>input_sequence_62898
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----------------------------------------------ATGAGAAACAGGCTGTGTAACATTACTTGCTCTT
CAATTGCATTTTGTGTGGCATGCTGTGCACCTCAGCTTCTGAAAAAGAAGATGGGTATGGATGTTGACGTGAACAGGCGT
GACGTATGCACCATGTGCTGCGGCAACATATTACCTCTGTTGGCCACGCGGCAAAGTCCACGTGGTGTTGCAGTGCCAAG
AAGAATTCGCAGACTGAAAGCCCTGCAAACATTGGGTATTGTCAACATCACACGGGCAAAAGCCATTCTGCAAGACATAG
AAGAGCTTACCCGGCTGCGCAAGCTAGGAGTGATTAGCGTCAACAATAGGAGCAGTCAAGATTTGTTTTTGGCAATTGCA
GGTCTCAGCTGCTTGGAATCGTTGTTAGTGCAGTCACTGGGATATCCTGGTTTATCTACCTGCTTAGATGGCATCTCCTC
ACCTCCAGCAAATCTTCAGAGCCTCAAGCTGTTAGTGCAGTCACTGGGATATCCTGGTTTATCTAGCTGCTTAGATGGCA
TCTCCTCAACTCCAGCAAATCTTCAAAGCCTCAAGCTGTACGGCAACATTGTAAAATTACCCAAATGGCTCCAGCGGCTC
ACAAATCTCGTCAAGCTGAGGCTACGGAGCTCAAGGATTGTGGAGCATGATGCTGCCATACAACTCCTTCCGAAGATACT
GAATCTATCTACTCTGCGCCTGTGGAGGGAGTCGTTCGTGGGCAACGAGATTCATTTCAACTTCTGTCAAGGTGCATTCC
TGAGCCTGGTGGTACTGGAGCTGGATCGCCTAGCTGACCTGAAATTGGTGAAGTTTGAAGAAGAAGTCACCCCGAAGCTC
GAGCTGCTGCAGTTTCGTGCCTGGACTTCTCAAGCCAGCACTGGGTTGTTTACTGGGCTGCCATCACTCCCAAGCCTTAA
GGAATTCATGCTCATGGAGTTCCACAACGGCTACAAGGATACTTTTGTGGAAGAGCTGAGGGGTGAGCTGGCAAAGAATC
AAAATCGACCGGCTTTGAAGAGGCACTGA---------------------------------------------------
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>chr5D_1_TraesCS5D01G337500
AGCACTACCTCTATCCATTCCA-----ATCCATCCATCACAGCTAACTAATGGAGGTGACGGTGCTGAGCGTCGGCGAT-
TCCGTGGTGAATGGAGAGCTGAGCTACGCCCGCTCTGCCCCGGCGGAGCAGGTGGCGCTGCAGCTCGGGGTCCAGCGTGA
CCAGACCTTCTTCATCAAGGACGAGCTCGAGATGATGCAAGCTTTCCTGATGGCCGTTGACGATTACCGGGAGCGCAACA
GCAGGGCGGTCAAGGTATGGGTCAAGCAGGTCCGGGACGTGGCCTACGAAAGTCGAGGACTGCCTCCCGGACTTGGCGGT
CAGTCTGGAAAAGCTGTCCAGGTGGTGGCGTGGCGCGGGCACATTGATGGCCCGTCGCCGTGTGGCCATGCGGATGAAGG
AGCTCAGGGCTAAGGTGGAGGACGTCAGCCAGGGGAACGTGCGCTAGAACCTCATCAACAGCTCAGCTGGTGTCTCTAAG
CACGCCACCGGCACCTCCAATGGCAGTAACAGCGCCGATGCCTCGCTGTTTGGCATCAATGAAGGGAGGAGTATATGACC
AGGCAGCAGGACAAGACAAGTGTGGATCTCGCCCAACTGATCAACACGAGGGGCGTTGATCTCAGAGTGATCTCGGTGTG
GGGAGCAGGTGGTGGCCTCGGGCAAATGTCCACAATCCGGTCGGCCTACAAAAACCCAAATGTAAAGGTGAACTTTCCAT
GCCGGGCACCTCCGAATTAGTTGACCATCACCTTGAGTGCATCGGAAAGCTTCTTCACATGAGATGCCTCTCTCTAAGAG
GATGTGATGGCATTTACCACCTGCCAGATTCGTTGGGTAACCCGAGGCAACTCGAAACTCTAGATATCATGGGTACACGC
ATAATAAGGCTGCCATGGACCATCATCAAGCTTAATAAGCTACGGAACATTTGTGCTGGGGCCATAGAAGATACCGATGA
TGACAGACTTGAAATCAAGTAATGTCAAGAAGATCTACCCGAGGTAATGAGAAACAGGCTGTGTAACATTACTTGCTCTT
CAATTGCATTTTGTGTGGCATGCTGTGCACCTCAGCTTCTGAAAAAGAAGATGGGTATGGATGTTGACGTGAACAGGCGT
GACGTATGCACCATGTGCTGCGGCAACATATTACCTCTGTTGGCCACGCGGCAAAGTCCACGTGGTGTTGCAGTGCCAAG
AAGAATTCGCAGACTGAAAGCCCTGCAAACATTGGGTATTGTCAACATCACACGGGCAAAAGCCATTCTGCAAGACATAG
AAGAGCTTACCCGGCTGCGCAAGCTAGGAGTGATTAGCGTCAACAATAGGAGCAGTCAAGATTTGTTTTTGGCAATTGCA
GGTCTCAGCTGCTTGGAATCGTTGTTAGTGCAGTCACTGGGATATCCTGGTTTATCTACCTGCTTAGATGGCATCTCCTC
ACCTCCAGCAAATCTTCAGAGCCTCAAGCTGTTAGTGCAGTCACTGGGATATCCTGGTTTATCTAGCTGCTTAGATGGCA
TCTCCTCAACTCCAGCAAATCTTCAAAGCCTCAAGCTGTACGGCAACATTGTAAAATTACCCAAATGGCTCCAGCGGCTC
ACAAATCTCGTCAAGCTGAGGCTACGGAGCTCAAGGATTGTGGAGCATGATGCTGCCATACAACTCCTTCCGAAGATACT
GAATCTATCTACTCTGCGCCTGTGGAGGGAGTCGTTCGTGGGCAACGAGATTCATTTCAACTTCTGTCAAGGTGCATTCC
TGAGCCTGGTGGTACTGGAGCTGGATCGCCTAGCTGACCTGAAATTGGTGAAGTTTGAAGAAGAAGTCACCCCGAAGCTC
GAGCTGCTGCAGTTTCGTGCCTGGACTTCTCAAGCCAGCACTGGGTTGTTTACTGGGCTGCCATCACTCCCAAGCCTTAA
GGAATTCATGCTCATGGAGTTCCACAACGGCTACAAGGATACTTTTGTGGAAGAGCTGAGGGGTGAGCTGGCAAAGAATC
AAAATCGACCGGCTTTGAAGAGGCACTGAGCAGAGCTCTATATTTATCGATTTGAAGCTTCCATTTTATTTTCAACCGAT
TCATTGTGTTTCTTATGGAATTGTTTCTTGTGTTTCTTTGTAATGTATGTGTCTGTTACACATCTGTCAGTTTCAGTAAC
CGTGCTATGAAGAATAAATTGTGTACTAAGGCATTGTAACACAGAACTACAAATCATCTGGATTGTGTTTTGATTGTTTC
TCTTTTATTTATTTTTTAACTCTGAATACCCATCGTCAAAATCCTGGATAGGCCATGGATATGGCATGCACCATGCTCTT
CTCTGATCATGTATATGCCACTAAATGAGTAATTTAGGCAGGGGTGAGTCGGTGACGGAGCTTGATCAGGATTTTTGGAG
GGGCCATCTAATGCAAAGATTAGGAAAAAGTGCATCGTTAATGACTAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------
---------------TCAAGAGAAATTAACTTTTGTTTTATGGGATGACAAATAGAGCATGTGCTCTGTCATGGTTTATG
CATGTTCTTTCGCTTAATGCAGCAATAGAGCCTGTCTATACAGTTAACAACTAAATGTACCTTGTTTAAACCCAGGTGTC
AACTATATTTTTCTATAGACTTGGTCGAAATTAAAGAAGTTTGACTTAAACAAATCTAGAACTTCAATAATTTTGAAATG
GAGGAGTACTAAAATAGGCCGT
>chr5A_1
AGCACTACCTCTATCCATTCCA-----ATCCATCCATCACAGCTAACTAATGGAGGTGATGGTGCTGAGCGTCCGCAAT-
TCCGTGGTGAATGGAGCGCTGAACTATGCCCGCTCTGCCCTGGCGGAGCAGGTGGCGCTGCAGCTCGGGGTCCAGCGTGA
CCAGACCTTCTTCATCAAGGACGAGCTCGAGATGATGCAAGCTTTCCTGATGGCCGTTGACGATTACCGGGAGCGCAACA
GCAGGGCGGTCAAGGTATGGGTCAAGCAGGTCCGGGACGTGGCCTACG-AAGTCGAGGACTGCCTCCAGGACTTGGCGGT
CTGTCTGGAAAAGCTGTCCAGGTGGTGGCGTGGCGCAGGCACATTGATGGCCCATCGCTGTGTGGCCATGCGGATGAAGG
AGCTCAGGGCTAAGGTGGAGGACGTCAGCCAGGGGAACGTGCGCTAGAACCTCATCAACAGCTCAGCTGGTGTCTCTAAG
CACACCACCGGCACCTCCAATGGCAGTAGCAGCGCCGATGCCTTGCTGTTTGGCATCAATGAAGGGAGGAGTATATGACC
AGGCAGCAGGACAAGGCAAGTGTGGATCTCGCCCAACTGATCAACACGAGGGGCGATGATCTCAGAGTGATCTCGGTGTG
GGGAGCAGGTGGTGGCCTCGGGCAAACGTCCACCATCCGGTCGGCCTACGAAAACCC-AATGTAAAGGTGAACTTTCCAT
GCCGGGCACCTCAGAATTAGTTGACCATCACCTTGAGTGCATCGGGAAGCTTCTTCACATGAGATACCTCTCTCTAAGAG
GATGTGATGGCATTTATCACCTGCCTGATTCGTTGGGTAACCTGAGGCAACTCGAAACTATAGACATCTCGAGTACACGC
ATAATAAGGCTGCCATGGACCATCGTCAAGCTTAGTAAGCTACGGAACATTTGTGCTGGGGCCATAGAAGATAACGATGA
TGACAGACTTGAAATCAAGACATGTCAAGAAGATCTACCCGAGGTAATGATAAACAGGCTGTGTAACATTACTTGCTCTT
CAATTTCATTTTGTGTGGCATGCTGTGCACCTCAGCTTCTGGAGAAGAAGATGGGTATGGATGTCGACGTGAACAGGCGT
GACGTATGCACCATGTGCTGCTGCAACATATTACCTCTATTGGCCACGCGGCAAAGTACACGTGGTGTTGCAGTGCCAAG
AAGAATTCGCAGACTGAAAGCCCTGAAAACATTGGGTATTGTCAACATCACACGGGCAAAAGCCGTTCTGCAAGACATAG
AAGAGCTTACCCGGCTGCGCAAGCTAGGAGTGATTGGCGTCAACAAGAGAAGCAGTCAAGATTTGCTTTCGGCAATTGCA
GGTCTCAGCTGCTTGGAATCGTTGTTAGTGCAGTCACTGGGATATCCTGGTTTATCTAGCTGCTTAGATGGCATATCCTC
ACCTCCAGCAAATCTTCAGAGCCTCAAGCTGTTAGTACAGTCACTGGGA-ATCCTGGTTTATCTAGCTGCTTAGATGGCA
TCTCCTCACCTCCAGCAAATCTTCAAAGCCTCAAGCTGTACGGCAACATTGTAAAATTGCCCGAATGGATCCAGGGGCTC
ACAAATCTCGTCAAGTAGAGGCTACAGGGCTCAAGGATTGTGGAGCATGATGCTGCCACACAACTCCTTGCGAAGATACC
GAATCTGTCTACTCTGCGCCTGTGGAGGGAGTTGTTCGTGGGCAAGGAGGTTCGTTTCAACTTCTGTCAAGGTGCATTCC
CGAGCCTGGTTGTACTGGAGCTGGATCGCATAGCTGGTCTGAAATCGGTGAAGTTT---GAAGAAGCCACCCCGAAGCTC
GAGCTGCTGCAGTTTCGTGACTGGACTTCTCAAGCCAGCACTGGGTTGTTTACTGGGCTGCCATCACTCCCAAGCCTTAA
GGAGTTCATGCTCATGGAGTTCCACAACGGCTACAAGGATAGTTTTGTGGAAGAGCTGAGGGGTGAGCTGGCAAAGAATC
AAAACCAACCGGCTTTGAAGAGGCACTGAGCAGACCTCTATATTTATCGATTTGAAGCTTCCATTTTATTTTCAACCGAT
TCATTGTGTTTCTTATGGAATTGTTTCTTGTGTTTCTTTGTAATGTATGTGTCTGTTACACATCTGTCAGTTTCAGTAAC
CGTGCTATGAAGAATAAGTTGCGTACTAAGGCATTGTAACACAGAACTAGAAATCATCCGGATTGTGTTTTGATTGTTTC
TCTTTTATTTATTTTT-AACTCTGAAAACCCATCGTCAAAATCCTGGATAGGCCATGGATGTGGCATGCACCATGCTCTT
CTCTGATCATGTATATGCCACTAAATGAGTAATTTAGGCAGGTGTGAGTCAGTGGCGGAGCTTGATCAGGATTTTTGGAG
GGGCCATCTAATGCAAAGATTAGGAAAAGGTACATCGTTAATGACTAAATGCATGTTATTGATATGGCAGAACTAAATTA
GCTTTGGGTGGGGGGGGGGGATGGCCCAGGTTGGCCCCTCTGCCACT---------------------------------
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-------------------------------------------------------------------------GTGTGAG
TAGACCACAAAAATGTCGAGAGAAATTAACTTTTGTTTTATGGGATGACAAATAGTGCATGTGCTCTGTCATAGTTTATG
CATGTTCTTTCGCTTAATGCAGCAATAGAGGCTGTGTATACAGTTAACAACTAAATCTACCTTGTTTAAGCCCAGGTATC
AACTATATTTTTCTATAGACTTGGTCGAAATTAAAGAAGTTTGACTTAAACAAATCTAGAACTTCAATAATTTTGAAAT-
--GGAGTACTAAAATAGACCGT
>chr5B_1
AGCACTACCTCTATCCATTCCATCCCAATCCATCCATCACAGCCAACTAATGGAGGC-ACGGTGCTGAGTGTCGGGCAAG
TCCGTGGTGAATGGAGCGCTGAGCTACGCCCGATCTGCCCTGGCGGAGCAGGTGGCGCTGCAGCTCGGGGTCCAGCGTGA
CCAGGC---CTTCATCAAGGATGAACTCAAGATGATGCAAGCTTTCCTGATGGCCGCGGACGACAAGCGGGAGGGAAACA
GCAGGGTGGTCAAGGTATGGGTCAAGCAGGTCCGGGACGTGGCCTATG-ACGTCAAGGACTGCCTCCAGGACTTGGCGGT
C-------------------------------------------------------------------------------
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-------------------------------------------------------CCAAATGTAAAGGAGAACTTTCCAT
GCTGGGCACCTCAGAATTAGTTGACCATCACCTTGAGTGCATCGGGAAGCTTCTTCACATGAGATACCTCTCTCTAAGAG
GATGTGATGGCATTTATCACCTGCCAGATTCGTTGGGTAACCTGAGGCAACTTGAAACTCTACATATCACGGGTACACGC
ATAATAAGGCTGCCATGGACCATCGCCAAGCTTAGTAAGCTACGAAACATTTGTGCTGGAGCCATAGAAGATAACGATGA
TGACAGACTTGAAATCAAGACATGTCAAGAAGATCTACCCGAGGTAATGAGAAACAGGCTGTGTAACATTACTTGCTCTT
CAATTGCATTTTGTGTGGCATGCTGTGCACCTCAGCTTCTGAAAAAGAAGATGGGTATGGATATCGACGTGAACAGGCGT
GACGTATGCACCATGTGCTGCTGCAACATATTACCTCTGTTGGCCACGTGGCAAAGTACACGTGGTGTTGCAGTGCCAAG
AAGAATTCGCAGACTGAAAGCCCTGCAAACATTGGGTATTGTCAACCCCACACGGGCAAAAGCCGTTCTGCAAGACATAG
AAGAGCTTACCCGGCTGAGCAAGCTAGGAGTGATTGGCGTCAACAAGAGAAGCAGTCAAGATTTGGTTTCGGCAATTGCA
GGTCTCAGCTGCTTGGAATCGTTGTTAGTGCAGTCACTGGGATATCCTGGTTTATCTAGCTGCTTAGATAGCATCTCCTC
ACCTCCAGCAAATCTTCAGAGCCTCAAGCTGTTAGTGCAGTCACTGGGATATCCTGGTTTATCTAGCTGCTTAGATGGCA
TCTCCTCACCTCCAGCAAATCTTCAAAGCCTCAAGCTGTACGGCAACATTGTGAAATTGCCCGAATGGATCCAGGGGCTC
ACAAATCTCGTCAAGCTGAGGCTACAGAGCTCAAGGATTCTGGAGCATGATGCTGCCACACAACTCCTTCCGAAGATACC
GAATCTGTCTACTCTGCACCTGTGGAGGGAGTCGTTCGTGGGCAACGAGGTTCGTTTCAACTTCTGTCAAGGTGCATTCC
CGAGCCTGGTGGTACTGGAGCTGGATCGCCTAGCTGACCTGAAATTGGTGAAGTTTGAAGAAGAAGCCACCCCGAAGCTC
GAGCTGCAGTAGTTTCGTGACTGGACTTCTCAAGCCAGCACTGGG------------CTGCCATCACTCCCAAGCCTTAT
GGAATTCATGCTCATGGAGTTCCACGACGGCTACAAGGATAATTTTGTGGAAGAGCTTAGGGGTGAGCTGGCAAAGAATC
AAAATCAACCGGCTCTGAAGAGGCACTGAGCAGAGCTCTATATTTATCGATTTGAAGCTTCCATTTT--TTTCAACCAAT
TCAATGTGTTTCTTATGG-ATTGTTTCTTGTGTTTCTTTGTAATGTATGCGTCTGTTACACATCAGTCAGTTTCAGTAAC
CGTGCTATGAAGAATAAATTGTGTACTAAGGCATTGTAACACAGAACTAGAAATCATCCGGATTGTGTTTTGATTGTTTC
TCTTTTATTTATTTTT-AACTCTGAATACCCATCGTCAAAATCCTGGATAGGCCATGGATGTGGCATGCACCATGCTCTT
CTCTGATCATGTATATGCCACTAAATGAGTAATTTAGGCAGATGTGAGTCAGTGGCGGAGCTTGATCAGGATTTTTGGAG
GGGCAATCTAATGCAAAGATTAGGAAAAAGTGCATCGTTAATGACTAAATGCATGTTATTGATATGGCAGAACTAAATTA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGAG
TAGACCACAAAAATGTCAAGAGAAATTAACTTTTGTTTTATGGGATGACAAATAGAGCATGTGCTCTGTCATAGTTTATG
CATGTTCTTTCGCTTAATGCAGCAATAGAGGCTGTGTATACAGTTAACAACTAAATCTACCTTGTTTAAACCCAGGTGTC
AACTATATTTTTCTATAGACTTGGTCGAAATTAAAGAAGTTTGACTTAAACAAATCTAGAACTTCAATAATTTTGAAATG
GAGGAGTACTAAAATAGACCGT
>SNPs
----------------------------------------------------------------------------S---
----------------S-----------------------S---------------------------------------
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------------------------------------------------S------------------S------------
-S----------------------------------S----------------S----S---------------------
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---S------------------------S--------------S------------------------------------
---------------S---------------------------------------S------------------------
--------------------------S------S---------------S------------------------------
------------S--------------------------------S-------------------S--------------
----------------S-------------------------S--------------------------S----------
------------------------S---------S--------------------------------------S------
-------------------SS-----------------------------------------------------------
----------------------------------------------------------------S---------------
---------------------S-----------------------------------S----------------------
----------------------------------------------------------------S---------------
-----------------------------------S----------S--S---------------S---S----------
----------------------------------------------------------S---------------------
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--------S-------------------------------------------------S---S-----S-----S-----
-------------------------S--------------------------------S--------------------S
------S------------------------------------------S---S--------------------------
S-----------------------------------------------------------------S-------------
-------------------S------------------------------------------------------------
-----------------------------------------S--------------------------------------
------S-------------------------------------------------------------------------
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-------------------------------------------------S--------S---------------------
----------------S-------------------------------------------S-------------------
------------------------------------------S-------S---S-------------------------
--------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
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------------------------------------------------------------------------S-------
------------------------------S----S--------------------S-----------------------
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-----------------S----
>forward_484
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----------------------------------------------------------------AGCTGGTGTCTCTAAG
CACG----------------------------------------------------------------------------
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>reverse_1589
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--------------------------------------------------------------------CTCCAGCGGCTC
ACAAATCT------------------------------------------------------------------------
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>forward_509
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---------GGCACCTCCAATGGCAGTAA---------------------------------------------------
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>reverse_2371
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--------------------------------------------------GGTGACGGAGCTTGATCAGG----------
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