>input_sequence_20438
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-----------------------------------------------------ATGGCCGCCGCGGTCGCCTTGGCAAGC
CCTCTCCGGCGGCTCCTCCACTTCCCTTGCCCGCGCCGCGCTATCCCCGCACCACTCCGCTTCTTCGCGCGAGGTAAGCC
CTAACCCATTGCCCGGTCGGCCTGATACTCCGATTGAGCTGTTTGTCTAATACTTGGTCGCCATGCGCAGGGCGGTGTGA
CGTGGCCCTCGCCGTCTCGGCGGCCGCAGTCGGAGATTCGTCTGCTAAGGGGGGCGTGCACAGGCATGTAATCGAGGAAG
TCATGGACATTCTGGATATGGTTATCTCTTTTTCTTCATTCTAGCACATTTGTATTTTCCATTGAGCTTCCGTCAGAGTC
TAGTTCGACGTGAAACAGTTATGTTTGAATGTTTCGCTTGCTGAGATTAGATGGCTGACGATAATGCGGATAGTCGGCTT
GTGGACGAGGTGTTTGATTAACTGCCTCAATGGAATTTGAGGTTTCTTTCCACAATTTAAGAAAGTATCATGAGCTTCAG
GTTGTGTTCCAGTAGGCTCATAGACTTCCTCTCTAAGAGGGTATGTTACATGAAAAATTAGGGGAAAATTAGATGTGTTT
ACTGAGATTAGATGGTTGATGATAGTG-CGGATACTTGGCCTATCGAGGAACTGTGCCTCGATGGAATTTGAGACTTCTT
CCCACTATTCATGAGCTTTAGGTTGTGTTCTAATAGGCTGATGCTTCCTCTCTAAGAGAATATTTTTAGTACATGAAACT
TAGGGGAAATGAGATGTGCTTCCTGTTAGCTGTTTTGCTATTGAAGCATGAAGAAAAAGTCGATGAATTGTCCATTTGGT
GTGTGAAAACATAACCTTTCAATCATATTGGCTTTGGTGCCTTTGTAAGAAGAGAATAAAATTGCTTCTTCCAAGGTAAA
CCAAGTGGCAGGAGTTAAAGAATTG---GTGAATAGATGTACGGATAAGCTGTAGGGAGGAAATACAAACTTGATCCTGA
TACCCTATAGTGTCACATGATGCTTGA---AACATAACATAACATAACTGCCTTTTTGCATATTAACAATGTACCATGAG
GTTACTACATGGTTTTTCAGTAAATTTGTTCCAATACTGTAGTTATTCCATTTCCAAGAGAAGGGATATCACCCTGTTTT
ATATTGAGAAAATTACTGGGGTTAC-AGTTACATGATCATTAGTTCTTCAGTTCATGAATTTGTACTGACATCAAGCTTA
TGCAGGCACAAAGGGCTTCCCAACGAAGAGATGTCTTCCACACCAGTTTTCTTACGCCACCTATCATAGCGGAGGCTATG
CTAGCAATTGAAAAGTTAGCTGATATCAAAGCAGTAGCTCAGGGGGGCTATCCACAGGTGGAATTCAATACAATCAAAGG
AGTTGTTGATAGCTACCATTTTTACGTGAATAATAGCTTATATTAACCTATATACCTTGTTTTTCTCATCTTCATATCCA
TTTAGGCTGAGCGGTGCCGAATTTCAGCTGGGCATCCAGACTCTATGAGAAGTGACCCAGATGTAGTTGCTGCTTTGAGG
TTTTCAAGAATTTATAT--TGTAGCCATCACTATCTGTTATGTAAACTGACTTTTAAACCTTTCCTAGCATCTCCGGGAA
TTTCCGATTGGAACCCTGTTCTCATGGTGACTTTCTCGGTGCTATTCTTGGGGCAGGAATTACAAGGGAGAAAGTTGGAG
ATATACTTTTACAGGTCCACACTTTCCACAAATACTCATTTCCCTGAGGCG-TGTCCAGTTTTTCTTTTCCCATCTTATC
ATCATTTGGGTTGTCTCTTTGCTTTTCTGTTAGGGGGAAAGAGGTGCTCAGGTCCTTGTTGATCCAGAGCTTGTTGACTA
TCTGACTTCCACACTAGAAAAGGTAGGTATCTCACAAATTATGTTGCCAATTTTTCGTTTGTGCGAGCTGGATGTGCATG
CTCCCACTTATGTGCCTATGTTTATATAATGGATCAGATCTGAGATATGGTTCAG-------TGACATGCATTCAATGCT
ATGCAAAGCACATAACCTGTATATTACATGCTGATGTGTTTGTTTTTACTCGACATTTTAAGAAATTAGAGCACATTGCG
ATCCTAATTTTTATGTCCGCTTAGATCGCTGAAAATCTTTGTTCTTTTTATGTTAGTCTTTTGTATTTGTGAGTTTTGAC
ACAAATTTGTCCGCGAAGAATCTCCCCATGAACTTTGACTGTTGTTCATGATTTTTTT-AGTATCATTTTCCTTGTTGGA
AGTGCAGATTCTTCTAATTATGGTTTACTCTGAATGATATTTTATTGAACAGGTGGGGAAAGTTGGTGTTTCATGCACCC
AGATTCCCTTGCTTGCTATAGAGTATGAGCCACCAAGGTTTGTTTCACATGTCATCGTGGATCTTAGTGTATATACTGCA
TGCTTAAGATCACAACAACTTATGATGTAATACCCTGGAATAAGCTACTCAGCACTGCCATTGAACTGCAGGACCAAATC
TTTTAAAACTGTAGAATCATCACTTCGGGTTGATGCTGTGGCCAGTGCAGGATTTAAAATATCACGCACAAAGCTTGGTA
GCATGATCAGGTATGAACTTTGAGCTGCTAATTTGTTACTTTATGTTCAGTAAGGCTTTTCTTTACCTTACCATGAATAG
TTGGACATTCTTATCTTATTTTGGACGGTGCTGTTAGCCTGTTGGTTTTTCTAATTACCATGCACAATGCAATTCATTGT
AAGTTTCCTTTTCTGTTTGGTAAGTTCTGGAGATGTTCGTGTGAATTGGTCACTGGTTTCGAAAAGTGGAGCTACCCTCA
AGGCTGGGGATGTTGTTTCTGTCAGTGGGATGGGGAGATTAAAGGTAAAATCAATCACCAGTTATTGTCTTTTTGAATAA
ATGTTTGATGAGCCTTGAATTCTCTTGAGCAAATTAGGATAAAATTATGATGTTACTGTTGCACCTAGTTTACGCTGATG
GAACAATTTTTCTGGTGCTTCAGAGGCATTCCACCAGTGCAGGTTTTTGAGAATATGTTGGGCCTTGCATTGTATTCTGT
ATGCAGTTAAGTTGGACCG--CCCATTCTATATGTTTAGTGTTTGTTGTTTTTTTAATCCTTTCCTTCTTTATTCTGTGA
ACCATACTCCAAAATGTTAAATGGAAAAATTACAACCTTTCGCTGTCCACTTATATTCATAATATGTTTGTTGATATATG
CTGACAAT------TAGATCTTTGCATTATATGATATGCAGAAATACCCATTATAGCATGCTATGGAAGATGTATGCATG
CTACTAGAGATGTCTAATACATTTTCAAATCTCTGTTATATGCTTGAGTTACTTCAAGTCATTATTTCCTGTAGATTGGG
GAAATCGTGACTACGAAGAAAGGCAAATATGTCATTCAGTTGATTCAATATTTGTAG-----------------------
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>chr3D_1_TraesCS3D01G273000
ATTTCCTCGAACAGCTCCCGGGCGTTGTTGGTGCGGCCCTGCGCGCTCAGCCCGCGCAGCAGGTAGCTGTACGTGAGGCC
GTCCGGCTCGCAGCCGTAGACGGGCGCCATCTGGTGGAACACGCGCAGCGCGTCGTTGAGGTGCAGCGACTGCGCGTAGC
CCCTGACGAGCACGTTGAGCGCCCGGGTGTCCGGCGGGATGCCCTCCTCCAGCATCTGCCGGAACAGCGCGGAGACGGTG
TCCATGTACATGTAGTGCACCATGGAGTCGTTGCCCCCGCGCGACAGCAGCGCGGTGAAGAGCGCGTGGTAGGTGTCGGC
GGCGGGGCGCGCGGCCGGGTCGGCGGAGGCGCGCATGAGGGTGTAGACGTGGAACGCCTTGCCGAGCTTGCGGAACTCGC
AGTAGAAGTAGAGGGCGGCCCTGAGGAGGGGCCCCGGGGACGGGAGCGAGGGGAGGAGGGAGAAGAAGAGGGCGCAGGTG
CGGTCGAACTCGTCGTAGAGCTGGGCGGCGCCCAGGCGCTTGACGGCGACGAGGAAGGGCCCCGGGTCGGGCCGGAAGGT
GGGCCGGCCGAGGGAGTGGGTGAGCAGCGGGAAGAGGAGGCGGAGGTCGGAGGTGGAGGCGAGGGAGGATGCGAGGACGG
CCGGTGTGAGGCGGGAGGGGAGGGAGGCGATGGCAGCGGAGACGGCGTCGGGAGACGGCGACTGGCTGGGCGCGCGGTGG
CTGCGGCGGAAGCGGTGCGGGGTGCGGCGGGAGGAGGTGGCGAAGGGGAGGCGGTGGGAGAGGGAGGCGCCGGCGGGCGT
GCTGCAGAGGATGCGGCGGAGGAGCGTGCTCATCGCGGCGGCGGCGGCGG---GGATACTGCGACACGAGTACAGT----
-----CCACAAAATGCCACAGACGGCAT-ACACAATCCCCCACCCGGTTAGGCAACCGCCACCAAGCACGACACGCTCAC
ATCACATCACAGAGCGCTCAAAGCACAGGCGGCCAAGTCGGCTTGCAGAAAGGATGGCCGCCGCGGTCGCCTTGGCAAGC
CCTCTCCGGCGGCTCCTCCACTTCCCTTGCCCGCGCCGCGCTATCCCCGCACCACTCCGCTTCTTCGCGCGAGGTAAGCC
CTAACCCATTGCCCGGTCGGCCTGATACTCCGATTGAGCTGTTTGTCTAATACTTGGTCGCCATGCGCAGGGCGGTGTGA
CGTGGCCCTCGCCGTCTCGGCGGCCGCAGTCGGAGATTCGTCTGCTAAGGGGGGCGTGCACAGGCATGTAATCGAGGAAG
TCATGGACATTCTGGATATGGTTATCTCTTTTTCTTCATTCTAGCACATTTGTATTTTCCATTGAGCTTCCGTCAGAGTC
TAGTTCGACGTGAAACAGTTATGTTTGAATGTTTCGCTTGCTGAGATTAGATGGCTGACGATAATGCGGATAGTCGGCTT
GTGGACGAGGTGTTTGATTAACTGCCTCAATGGAATTTGAGGTTTCTTTCCACAATTTAAGAAAGTATCATGAGCTTCAG
GTTGTGTTCCAGTAGGCTCATAGACTTCCTCTCTAAGAGGGTATGTTACATGAAAAATTAGGGGAAAATTAGATGTGTTT
ACTGAGATTAGATGGTTGATGATAGTG-CGGATACTTGGCCTATCGAGGAACTGTGCCTCGATGGAATTTGAGACTTCTT
CCCACTATTCATGAGCTTTAGGTTGTGTTCTAATAGGCTGATGCTTCCTCTCTAAGAGAATATTTTTAGTACATGAAACT
TAGGGGAAATGAGATGTGCTTCCTGTTAGCTGTTTTGCTATTGAAGCATGAAGAAAAAGTCGATGAATTGTCCATTTGGT
GTGTGAAAACATAACCTTTCAATCATATTGGCTTTGGTGCCTTTGTAAGAAGAGAATAAAATTGCTTCTTCCAAGGTAAA
CCAAGTGGCAGGAGTTAAAGAATTG---GTGAATAGATGTACGGATAAGCTGTAGGGAGGAAATACAAACTTGATCCTGA
TACCCTATAGTGTCACATGATGCTTGA---AACATAACATAACATAACTGCCTTTTTGCATATTAACAATGTACCATGAG
GTTACTACATGGTTTTTCAGTAAATTTGTTCCAATACTGTAGTTATTCCATTTCCAAGAGAAGGGATATCACCCTGTTTT
ATATTGAGAAAATTACTGGGGTTAC-AGTTACATGATCATTAGTTCTTCAGTTCATGAATTTGTACTGACATCAAGCTTA
TGCAGGCACAAAGGGCTTCCCAACGAAGAGATGTCTTCCACACCAGTTTTCTTACGCCACCTATCATAGCGGAGGCTATG
CTAGCAATTGAAAAGTTAGCTGATATCAAAGCAGTAGCTCAGGGGGGCTATCCACAGGTGGAATTCAATACAATCAAAGG
AGTTGTTGATAGCTACCATTTTTACGTGAATAATAGCTTATATTAACCTATATACCTTGTTTTTCTCATCTTCATATCCA
TTTAGGCTGAGCGGTGCCGAATTTCAGCTGGGCATCCAGACTCTATGAGAAGTGACCCAGATGTAGTTGCTGCTTTGAGG
TTTTCAAGAATTTATAT--TGTAGCCATCACTATCTGTTATGTAAACTGACTTTTAAACCTTTCCTAGCATCTCCGGGAA
TTTCCGATTGGAACCCTGTTCTCATGGTGACTTTCTCGGTGCTATTCTTGGGGCAGGAATTACAAGGGAGAAAGTTGGAG
ATATACTTTTACAGGTCCACACTTTCCACAAATACTCATTTCCCTGAGGCG-TGTCCAGTTTTTCTTTTCCCATCTTATC
ATCATTTGGGTTGTCTCTTTGCTTTTCTGTTAGGGGGAAAGAGGTGCTCAGGTCCTTGTTGATCCAGAGCTTGTTGACTA
TCTGACTTCCACACTAGAAAAGGTAGGTATCTCACAAATTATGTTGCCAATTTTTCGTTTGTGCGAGCTGGATGTGCATG
CTCCCACTTATGTGCCTATGTTTATATAATGGATCAGATCTGAGATATGGTTCAG-------TGACATGCATTCAATGCT
ATGCAAAGCACATAACCTGTATATTACATGCTGATGTGTTTGTTTTTACTCGACATTTTAAGAAATTAGAGCACATTGCG
ATCCTAATTTTTATGTCCGCTTAGATCGCTGAAAATCTTTGTTCTTTTTATGTTAGTCTTTTGTATTTGTGAGTTTTGAC
ACAAATTTGTCCGCGAAGAATCTCCCCATGAACTTTGACTGTTGTTCATGATTTTTTT-AGTATCATTTTCCTTGTTGGA
AGTGCAGATTCTTCTAATTATGGTTTACTCTGAATGATATTTTATTGAACAGGTGGGGAAAGTTGGTGTTTCATGCACCC
AGATTCCCTTGCTTGCTATAGAGTATGAGCCACCAAGGTTTGTTTCACATGTCATCGTGGATCTTAGTGTATATACTGCA
TGCTTAAGATCACAACAACTTATGATGTAATACCCTGGAATAAGCTACTCAGCACTGCCATTGAACTGCAGGACCAAATC
TTTTAAAACTGTAGAATCATCACTTCGGGTTGATGCTGTGGCCAGTGCAGGATTTAAAATATCACGCACAAAGCTTGGTA
GCATGATCAGGTATGAACTTTGAGCTGCTAATTTGTTACTTTATGTTCAGTAAGGCTTTTCTTTACCTTACCATGAATAG
TTGGACATTCTTATCTTATTTTGGACGGTGCTGTTAGCCTGTTGGTTTTTCTAATTACCATGCACAATGCAATTCATTGT
AAGTTTCCTTTTCTGTTTGGTAAGTTCTGGAGATGTTCGTGTGAATTGGTCACTGGTTTCGAAAAGTGGAGCTACCCTCA
AGGCTGGGGATGTTGTTTCTGTCAGTGGGATGGGGAGATTAAAGGTAAAATCAATCACCAGTTATTGTCTTTTTGAATAA
ATGTTTGATGAGCCTTGAATTCTCTTGAGCAAATTAGGATAAAATTATGATGTTACTGTTGCACCTAGTTTACGCTGATG
GAACAATTTTTCTGGTGCTTCAGAGGCATTCCACCAGTGCAGGTTTTTGAGAATATGTTGGGCCTTGCATTGTATTCTGT
ATGCAGTTAAGTTGGACCG--CCCATTCTATATGTTTAGTGTTTGTTGTTTTTTTAATCCTTTCCTTCTTTATTCTGTGA
ACCATACTCCAAAATGTTAAATGGAAAAATTACAACCTTTCGCTGTCCACTTATATTCATAATATGTTTGTTGATATATG
CTGACAAT------TAGATCTTTGCATTATATGATATGCAGAAATACCCATTATAGCATGCTATGGAAGATGTATGCATG
CTACTAGAGATGTCTAATACATTTTCAAATCTCTGTTATATGCTTGAGTTACTTCAAGTCATTATTTCCTGTAGATTGGG
GAAATCGTGACTACGAAGAAAGGCAAATATGTCATTCAGTTGATTCAATATTTGTAGGCCCGTGACTGATCAATTGTTCT
CTGAAGAATACCTGACTGGTGGTATGCATTTTGT----TACCTACTATTTGAAGAAAATTCTCTTTGTTAAGCTTCATGC
ACTAGCCAACGCAACCAAAAGTCCGAACTGATGGAAAGGGCTACGCAATCCACATATACACTTCAACACTCTTGTTCACG
ATTCAAAAAGTAAAGCCGAAAATTTCGCTCTGCTTAGTACAGTAT-ATTCTAAGATTCATCAAGTAATTACTTCATTTTG
CTTAAATTAGCTGGGTTTAACATTTGTGAAGAAACTCGTGAGTATATTGTTAGGGTGTAATTGTATTGCTAAGTCATCAC
TGAGGCAGTATAAAATATCATACTATGCTGCAAAAAACAATTTATTTATGATATGTGTGCTTA---------CCGTATTT
TGGATT-GCACTCTTCTACTCTTTACTGTGCACTTTGCTTTCAGAGTTTGCAAAGTGCTCAGTTGCTTACACAAGCATAA
GGGCTGCAGCTGCCTGCAAA-----------------TATTTACGATGAAACTGATCCATAATATTTAGAAGGGAAAAGG
ACAAGTGGACAGTACATGTAAAGTATATGTGACAGCTTATCTTTAAAGTCCAGATCAAATTGAGAATGAAATTTAGAAGG
TACGCAATTCGCTTAT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AGTTGCAAGTCCATATGTTTTGAATGCATTTATGATGTAAATGGTAGGA
--------------------------------------------------------------------------------
---------------------------------------GTATCATATATGCAAAGATGGGTAGCTGCACATATAGGCTT
GGAAAATCTGCTTCCTTTCATCGGAGTTCTTCATGTGGCAGCTACCACTGATGTAGTCTTTTTGGTATTTTGTAGGATCA
AAGTCTCTCTGTGAACTCCAACTCGTGTGAGGACTCGATCTGCTTTAGGGCAAAAAGGTGAACAAAAAGTATATGTTTTG
GAAA-CAATGGAAATGTGTTTCTTCTATTCATACTAA---AGAGCGATTCGCAAACAACATCCTCAGCAATTTTCTGTCA
TCAGGAAACATGTGACACGACTACGAT
>chr3B_1
ATTTCGTCGAACAGCTCCCGGGCGTTCTTCGTGCGGCCCTGCGCGCTCAGCCCGCGCACCAGGTAGCTGTACGTGAGGCC
GTCCGGCTCGCACCCGTAGACGGGCGCCATCTGGTGGAACACGCGCAGCGCGTCGTTGAGGTGCAGCGACTGCGCGTAGC
CCTTGACGAGCACGTTGAGCGCCCGGGTGTCCGGCGGGATGCCCTCCTCCAGCATCTGCCGGAACAGCGCCGAGACGGTG
TCCATGTACATGTAGTGGACCATGGAGTCGTTGCCCCCGCGCGACAGCAGCGCGGTGAAGAGCGCGTGGTAGGTGTCGGC
GGCGGGGCGCGCGGCCGGGTCGGCGGAGGAGCGCATGAGCGTGTAGACGTGGAACGCCTTGCCGAGCTTGCGGAACTCGC
AGTAGAAGTAGAGGGCGGCCCTGAGGAGGGGCCCCGGGGACGGCAGGGACGGGAGGAGGGAGAAGAAGAGGGCGCAGGTG
CGGTCGAACTCGTGGTAGAGCTGGGCGGTGCCCAGGCGCTTGATGGCGACGAGGAAGGGCCCGGGGTCGGGCCGGAAGGT
GGGCCGGCCGAGGGAGTGGGTGAGGAGCGGGAAGAGGAGGCGGAGGTCGGAGGTGGAGGCGAGCGAGGATGCGAGGACGG
CCGGGGTGAGGCGGGAGGGGAGGGAGGCGATGGCAGTGGAGACGGCGTCGGGTGACGGCGACTGGCTGGGCGCGCGGTGG
CTGCGGCGGAAGCGGTGCGGGGTGCGGCGGGAGGAGGTGGCGAAGGGGAGGTGCTGGGAGAGGGAGGCGCCGGCGGGCGT
GCTGCAGAGGATGCGGCGGAGGAGCGTGCTCATCGCGGCGGCGGCGGCGG---GGATACTGCAACACCAGTACAGTCCGC
AGAACCCACAAAAGGCCACAGACGGCATAACACAATCCCCCACCCGGTTAGGCAACCGCCACCACGCACGACACGCTCAC
ATCACATCACATAGCAC-CAAAGCACAGGCGGCCTAGTCGGCTTGCAGAAAGGATGGCCGCCGCGGTCGCCTTGGCAAGC
CCTCTCCGGCGACTCCTCCACCTCCCTTTCCCGCGCCGCGCTATCCCCACACCACTCCGCTTCTTCGCGCGAGGTAAGCC
CTAACCCATTGCCTGGTCGGCCTGATGCTCTGATTGAGCTGTTTGTCTAAGACTTGGTCGCCATGCGCAGGGCGGTGTGA
CCTGGCCCTCGTCGTCTCGGCGGCCGCAGTCGGAGATTCGTCTGCTAAGGGGAGCGTGCACAGGCATGTAATCGAGGAAG
TCATGGACATTCTGGATATGGTTATCTCTTTTTCTTCATTCTAACACATTTGTATTTTCCATTGAGCTTCCGTCAGAGTC
TAGTTCGACGTGAAACAGTTATGTTTGAATGTTTCGCTTACTGAGATTAGATGGTTGACGATAATGCGGATAGTCGGCTT
GTGGATGAGGTGTTTGATTAACTGCGTCAATGGAACTTGAGGTTTCTTTCCGCAATTTAAGAAAGTATCATGAGCTTCAG
GTTGTGTTCCAGTAGGCTCACAGACTTCCTCTCTAAGTGGGTTTATTACATGAAAATTAGGGGG-AAATTAGATGTGTTT
ACTGAGATTAGATGGTTGATGATAGTGCCGGATGCTTGGCCTATCGGGGAACTGTGCCTCGATGGAATCTGAGACTTCTT
CCCACTATTCATGAGCTTCAGGTTGTGTTCTAATAGGCTGATGCTTCCTCTCTAAGAGAGTATTTTTAGTACATGAAACT
TAGGGGAAATGAGAAGTGCTTCCTGTTAGCTGTTTCGCTATTGAAGCATGAAGAAAAAGCCAATGAATTGTCCATTTGGT
GTGTGAAAACATAACCTTTCAATCATATTGAC--TGGTGCCTTAGTAAGAAGAGAGTAAAATTGCTTCTTCCAAGGTATA
CCAAGTGGCTGGAGTTATTATATAATTAGTGAATAGATGTACGGATAAGTTGTAGGGAGGAAATACAAACTTGATCCTAA
TATCCTATAGTGTCACATGATGCTTGA---AACAGAACATAACATAACTGCCTTTTTGCATATTAACAATGTACCATGAG
ATTACTGCATGACTTTTCAGTAAATTTGATTCAGTTCTGTAGTTAATCCATTTCCAAGAGAAGGCATATCACCCTGTTTC
ATATTGAGCAAATTACTGGGGTTACCAGTTACATGATCATTAGTCCTTCGATTCATGAATTTGTACTGACATCAAGCGTA
TGCAGGCACAAAGGGCTTCCCAACGAAGAGACGTCTTCCACACCAGTTTTCTTACGCCGCCTATCATAGCGGAGGCTATG
CTAGCAATTGAAAAGTTAGCTGGTATCAAAGCAGTAGCTCAGGGGGGCTATCCACAGGTTGAATTCAATAAAATCAAGGG
ACT-----------------------TGAATAATAGCTTATATTAACCTATATACCTTGTTTTTCTCATCTTCATATCCA
TCTAGGCTGAGCGGTGCCGAATTTCGGTTGGGCATCCAGACTCTATGAGAAGTGACCCAGATGTAGTTGCTGCTTTGAGG
TTTTCAAGAATTTATAT--TGTAGCCACCACTACCTGTTATGTAAACTGACTTTTAAACCTTTCCCAGCATCTCCGGGAA
TTTCCGATTGGAACCCTGTTCTCATGGTGACTTTCTCGGTGCTATTCTTGGGGCAGGAATTACAAGGGAGAAAGTTGGAG
ATATACTTTTACAGGTCCACACTTTCCACAAATACTCATTTCCCTGATGCGGTGTCCAGTTTTCCTTTTTCCATCTAATC
ATCATTTGGGTTGTCTCTTTGCTTTTCTGTTAGGGGGAAAGAGGTGCTCAGGTCCTTGTTGATCCAGAGCTTGTTGACTA
TCTGACTTCCACACTAGAAAAGGTAGGTGTCTCGCAAATTATGTTGCCAATTTTTCGTTTGCGCGAGCTGGATGTGCATG
CTCCCACTTATGTGCCTATGTTTATATAGTGGACCAGATCTGAGATATGGTTCATTCTTCATTGACATGCATTCAATGCT
ATGCAAAGCACATAGCCTGTATATTACATGCTGATGTATTTATTTTTACTCGGCACTTTAAGAAATTAGAGCACATTGCG
ATCTTAATTTTTATGTCCGCTTAGATTGCTGAAAATCTTTGTTCTTTTTATGTTAGTCTTTTGTATTTGTGAGTTTTGAC
CCAAATCTGTCCACGAAGAATCTCCCCATGAACTTCGACTGTTGTTCATGATTTTTTTGAGTATTATTTTCCTTGTTGGA
AGTGCTGATTCTTCTAATTATGGTTTACTCTGAATGATATTTTATTGAACAGGTGGGGAAAGTTGGCGTTTCATGCACCC
AGATTCCCTTGCTTGCTATAGAGTATGAGCCACCAAGGTTTGTTTCACATGTCATCGTGGATCTTAGTATATATACTGCA
TGCTTAAGATCACAACAACTTATGATGTAATACCCTGGAATAAGCTACTCAGCACTGCCATTGAACTGCAGGACCAAATC
TTTTAAAACTGTAGAATCATCACTTCGGGTTGATGCTGTGGCCAGTGCAGGATTCAAAATATCACGCACAAAGCTTGGTA
GCATGATCAGGTATGAACTTTAAGCTGCTAATTTGTTACTTTATGTTCAGTAAGGCTTTTCTTTACCTTAACATGAATAG
TTGGACATTCTTATCTTATTTTGGACAGTGCTGTTAGCCTGTTGGTTTTTCTTATTACCGTGCACAATGCAATTCATTGT
AAGTTTCTTTTTCTGTTTGGTAAGTTCTGGAGATGTTCGTGTGAATTGGTCACTGGTTTCGAAAAGTGGAGCTACCCTCA
AGGCTGGAGATGTTGTTTCTGTCAGTGGGATGGGGAGATTAAAGGTAAAATCAATCACCAGTTATTGTCTTTTTGAATAA
ATGCTTGACGAGCCTTGAATTCTTTTGAGCAAATTAGGATAAAATTATGATGTTACTGTTGCACCTAGTTCACGCTGATG
GAACAATTTTTCTGGTGCTTGAGAGGCATTCCACCAGTGCAGGTTTTTGAGAATATGTTGGACCTTGCATTGTATTGTGT
ATGCAGTTAAGTTGGACCCCCCCCATTCTATATGTTTAGTGTTTGTTATTGTTTTGATCTTTTCCTTCCTTATTCTGTGA
ACCATACTCCAAGATGTTAAATGGAAAAATTACAACCTT-CGCTGTCCACTTATAGTCATAATATGTTTGTTGATATATG
CTGACAAT------TAGATCTTTGCATTATATGATATGCAGAAATACCCGTTATAGCATGCTATGGAAGATGTATGCATG
CTACTAGAGATGTCTAATACATTTTCAAATCTTTGTTATATGCTTGAGTTACTTCAAGTCATTATTTCCTGTAGATTGGG
GAAATCGTGACTACGAAGAAAGGCAAATATGTCGTTCAGTTGATTCAATATTTGTAGGCCCGTGACTGATCAATTGTTCT
CTGAAGAATACCTGACTCGTGGTATGCATTTTGATACCTACCTACTATTTGAAGAAAATTCT------------------
----------------------------------------------------------------------TTTGTTCACG
ATTCAAATAGTAAAGCTGAAAATTTCGCTCTGCTTAGTATAGTAT-ATTCTAAGATTCATCAAGTAATTACTTCATTTTG
CTTGAATGAGCTGGGTTCAATAGTTCTAAAGAAACTCGTGAGTACATAGTTAGGGTGTAATTGTATTGCTGATTCATCAC
TGAGGCAGTATAAAAGATCATACTATGATGGAAAAAACAATTTATTTATGCTATATGTGCTTAACATCTACTCCGTATTT
TGGATTTGCACTCTTCTACTCTTTACTGTGCACTTTGCTTTCAGAGTTTGCAAACTGCTCAGTTGCTTACACAAGCATAA
GGGCTGCAGCTGCCTACCTTTGCCTACCTGCAAATACTATTTACGATGAAACTGATCCATAGTGTTTAGAATGGAAAAGG
ACAAGTGGACAGTACTTGTAAAGTATATGTGACAACTTATCTTTAAAGTCCAGCTGAAATTGAGAATGAAATTTAAAAGG
TACGCAATTTGCTTATACCCCCTCCGGTCCTTTTTACTCCGCATGTTATGTTTCAAGTCAAACTTTACAAAGTTTGACCA
AATTTATATTAAAAAATATCAACATCTACAATACCAAATATATATACTATGAAACTAAATTTCATAATAAATCTAAAAAT
ATTAATTTGGCATTGTGAATGTTGATACCTTTTTCTAGAAGTTTGGTCAAAATAAAGATACTTTGACTTCGGACAAAACT
TATATGCAAACTAAAAAGGACCGGAGGGAGTAGTTGCAAGTCCATATGTTTTCAATGTTTTTATGGAGTACTCCCTCCGT
TCCGAATTACTTGTCTTAGATTTGTCTAGATACGGATGTATCTAGCACTAAAATGAGTCTAGATACATCTGTATCTAGAC
AAATCCAAGACAAGTAATTCGGAACGGAGGGAGTAAATGGTATCATACATGCAAAGGTGGGTAGCTGCACATA--GGCTT
AGAAAATCTGCTTCCTTTCATCAGAATTCTTCGTGTGGCAGCTACCACTGATGTAGTCTTCTTGGTATTTTGTAGGATCA
AAGTCCCTCC--GAACTCCAACTCCTGTGAGGACTTGTTCTGCTTTGGGGCAAAAAGGGAAAAGAAAAGTATACATTTTG
GAAACCAATGGAAATGTGTTTCTTCTATTCATACTAATAAAGAGCAATTCGGAAACAACATCTTCAGTAA-TTTCTGTCA
TCAGGAAACATGTGACATGACTACGAT
>chr3A_1
ATTTCGTCGAACAGCTCCCGGGCGTTCTTGGTGCGGCCCTGCGCGCTCAGCCCGCGCACCAGGTAGCTGTACGTGAGGCC
GTCCGGCTGGCAGCCGTAGACGGGCGCCATCTGGTGGAACACGCGCAGCGCGTCGTTGAGGTGCAGCGACTGCGCGTAGC
CCCTGACGAGCACGTTGAGCGCCCGGGTGTCCGGCGGGACGCCCTCCTCCAGCATCTGCCGGAACAGCGCCGAGACGGTG
TCCATGTACATGTAGTGCACCATGGAGTCGTTGCCCCCGCGCGACAGCAGCGCCGTGAAGAGCGCGTGGTAGGTGTCGGC
GGCGGGGCGCGCGGCCGGGTCGGCGGAGGCGCGCATGAGGGTGTAGACGTGGAACGCCTTGCCGAGCTTGCGGAACTCGC
AGTAGAAGTAGAGGGCGGCCCTGAGGAGGGGCCCCGGGGACGGCAGGGACGGGAGGAGGGAGAAGAAGAGGGCGCAGGTG
CGGTCGAACTCGTGGTAGAGCTGGGCGGCGCCCAGGCGCTTGACGGCGACGAGGAAGGGCCCCGGGTCGGGCCGGAAGGT
GGGCCGGCCGAGGGAGTGGGTGAGCAGCGGGAAGAGGAGGCGGAGGTCAGAGGTGGAGGCGAGGGAGGATGCGAGGACGG
CCGGGGTGAGGCGGGAGGGGAGGGAGGCGACGGCGGCGGAGACGGCGTCGGGCGACGGCGACTGGCTGGGCGCGCGGTGG
CTGCGGCGGAAGCGGTGCGGGGTGCGGCGGGACGAGGTGGCGAAGGGGAGGCGGTGGGAGAGGGAGGCGCCGGCGGGCGT
GCTGCAGAGGATGCGCCGGAGGAGCGTGCTCATCGCGGCGGCGGCGGCGGCGGGGATACTGCAACACCAGTACACTCCAC
AGAACCCACAAAAGGCCACAGACGGCACAACACAATCCCGCACCCGGTTAGGCAACCGCCACCAAGCACGGCACGCTCAC
ATCACATCACAGAG-GCTCAGAGCACAGGCGGCCTGGTCGGCTTGCAGAAAGGATGGCCGCCGCGGTCGCCTTGGCAAGC
CCTCTCCGGCGACTCCTCCACTGCCCTTGCCCGCGCCGCGCTATCGCCACGCCACTCCGCTTCTTCGCGCGAGGTAAGCC
CTAACCCATTGCCCGGTCGGTCTGATGCTCTGATTGAGCTGTCTGTCTAAGGCTTGGCCGCCGTGCGCAGGGCGGTGTGA
CCTGGCCCTCGCCGTCTCGGCGGCCGCAGTCGGAGAT---------AAGTGGGGCGTGCACAGGCATGTAATCGAGGAAG
TCATGGACATTCTGGATATGGTTATCTCTTTTTCTTCATTCTAGCACATTTGTATTTTCCATTGAACCTCCGTCAGAGTC
TAGTTCGACGTGAAACAGTTCTATTGACTGCCCC----------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------GTTT
ACTGAGATTAGATGGTTGATGATAGTGC-GGATACTTGGCCTGTCGACGAACTGTGCCTCGATGGAATTTTAGACTTCTT
CCCACTATTCATGAGCTTCAGGCTGTGTTCTAATAGGCTGATGCTTCCTCTCTAAGAGAGTATTTTTAGTACATGAAAAT
TAGGGGAAATGAGATGTGCTTCCTGTTAGCTGTTTCGCTATTGAAGCATGAAGAAAAAGTCAATTAATTGTCCATTTGGT
GTGTGAAAACATAACCTTTCAATCATATTGAC--TGGTGCCTTTGTAGGAAGAGAATAAAATTGCTTCTTCCCAGGTATA
CCAAGTGGCAGGAGTTCTAGAATTG---GTGAATAGATGTACGGATAAGCTGTAGGGAGGAAATACAAAGTTGATCCTGA
TATCCTATAGTGTCACATGATGCTTAGTAGAACATAACATAACATAACTGCCTTTTTGCATATTAACAATGTACCATGAG
GTTACCACATGGCTTTTCAGTAAATTTGTTCCAGTACCGTAGTTAGTCCATTTCCAAGAGAAGGCATATCACCCTGTTTT
ATATTGAGAAAATTACTGGGGTTAC-AGTTACATGATCATTAGTTCTTAAGTTCATGAATTTGTACTGACATCAAGCGTA
TGCAGGCACAAAGGGCTTCCCAACGAAGAGATGTCTTCCACACCAGTTTTCTTACGCCACCTATCATAGCGGAGGCTATG
CTAGCAATTGAAAAGTTTGCTGATATCAAAGCAGTAGCTCAGGGGGGCTATCCACAGGTGGAATTCAATACAATCAAAGG
AGTTGTTGATAGCTACCATTTTTACGTGAATAATAGCTTATATTAACCTATATACCTTGTTTTTCTCATCTTCATATCCA
TCTAGGCTGAGCGGTGCCGAATTTCAGTTGGGCATCCAGACTCTATGAGAAGTGACCCAGATGTAGTTGCTGCTTTGAGG
TTTTCAAGAATTTATATATTGTAGCCACCACTATCTGTTATGTAAACTGAATTTTAAACCTTTCCCAGCATCTCCGGGAA
TTTCCGATTGGAACCCTGTTCTCATGGTGATTTTCTCGGTGCTATTCTTGGGGCAGGAATTACAAGGGAGAAAGTTGGAG
ATATACTTTTACAGGTCCACACTTTCCACAAATACTCATTTCCCTGATGCGGTGTCCAGTTTTTCTTTTTCCATCTTATC
ACCATTTGAGCTGTCTCTTTGCTTTTCTGTTAGGGGGAAAGAGGTGCTCAGGTCCTTGTTGATCCAGAGCTTGTTGACTA
TCTGACTTCCACACTAGAAAAGGTAGGTATCTCACAAATTATGTTGCCAATTTTTCGTTTGCGCAAGCTGGATGTGCATA
CTCCCACTTGTGTGCCTATGTTTATATAATGGAGCAGATCTGAG------------------------------------
--------------------ATATTACATGCTGATGTATTTATTTTTACTCGACATTTTAAGAAATTAGAGCACATTGCG
ATCTTAATTTTTATGTCCGCTTAGATCGCTGAAAATCTTTGTTCTTTTTATGTTAGCCTTTTATATTTGTGAGTTTTGAC
CCAAATCTGTCCGCGAAGAATCTCCCCATGAACTTTGACTGTTGTTTATGATTTTTTTGAGTATTATTTTCCTTGTTGGA
AGTGCAGATTCTTCTAATTATGGTTTACTGTGAATGATATTTTATTGAACAGGTGGGGAAAGTTGGTGTTTCATGCACCC
AGATTCCCTTGCTTGCTATAGAGTATGAGCCACCAAGGTTTGTTTCACATGTCATCATGGATCTTAGTGTATATACTGCA
TTCTTAAGATCACAACAACTTATGATGTAATACCCTGGAATAAGCTGCTCAGCACTGCC------CTGCAGGACCAAATC
TTTTAAAACTGTAGAATCATCACTTCGGGTTGATGCTGTGGCCAGTGCAGGATTTAAAATATCACGCACAAAGCTTGGTA
GCATGATCAGGTATGAACTTTGAGCTGATAATTTGTTACTTTATGTTCAGTAAGGCTTTTCTTTACCTTAACATGAATAG
TTGGACATTCTTATCTTATTTTGGACAGTGCTGTTAGCCTGTTGGTTTTTCTAATTACCGTGCACAATGCAATTCATTGT
AAGTTTCTTTTTCTGTTTGGTAAGTTCTGGAGATGTTCGTGTGAATTGGTCACTGGTTTCGAAAAGTGGAGCTACCCTCA
AGGCTGGGGATGTTGTTTCTGTCAGTGGGATGGGGAGATTAAAGGTAAAATCAATCACCAGTTATTGTCTTTTTGAATAA
ATGCTTGATGAGTCTTGAATTCTCTCGAGCAAATTAGGATAAAATTATGATGTTACTGTTGCACCTAGTTTACTCTGATG
GAACAATTTTTCTGGTGGTTGAGAGGCATTCCACCAGTGCAGGTTTTTGAGAATATGTTGGGCCTTGCATTGTATTCTGT
ATGCAGTTAAGTTGGACCG--CCCATTCTATATGTTTAGTGTTTGTTGTTGTTTTAATCCTTTCCTTCTTTATTCTGTGA
ACCATACTCCAAAATGTTAAATGGAAAAATTACAACCTT-GGCTGTCCACTTATATTCATAATATATTTGTTGATATATG
CTGACAATTACTCCTAGATCTTTGCATTATATGATATGCAGAAATACCCCTTATAGCATGCTATGGAAGATGTATGCATG
CTACTAGAGATGTCTAATATATTTTCAAATCTCTGTTATATGCTTGAGTTACTTCAAGTCATTATTTCCTGTAGATTGGG
GAAATCGTGACTACGAAGAAAGGCAAATATGTCGTTCAGTTGATTCAATATTTGTAGGCCCGTGACTGATCAATTGTTCT
CTGAAGAATACCTGACTCGTGGTATGCATTTTGA----TACCTACTATTTGAAGAAAATTCT------------------
----------------------------------------------------------------------CTTGTTCACG
ATTCAAATAGTAAAGCTGAAAATTTCGCTCTGCTTAGTACAGTATAATTCTAAGATTCATCAAGTAATTACTTCATTTTG
CTTAAATTAGCTGGGTTCAACATTTCTAAAGAAACTCGTGAGTATATTGTTAGGGTGTAATTGTATTGCTAAGTCATCAC
TGAGGCAGTATAAAAGATCATACTATGATGGAAAAAACAATTTATTTATGATATGTGTGCTTA---------CCCTATTT
TGGATT-TCACTCTTCTACTCTTTACTGTGCACTTTGCTTTCAGAGTTTGCGAAGTGCTCAGTTGCTTACACAAGCACAA
GGGCTGCAGCTGCCTGCGAA-----------------TATTTACGATGAAACTGATCCATAATATTTAGAAGAGAAAAGG
ACAAGTGGACAGTACATGTAAAGTATATGTGACAGCTTATCTTTAAAGTCCAGATCAAATTGAGAATGAAATTTAGAAGG
TACGCAATTCGCTTAT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AGTTGCAAGTCCATATGTTTTCAGT--ATTTATGAAGTAAATGGTAGGA
--------------------------------------------------------------------------------
---------------------------------------GTATCATATACGCAAAGATGGGTAGCTGCACATA--GGCTT
GGAAAATCTGCTTTCTTTCATCATAGTTCTTCATGTGGCAGCTACCACTGATGTAGTCTTTTTGGTATTTTGTAGGATCG
AAGTCCCTCTGTGAACTCCAACTCGTGTGAGGACTCAATCTGCTTTAGGGCAAAAAGGCGAACAAAAAGTATATCTTTT-
--------------------------------------------------------------------------------
---------------------------
>SNPs
-----S--------------------S-------------------------------S---------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S--S--S------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
----S-----------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S----S------------
-------------S------------------------------------------------------------------
----------------------------------S---------------------------------------------
-----------S------------------------------------S-------------------------------
--------------------------S---S-------------------S-----------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S--------------S-------------------------
-----S-------------------S---------S---------------S----------------------------
--------------------S----------------S----S-S-----------S-SS----S---------------
--------------------------------------------------------------------------------
------------------S----------------------------------------S--------------------
-----------------------------------S-------------------------S------------------
------------------------------S-SS--------------------------------------------S-
-----------------S--------------------------------------------------------------
--S-----------------------------------------------------------------------------
------------S--------------------S-----------S------------------S---------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S-------------------------S----------------------------------------------------
---------------------------S-------------------------------------S--------------
--------------------------------------------------------------------------------
-----------------------------------------------S---------------------S----------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
---------------------------------S--------------------S-------------------------
--------------S----------------------S---S--------------------------------------
---S----------------------------------------------------------------------------
S-----S---------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
--------------------------S--------------------------------S--------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------S-----------------------------
---------------------------------------S----------------------------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
-----------------S---------------S----------------------------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-------S--------S---------------------------------------------------------------
-----------------S-------S-S----------------------------------------------------
---------------S-----------S--S-------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S----S--------S-------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------SS-----
----------------------S---------------------------------------------------------
-----S----------------------------------------------------S---------------S-----
---------------------------------------------S-----S----------S----S--S---------
-----------------S---------
>forward_868
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--------------------------------------------------CGGGGATACTGCGACACG------------
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>reverse_2238
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-----------------------------------------------------------------------------TTA
TGCAGGCACAAAGGGCT---------------------------------------------------------------
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>forward_1446
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------------------------------------------------------------------CGGATAGTCGGCTT
GTGGAC--------------------------------------------------------------------------
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>reverse_3207
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------TTGTCCGCGAAGAATCTCCC------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_2508
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----------GCGGTGCCGAATTTCAGC----------------------------------------------------
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>reverse_3707
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--------------------------GGTGCTGTTAGCCTGTTGGT----------------------------------
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>forward_2790
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------------------------------------------------GGCGTGTCCAGTTTTTCTTTTC----------
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>reverse_4583
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----------------------CCGAACTGATGGAAAGGGCT--------------------------------------
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--------------------------------------------------------------------------------
---------------------------
