>input_sequence_62874
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------------------------------------------ATGGCTAACCACGACGAGTGCCTAGCCAAGACGTCGTC
GAGATGCATCACGGAGACCTTCACCGGGACGCACGACTTCGAGGTCACCAGCTACTCGCTGCTCGAAGGCTTGGGCGTCG
GGAAGTTCGTCGGCTCGAGCACGTTCAGCGTCGGCGGCTACGACTGGCAGATCCGATTCTACCCCGACGGAGACAGGGAG
GCGAACGAAGGCGCCTACACATCCGTCTTCCTCTTCTCCACTGAGAGGTCGGTCAAAGTGAAGTTCACTCTGAATCTATT
TGCCAGAGAAGGCAGCATATCTGTACTCAGCGCGGCTAAGCCGTATACATTCGAGTCGGCAGGTCTTACCTATGGGTATA
CCAAGTTTGTGGAGAAGTCCAGGCTGCTACAACTCAACGACTTCACAATAAGATGTAATCTCACCGTCATCAAGGAGCCT
CGCACCCACGATGTCAGCGTGGTCGTCGTCCCGCCGTCGAACCTGCACGACCACTTCGCGAGCATGTTGAAGTGCGGGAA
AGGCGCCGACGTCAAGTTCAGCGTAGGCGGCCAGGTGTTCGACGCGCACGCGTGCGTGCTGGCCGCGCGGTCGCCGGTCT
TCATGGCCGAGCTCTTTGGTCACATGAAGGAGAGCACCGCGCCGTGCATCCAGGTCGACGACATGGAGCCTTTGATCTTC
GAGGCGCTTCTCAGCTTCATCTACACCGACACCATGCCCGATAATTTGTATGTCGGGGCCAACATGCCAGGCCTGCTGGA
TGCCGCGGATCGCTACGGGATGGACAGGCTGAAGGCCATGTGCGAACAGAAGCTCTACTCGAGCATTAGCGTGCAAACGG
TTGCGGCGGCACTAGCTTTAGCAGAGCAGCACCATTGCGTCGCACTAAAAGATGCATGTCTTAGGTTCCTCTCTTCACGA
GACGTGCGCCGAGCTGTCAAAGCAACTCGTGGATTCAAGAACCTCGAAACAAGCTGTCCCTCGGTTGTCATGGAGTTTTT
TGACATGCCTGCCCCGCTGCCATGA-------------------------------------------------------
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>chr2A_1_TraesCS2A01G472600
TCAAATTAACTGCACGCTAAACGTGTTGAGCGCTCGACATCGAAGCAGGCTAGGTCGTTGGATTGACATGATTTGATGGC
CGAGATTCATTGGATCTGCCCCTTTGAATCTTTTTATATTGGTATAGATATAGATACAACGCCACAAAAATCAGCGTTTC
CCCCTTTTTTTCCTTTCTTTTTTTTCTTTTCCATTTTTCTTTTATGTTGTGTGGAAATGCGTGAACTTTTCTCATTAAAT
ACGATGAAGTTGTTTCAAATTCGATGAACTTTTTTTAGATCCGATGATCTTTTTTCCACTTTTGACGAACTTTTTCAAAT
TCGATGAACTTTTTTCAAAGTCAATGATCTTTTTTAAAACCGACGAATTTTTTCAAAATATGCAATATTTTATTTCAAAA
TTATGATTTTTTTGTTTAAAACCAATGAATTGTTTTCCAAATCAATGAATTGTTCTTTCAAAGTCTATGAACCTTTTTCA
TTTTGGTGACTTTTCTTAAAAATTGATAAACTTGTTTGAGGGATTTTCGCAAAAATAAATTGAGGGATCGAGAGCGGTCT
TATTTTTCGAGGAATCGTGATCGGGAAGGAATCGAATAGGGCCGGCCCATGAGGTGGGGCGCCTTGGCGCCAGCTATCTG
TTCGGGCCTGACTCATTGTGGACAATGTTTTAAACCTTTGATGTGTGTTTTCCTTCACTAGTATTGGCCCATCCAATTCT
TTTTAAAAGTATTGGCCCATCTACCCTCGTTCTATCATAGCACGCCTTCTCAAAAAAAAAAAAAAACTAGCCCAGCACGC
TTACGCCGCACCGGAAACTGACAGCCAGAGGCCGAGAGCAGAGAGGACACCCCACCGCGCCGTAAGAGAATAGTTTGATC
GATATGTTCTTTCCCGTAGGTCAGAAGCAGAGAACACCTATACCCTCAAACACACATAACAGATAGGAAAACCTAGGTTT
AGGACGAGAGCCCCTGATCCATCGCCCGTCTAC--CTTCGCCATGGCTAACCACGACGAGTGCCTAGCCAAGACGTCGTC
GAGATGCATCACGGAGACCTTCACCGGGACGCACGACTTCGAGGTCACCAGCTACTCGCTGCTCGAAGGCTTGGGCGTCG
GGAAGTTCGTCGGCTCGAGCACGTTCAGCGTCGGCGGCTACGACTGGCAGATCCGATTCTACCCCGACGGAGACAGGGAG
GCGAACGAAGGCGCCTACACATCCGTCTTCCTCTTCTCCACTGAGAGGTCGGTCAAAGTGAAGTTCACTCTGAATCTATT
TGCCAGAGAAGGCAGCATATCTGTACTCAGCGCGGCTAAGCCGTATACATTCGAGTCGGCAGGTCTTACCTATGGGTATA
CCAAGTTTGTGGAGAAGTCCAGGCTGCTACAACTCAACGACTTCACAATAAGATGTAATCTCACCGTCATCAAGGAGCCT
CGCACCCACGATGTCAGCGTGGTCGTCGTCCCGCCGTCGAACCTGCACGACCACTTCGCGAGCATGTTGAAGTGCGGGAA
AGGCGCCGACGTCAAGTTCAGCGTAGGCGGCCAGGTGTTCGACGCGCACGCGTGCGTGCTGGCCGCGCGGTCGCCGGTCT
TCATGGCCGAGCTCTTTGGTCACATGAAGGAGAGCACCGCGCCGTGCATCCAGGTCGACGACATGGAGCCTTTGATCTTC
GAGGCGCTTCTCAGCTTCATCTACACCGACACCATGCCCGATAATTTGTATGTCGGGGCCAACATGCCAGGCCTGCTGGA
TGCCGCGGATCGCTACGGGATGGACAGGCTGAAGGCCATGTGCGAACAGAAGCTCTACTCGAGCATTAGCGTGCAAACGG
TTGCGGCGGCACTAGCTTTAGCAGAGCAGCACCATTGCGTCGCACTAAAAGATGCATGTCTTAGGTTCCTCTCTTCACGA
GACGTGCGCCGAGCTGTCAAAGCAACTCGTGGATTCAAGAACCTCGAAACAAGCTGTCCCTCGGTTGTCATGGAGTTTTT
TGACATGCCTGCCCCGCTGCCATGACTAGCTTAATTGTAGCTTTCATTGGAGTATATAGTCGTGGACTCGTGGTATATAT
CGTATTTGGTTGATCTTGACACACCATGTAACTGGCATCATCGATGAACTTGTCTTAGAGAATTAATGTGTTCCTTTTGA
TTTGCGCTACAAATTCCTTGTATTTCC--AAAAAAAAGGTTCATTTATTTGGAGTTATATTGGGCTATATGGATACAATT
GACCCTGGCTCTGATTGATTTTTCAAGGTGAAAACTAGATTCTTGCCTTGATAGTTGAATCCGATGACGACGACGCTTGA
GCGTCGTTCTGATTATAATGGCGTTATTGTTGCAGAATCTCATCATCCATGTGGTGTTATGAGATGGTTGATGCTGATAT
GGTCATTACTGCAGTTTGCCGATTGCATATATGATCACTTTGGAA-TTTTTTTTCTCGACCGCTCTTAGCTTTGGCTTTT
AAAACTA-CTAGTAAGTGTTGGTTATGTGCATCCTAACTATGCAGAGTCCGAGTGTGTGTTCATTATGTTATGTATGTTC
TTGAAGATACAATTTGGTACTCGATTTTCTAAGGGAAAAGCTTACCATCACCCGGCGGATGGCAACGGCCACGTCCGTCA
TCTCCCCTGCATGACACGTGTTAAGTGAGGGCTCGCATACTGTCCTTTATCGAACGCGCTTCTGCAACAGGGGCTATGCT
TCTGAAACATGTGCGGTGTTGTAATGGTCTACGATGGGTCTATGTTTTGCAATAAAATCTCTGTTGCGGACATTTTTATG
CAACTAGTCCTCAATTGCAAAAAAAACAACAAAACAATTGTTGCAAAAAAAAAATCTGTAACAAGACCTGTGTTGTAGTG
ATGGAGGCGCGCTCAGCTCGCTCGATACGGCAAATCTGACGGCTCGCGATTCGTCTGATCTTTTAAAAAGATCAGCGGGC
GGACGCGTAGCACGCCCCATATTTTTTCTACAAACTTAGACGGGGTTAGGATCCGAGCCAGCGTGTTTT
>chr2D_959
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------------------------------------------------------------------------------TT
AGGACGCGAG-CCCTGATCCATCGCCTTCCTATCTCTTCGCCATGGCTAACCACGGCGAGTGCCTAGCCAAGACGTCGTC
GAGATGCATCACGGAGACCTTCACCGGGACGCACGACTTCGAGGTCACCAGCTACTCGCTGCTCGAAGGCATGGGCGTCG
GCAAGTTTGTCGGCTCGAGCACGTTCAGCGTCGGGGGCTACGACTGGCAGATCCGATTCTACCCCGACGGAGATAGGGAG
GCGAACGAAGGCGCCTACGCATCCGTCTTCTTGTTCTCCACTGAGAGGTCGGTCAAAGTGAAGTTCACTCTGAATCTATT
TGCCAGAGAAGGCAGCATATCTGTACTCAACGCCGCTAAGCCGTATACATTCGAGTCGGCGGGTCTTACCTATGGGTATA
CCAAGTTTGTGGAGAAGTCCAGGCTGCTACAACTCAACGATTTCACAATAAGATGTAATCTCACGGTCATCAAGGAGCCT
CGCACCCAAGATGTAAGAGTGGTCGTCGTCCCGCCGTCGAACCTGCACGACCACTTCGCGAGCATGTTGAAGAGCGGGAA
AGGCGCCGACGTCAAGTTCAGCGTAGCCGGCCAGGTGTTCGACGCGCACGCGTGCGTGCTGGCCGCGCGGTCGCCGGTCT
TCATGGCCGAGCTCTTTGGTCACATGAGGGAGAGCACCGCGCCGTGCATCGAGATCGATGACATGGAGCCTTTGATCTTC
GAGGCGCTTCTCAGCTTCATCTATACGGACACCATGCCGGATAATTTGTATGTCGGGGCCAACATGCCAGGCCTGCTGGA
TGCCGCGGATCGCTACGGGATGGACAGGCTGAAGGCCATGTGTGAACAGAAGCTCTACTCGAGCATTAGCGTGCAAACGC
TTGCGGCGACACTAGCTTTAGCAGAGCAACACCATTGCGTCGCACTAAAAGATGCATGTCTTAGGTTCCTCTCTTCACGG
GACGTGCGCCGGGCTGTCAAAGCAACTCGTGGATTCAAGAACCTCGAAACAAGCTGTCCCTCGGTTGTCATGGAGTTTTT
TGACATGGCTGCCCGGCTGCCATGAGTAGC----TTGTAGCTTTCATTGGAGTATAGCCGCA----------GTATATAT
CGTATTTGGTTGATCATAACATACCATGTAACTGGCATCATCGATGAACCTCGAG---------AATGTGTTCCTTCTGA
TATGCGCTACAAATTACTTGTATTTCAAAAAAAAAACGGTTCATTTACTTGCATTTCTATTGGGCTATATGCATACAATT
GACCCCGGCTCAGATTGATTCTTCAAGGTGAAACTTAGATTCTTGCCATGATGGTTGAATCCGGTGACGACGACGCTTGA
GTGTCGCTCCCTCTCTGACGGTGTTGCTGCTGAAGAATCTCGTCATCTGTGTAGTGTCATGAGATGGTTAGTGCGGATAT
GATCATTGCTGCAGTTTGTCGATTGCATATCTGATCCCGTTGGAGTTTTTTTTTCTCGACCACTCTTAGCTTTGGTTTGT
TATGACTGCTAGTTAGTATTGGTTATTTGCATCCTAACTATGCAGAGGTCAGGTGTGTGCTCATTGTTTTATGTATCTTC
TTGAAGATATAATTTGTTATTTGATTTTCTAA------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
------S---S---------------SSS---S----------------------S------------------------
----------------------------------------------------------------------S---------
-S-----S--------------------------S--------------------------------------S------
------------------S-----------S-S-----------------------------------------------
-----------------------------S---S--------------------------S-------------------
----------------------------------------S-----------------------S---------------
--------S-----S--S------------------------------------------------------S-------
--------------------------S-----------------------------------------------------
---------------------------S----------------------S--S----S---------------------
-----------------------S--S-----------S-----------------------------------------
------------------------------------------S------------------------------------S
--------S-------------------S--------------------------------------------------S
-----------S--------------------------------------------------------------------
-------S------S----------S----SSSS----------------------SSSS-SSSSSSSSSSS--------
---------------S-S---S---------------------------S-SSSSSSSSSSSSS------------S---
-S-------------S----------S---------S----------S---S-S--S--------------S--------
-----S-----S--------S------------SS------------S----S----------S----------------
-S----S--SSSS-S-S-S--S---SS--S--S--------S-----SS---S----S-----------SS---S-----
-S-----S----------S-----------S-----S-S-----S----------------S-------------S--S-
S-SSSSS------S---S--------S--------------------SS-SS-------S-----S-S--------S---
---------S------S--S-S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_873
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-----------------------------------------------------ACCGCGCCGTAAGAGAATAG-------
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>reverse_2656
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---------------ACGTGTTAAGTGAGGGCTCG---------------------------------------------
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