTTTGCTGATTGCCTGAT
TGTACTGAATTTTGCAGGTACTGGAATCGACAAGCCGGATTACCTGGCCACGGTGGACGTCGACCCAAATTCAGCGACCT
ACTCCCAGGTGATCCACAGGCT-CCAGGCGACCCACATCGGCGACGAGCTGCATCACTCTGGCTGGAACGCCTGCAGCTC
CTGCCACGGCGATCCATCCACGAGCCGGCGCTTCTTGATTCTTCCTTCGTTGCTGTGAGTATTTATGGAGCGACGGCGAT
CAAATGGATGAACGGTTGAATTTTAGCTGAGTC-TGTAATGCTGCTTTGGTGGCTGTTCACAGGTCTGGCCGTTTGTATG
TGGTCGACACTGCGAAGAATCCGAGGGCGCCTGCTCTGCACAAGGTTGTCCAGGCTGAGGACATTGCTGAGAAGACCGGG
CTTGGGTTCCCTCACACATCCCATTGCCTTGCAACCGGTGACATAATGATTTCTTGTCTGGGAGACAAGGAGGGAAATGC
TGCTGGCAATGGCTTTCTCTTGCTGGATTCAGAATTTAACGTCAAAGGACGGTAAGATTTTTGCCCACAATTTGGGTACC
AATGACTTGGAAACATAACATATT-TCAAAATGCATACTGTAGCATATTATCACTTCATCATGAAACCATCTCA------
-GCATATCAGAATCATCCAACCACCCCATGCTTATTTACATCTTACAAAATCTTCAGTAATATTTCAGCTTTGAAAAACT
TTAGTATTCCTATTATTGATGCCTTATTTTTCCGAAATAGACAGCTTTTAGTGGCTCCAACTGTACTGATTTAACTATTT
GCTACTTGTAGTTGGGAAAAGCCAGGTCACAGCCCCTTGTTTGGCTATGATTTCTGGTACCAGCCTCGTCACAAGACGAT
GATCAGCTCTTCATGGGGAGCCCCGGCAGCTTTCAGGACAGGTTTTGATCTCCAGCATGTCCAGGATGGTCTCTATGGAA
GGCACCTGCATGTGTATGACTGGCCTGGTGGTGAGCTCAAGCAGACACTGGATCTAGGGAGCACAGGTCTTCTTCCGCTG
GAGGTGTGTATCAACTATCAACTTATCAAG---TAGGAGTCTAATAATGCACCCATATATCATATAACCATAGTCCTCTT
CTTATCTTCTCTGCAGGTGAG-GTTTTTACATGATCCATCAAAGGACACTGGCTATGTTGGCTGTGCTTTAACAAGCAAC
ATGGTGAGATTCTTCAAAACTGCAGATGGATCATGGAGCCATGAGGTTTGTCCGCAACTACGTTCTAATAATGCCTACTT
CTTTTCTACATAGTGTGAAGTTCATTTTCCATCTTATTGACA-CTTCTATATGCCTGTATTTGTAGGTAGCTATATCCAT
AAAACCGTTGAAGGTGCGCAACTGGATACTGCCAGAAATGCCAGGATTGATAACTGACTTTGTCATCTCTCTCGATGACC
GTTATCTCTACTTGGTCAATTGGCTTCATGGGGATATCAGGCAGTACAACATTGAGGACCCTGCAAAGCCTGTGTTGGCT
GGACAAGTGTTTGTAGGTGGGCTTCTTCAAAAGGGCAGTGATGTTGTCTATGTGACCGACGATGACAAAGAAGAGCAGTA
TGCTGTGCCTGAAGTCAAGGTAAACTCTACAGTACTC---TTAAATCTTAATTGCTTCGTACTCCTACATAAGTTACATT
CTTCAGGATATCTTGTGTATCTTTTATACAAAAATAACCAGATTTTACAAGTCAATACTGGTTACATATAGTTCAACTGA
TGAGTGATTCAAGTACCTACTGGAACACATCCGGCTTGCAATGCTGCTATATTTG-T-CTCAACTAAACCGAATGATCCA
ATGAAACTGCAATATTTGGAACATAG------------------------------------------------------
-----------------------------------------------------------------------TTATTTCTA
GTCACTCAACATTACTCTGACATAACATCTGTCTTGTATTCAGGGGCATCGGCTTAGAGGTGGGCCGCAGATGATTCAGC
TGAGCTTGGATGGCAAGAGGGTGTATGTGACCAACTCTCTCTTCAGCCGGTGGGACGAGCAGTTCTACGGCCCTGACCTT
CTCAAGAAGGGATCTCACATGTTGCAGATCGACGTCGACACTGAGGAAGGAGGGCTGGCTGTCAACCCCAACTTCTTTGT
TGATTTCGGGACCGAGCCTGAAGGTCCCTCCTTGGCCCATGAGATGAGATATCCTGGTGGAGACTGCACCTCTGACATAT
GGATCTAGGAGGAAGGGTGTAGGACACAG--GCAGCTGGAGATCCATGGTGTTGAGCTCACTGTAATTAAAATGGTCTCT
TCCCCGCCTGCGGTGTTGTATGTGATGTGGTATCAATTGGAATAAGTTCCTGATAGAACCTCTGACATTGGCTTCATGGG
AGCTTTGGGCCCTAATAAGAGTTGCCTCTGATTCTGAAATTTCTGATGCTGTTGAAGGCCTTGTTATATCTTCTGCTTGA
AATTTTCTAATCGAGAATGATTGAGCTGGAAGCAAAGTAACGCATGCAATTGCCCTATA-----TTAATCAGAGATATAA
TGCTATTTCACCAAAATCAAATAGTCTTTCTTGCAACCAACAGCATGCATGATCTTGTAACCAAAATTACATATGTCAGT
TGATTGCTCTG---------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr4B_1976
--------------------------------------------------------------------------------
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-------TTCAATACCTATCTGTTTTTGAGCTTCACATGGCCTCTCTTCATGGTAGTCTCTAAAGGCAGAACAATCCATG
TGAACATGACAAGTGATGTAGGGTCTTGGTTTTGTACAAGCTTTAGTTAAGTGTTTATGT----------------TGAT
TGTGTGAAATTTTGCAGGTACTGGAATTGATAAGCCAGATTACCTGGCTACGGTGGACGTGGACCCCAATTCGGCGACCT
ACTCCCAGGTGATCCACAGCCCCCCCGGCCTCCCACATTGGCGACGAGCTGCATCACGCTGGCTGGAACACGTGCAGCTC
CTGCCATGGCGATCCATCCACGAGCCGGCGCTTCTTGATTATACCTTCATTGCTGTGAGTATATATGAAGCGATGATGAT
TAGACGAACGAACGGTTGAATTTTAGCTGAGTC-TATAATGCCGATCTGGTGGCGGCTCATAGGTTTGGTCGAGTGTATG
TGGTCGACACTACGAAGGATCCGAGGGCGCTTGCCCTGCACAAGGTTGTTCAGGACT--------------------GGG
CTTGGGTTCCCTCACACATCCCATTGCCTTGCAACTGGCGATATAATGATTTCCTATCTGGGAGACAAGGAGGGAAATGC
TGATGGCAATGGATTTCTCCTGTTAGATTCAAAGTTTAACGTCAAAGGGTGGCAAGTTTTTTGCCCACAATTTGGGTACC
ATTGACAAGGAAACATAACATATGCTCAAAATCTGTACCATAACATATTATCACTTCATCATGAAATCATCTCATTCTCA
A-CATATCAGAACCATCCAACCACCCCATGGTGATCTACACCTTACAAAATCTTCAGTAATATTTTAGCTTTGAAAA-CT
TTAGTACTCCTATTATTGATGCCTTAATTTTCTGAAACAGATAGTTTTTAGAGGCTCCAACTGTACTGATTTAACAATTT
GCTACTTGTAGTTGGGAAAAGCTAGGTCACAACCCCTTGTTTGGCTATGATTTCTAGTACCAGCCCCATCACAAGACGAT
GATTAGCTCTTCATGGGGAGCCCTGACAACTTTCATGACAAGTTTTGATCTTTAGCATGTCCAGGATGGTCTCTATGCAA
GGCACCTGCATGTGTATGACTGGCCTGGTGGTGAGCTCAAGCAGACACTGGATCTAGGCAGCACATGTCTTCTTTTGCTA
GAGGTGTGTATCAACTATCAAGTACCAAGAGTATACGAGTCTAATAATGCGCTCATATATCATATAAGCATAGTCCTCTT
CTTATCTTCTCCGCAGGTGAGAGTTTTTACATGACCCATGGAAGGACACTGGCTATGTTGGCTGTGCTTTAACAAGCAAC
ATGGTGAGATTCTTCAAAACTGCAGATGGATCATGG--------------------------------------------
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-----------------------------------------------------
>SNPs
SSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-S------------------S--S------S--
---------S---------S-----S--------------------S---S--------------S----SS--------
---------------------------S--------------------SSS-----------------------------
-----------SSSSSSSS----S--------------S----SS-----------------------------------
---------------------S---------------------------------------------------------S
---------------------S-S--------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S----------------------------------------------------S----------S--
---------------------S-----------------------------SSS-S------------------------
---------------------------------S-SSSSSS--SSS-SSSSSSSSSS--------------------S--
-----S---------------------S-----------------------------S----------------------
------S--S-S------S------------S------------------------------------------------
----------------------------S---------------------------------------------S-----
------------------------------------------------------------------------------S-
----------------------------------S--------------S------------------------------
---------------------------S-------S----S--------S-----------S------------SS--S-
---------SSS-SS-S----------------------S--------SSSS-------------S--------------
-----------------------------------------------------------------S--------------
---------------------------------------------------------------S-------S--------
----------SS-SSSS----------------------------------------S----------S-S---------
S-------SS-----------------------------------------------------------S--S-SS----
S-----------------------------S---S--S--SS-S------------------------------------
-------------------S---------------------------------------------------------SSS
-SSSSSSS--S----------S-S-S------------------SSSSSSSSS---------------------------
---------------------------------------------S----------------------------------
-------------------------------------------S------------------------------------
---S-----------------------------------------------------------S----------------
--S-------------------------S----------------------S----------------------------
-----------------------------------------------------------------------S--------
---------S--------------------------------S-------------------------------------
----------------------------S---SS--S------------S---S--------------------------
-------------S------------------------------------------------------------------
--------------------------------------S-----S-----------------------------S-----
-----------------------------------------------------------------------S--------
------------------------------------S------------S------------------------------
------------------------S----S-----------S--------------------------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
---------------------S-----------------------S----------------------------------
----------------------------------------------------------------------------S---
-------------------------------------S-----------------------S------------------
--------------------------------------------------------------------------------
---------------------------------------------------------SS---------------------
-----SS-------------------------------S-----------S-----------------------------
---S---S------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S-----S-----------------------------------------------------------------------
----------------------------------------------------S----S----------------------
--------------S------------SS-------------S---------------------S---------------
--S--------------S--------------S------------------S--SS------------------------
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
------------------------------------------------S-------------------------------
----------------------S-----S--------------------S-----------------S------------
-----------------------------------------S---------------S-----------S----------
S-----S--S--------------------S-----------S--------------S----------------------
----------S------------SSS--SSS----------------------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S---S-------------------------
---S------S-----------S---------------------------S---S----SSSSS----------------
-------------------------S-------------------------S-----------------SS---------
-----------SSSSSSSS-----------S-----------S------------------S-S--SSS-----------
------------------S--------S---------------SSS---S---S---S-S-------S----------SS
-------S-------------------S----S--S--S-SSSSSSS--------------S----------S-------
-SSSSSSS---------------------------S-------------------------------------S------
SS-----------------------------S----SS----------------------------S---------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_370
--------------------------------------------------------------------------------
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------------------------------AAGTGCCAATTTCGTGCTCG------------------------------
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>reverse_2366
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---------------------------------------------TGTCCAAGTTGGCTGAGTCG---------------
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>forward_2070
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--------------------------------------------------AATAAGCCTTGGTCCACGCA----------
--------------------------------------------------------------------------------
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>reverse_3486
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---------------------------------------------CGATCTCCAGCATGTCCAGG---------------
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>forward_2444
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------------------------TCTGAGCTTCACATGGCCTG------------------------------------
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>reverse_3928
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-------CTGAAGGTGCGCAACTGGAT-----------------------------------------------------
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>forward_3597
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---------------------------------------------------------GCAGCACAGGTCTTCTTCCA---
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>reverse_5298
--------------------------------------------------------------------------------
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-----------------ACGTACTGCCTCAGGGTAGT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
