>input_sequence_62863
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----------------------------------------------------AGTAGCATCGGCCGGCGAGCTTGTGCGG
AGCGGTCGACCGACCGACATGTCGAGGCCGAGCAGGAGCGACGCGCACCTGTCCCCCGTGGACGAGGCGGTGAGGGTGGA
CGAGGTGCGGGGGTACTACGACGGCGCGGCGCCCAAGCGCCACTCCAAGCCCTCCCGCAGCGACCACTCCGCCGTGTACA
CCGACGCGCTCGCCGGCCCCGGCGCCGACGGCTCCCACCCCGAGCTCGACAAGTTCCAGGACCTGGAAGCCCACTCCGAG
GTGCGGTCGCACCATCTCCTCCTGTTCATCAAAACCTCTCGTAGATACATAGAATCTACAAGCCGGAGCGGAGCCGCTGA
TGCCGCTGTGCGTGTGGTTTCTTGTCGCAGAAACTGGTGTGCGAGGGCGGGAAGGCGGGCGAGGAGTTCGTGGAGACGGA
GTACTACAAGGACCTCGGCTGCGTCGGCAAGCAGCATCACACGGTCACTTCCTTCTTCCCCTGCATTG---TACTGATTT
TTTCTCTGAATTATATGAGCCGCTGAACTGAATCGTGGTCGATGGACGTGGTGCAGACTGGCACGGGCTTCATCAAGGTG
GACAGGCCGGCCGGCGCCTCGTTCGAGCTCTCCGAAGACCCGGATGCGACGGAGCGCCATGCTTCCTCCAAGGGAAACCC
CGCCACAAACGAGTGGATCCCGTCAGCGGACACGGTAGGAGGACAGATACTGCCCC-TCTCCCCCTCTTCT--------A
TTTCTGCAGTTCTCATCGACGATTGACACGCTTTGTGCTTGTTTCAGGTGTATCAGGAGGAGTCAGACAAGCCCAACAGA
AGCGACAGCTGAGCCGGGCAATGGTCTACAGCCAACATCATAC-----TACATCAGATGCGTGTGACTTCCGGTTTAATC
GGCTATT-AAAAAATTAAGGGCGCGTATTCGTGTAT---------TTGTTATTGGGATTCTTGTGAGGTTCTATCTACT-
----TGTCAAACTCGTGGGTCATTTTGGGAACCTGTGTTGTGGAACTGAATGAGGTACAGGAAA-TAAA-----------
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>chr4D_1_TraesCS4D01G213800
ATCATACCCTCAATGTTGTTTTAGGACTATCGTTACACTTAACGATATCCTAAGATCCGGAAAACGTGATCACCATCAAC
ACTTGAGCCGGTCTTAGAGGTGAGACCAAGAACCTATTGTTTACCGTTTATCATTTCACACGTGCATATAAGTTTTCCAC
TAAATTGCATATTACAGGATCATAGCAGTTATAGCATAAAATATAAACTCTTAATTATAAATAAGGGAAATATAATAATA
CAATATTATTGTCTCTAGGGCATACTTTCAATAACCACTCCCTCGCCGATGGATCCGGAGCCACCGCCACCGCCGCCCTG
CTCGCGCGAGAGAGGAGAGAGATAGACAACTAGGGATGGGAGTGAGGGCCGGCCCAATCGCTTCGGACACGGCCATTAAC
GGCCGTTAGTGCCTCGCCGTCACCGTTGTCGACCCGTGAGTGATCGGCCACGTCGAAACGCTCTTAGAAAACGAATCAGT
GTTTTTGCCACTGTCAAAAGTATGTCGCGGTGCAAAGTGTCACATTTTGTAAAGTAATGGTTTTACGAGAGCTGCGACGC
TAACGTGGTGGTTTTGTGCATTTTACTCATGCAGAGGCTGGGTAATCCTCCTTTTCTAATAAAAATAAAATAAACCCCAC
GCATTTGAGCAGAACGCCGTGTCTGAACGCCTGCGGATAAACCACGGCCA------CGGCCAGGGCCCCGGTCTCGCCGT
CTCCGACGTGACGGCCGAGCGGCTGCGCATTCCTGGCCTCTCGTCCGTGGTCCGTCCATCTTCTCACTAACCCAGCGACG
TACCTCTCTATCCACCCAGCTCCCCGCGGATATTTTCTCCTCACAAGCATCTCGCTGCCAGGGCAGGCCACCGTCGCGCG
CGGCATAATAGCACGGCGCTTTCAGCCTCCTCCACCACCACCGGCACCGCCCGCGCAATTAACACCACCGCTAACGAGCG
------CGGCCGCCGCATAACAATACACAACACCGAGGTACGCTCCGGCAGCAGTAGCATCGGCCGGCGAGCTTGTGCGG
AGCGGTCGACCGACCGACATGTCGAGGCCGAGCAGGAGCGACGCGCACCTGTCCCCCGTGGACGAGGCGGTGAGGGTGGA
CGAGGTGCGGGGGTACTACGACGGCGCGGCGCCCAAGCGCCACTCCAAGCCCTCCCGCAGCGACCACTCCGCCGTGTACA
CCGACGCGCTCGCCGGCCCCGGCGCCGACGGCTCCCACCCCGAGCTCGACAAGTTCCAGGACCTGGAAGCCCACTCCGAG
GTGCGGTCGCACCATCTCCTCCTGTTCATCAAAACCTCTCGTAGATACATAGAATCTACAAGCCGGAGCGGAGCCGCTGA
TGCCGCTGTGCGTGTGGTTTCTTGTCGCAGAAACTGGTGTGCGAGGGCGGGAAGGCGGGCGAGGAGTTCGTGGAGACGGA
GTACTACAAGGACCTCGGCTGCGTCGGCAAGCAGCATCACACGGTCACTTCCTTCTTCCCCTGCATTG---TACTGATTT
TTTCTCTGAATTATATGAGCCGCTGAACTGAATCGTGGTCGATGGACGTGGTGCAGACTGGCACGGGCTTCATCAAGGTG
GACAGGCCGGCCGGCGCCTCGTTCGAGCTCTCCGAAGACCCGGATGCGACGGAGCGCCATGCTTCCTCCAAGGGAAACCC
CGCCACAAACGAGTGGATCCCGTCAGCGGACACGGTAGGAGGACAGATACTGCCCC-TCTCCCCCTCTTCT--------A
TTTCTGCAGTTCTCATCGACGATTGACACGCTTTGTGCTTGTTTCAGGTGTATCAGGAGGAGTCAGACAAGCCCAACAGA
AGCGACAGCTGAGCCGGGCAATGGTCTACAGCCAACATCATAC-----TACATCAGATGCGTGTGACTTCCGGTTTAATC
GGCTATT-AAAAAATTAAGGGCGCGTATTCGTGTAT---------TTGTTATTGGGATTCTTGTGAGGTTCTATCTACT-
----TGTCAAACTCGTGGGTCATTTTGGGAACCTGTGTTGTGGAACTGAATGAGGTACAGGAAA-TAAATCAGAAGTATG
TTCAGTTTGTGTTAGAACTGCCCCCATACCAAGCAGAAGAGAAACCATAGGATAGGATTAGCCT-----TAGAGCAATCA
CAATTCACGAGAGGCGAAGACACATGGTAT--------------------------------------------------
----------------------------------TATTTTTCTGTGCGTAGAGAGA-----TATGCAGCAAGTACACATA
CACCAGGAAGCTCAGTAGTAGGTAAAT-------------ACTCCTGCAAGTGTTTTTTCCCCGAGGAATCCACACCTGC
GGAATTTTTACTGATTGATTGATTGATGTTGGCACGGAACGG-----ACGGCGAAGAGACGGGCTGATCGGTCAGTCGGA
GGCGAGGCG---------TGGGTGGATGCGGAGGCGGGCGAGCTCGGCGTCGATGCGGCCGGTGAGGATGAGGGCGAACA
TGCGGTAGTCGCAGAGCAAGGACCAGACGGGGTGGCCGAACGTGGCCGGCCGGTTGCCCTCCACGAAGAAGTGGCTGTAC
CAGGCCATGCCGTAGCCGAGCACGGGGCAGGCCACCAGGAGCGCGGCGCGGCCGGTGGCGGCCGCCAGCAGCGCGCAGAC
CAGCGAGGCGAGCGTGCCGGCGAAGTGCCAGCGCCGCGTGGCCGGCTTCGAGTGCTGGCCCAGGTAGAACCCCCAGAACT
CCTCCATGCTCCCGAACTCCTTCCCCCTCGCCCCTCCTCCTCCCATCGCCTCTACTATTTGCTTGGGCGGGCTGCGGTTA
-------------------------------------------CTACTTTCTCTGC----GGGGTTCAAGATGATAAGGA
GGCTGGCTGGCTGGCGACCAACTGACTTGCGCTGCCTATTTTTATTGAACAAGTCGTGATTCTAATGACGGTCCGGTGAA
TCTGATGCATTTGCCGGTCTGACGCACA-----------ACACAGTTTAGACGGCGTGAACGCGACGGGGCGATACGCTC
CAAGAGGGA--------TATGGATGAGTGGATTAATCAAACATGGCGATCTCC-TGCGCGCTGGTACCTCAGCATTGCTG
CAGACGTGAGCACTCACGTATG---AGCCAAACTATTGCCAACAAATAACTTAGCAGAAC
>chr4B_2
-TCATACCGTCAATGTTGTTTTAGGACTATCGTTACACTTAATGATATCCTAAAATGTGGAAAACATGATCACCAACAAC
-CTTGAGCTGGTTTTAGAGGTGAGACTAGGAACCTATTGTTTACCGTTTATCCTTTCACACGTGCATATGAGTTTTTCAC
TGAATTGCATATTCTAGGATCATAACAG-TATAGCATGAAATATAAACTCTTAATTATGAATAACAGAAATATAATAATA
CAATATTATT------AGGACATATTTCCAACAACAGCTCCCTCGCCGATGGATCCGGAGCCACCGCCACCGCCGCTCTA
CCCGCGAGAGAGAGGAGAGAGATAGACAACTAGGGATGGGAGTGAGGGTCGTCCCAATCGCTTTGAACACGGCCATTAAC
GGTCATTTGTGCCTCGCCGTCACCGTTGTCGGCCA-TGAGTGATCAGCCACGTCAAAACGCTCTCAGAAAATGAATCAG-
-----------TGTTAAAATTGTGTCGCGGTGCAAAGTGTCACATTTTGAGAA---------------------------
----GTGGTGGTTTT-----------------------------------------------------------------
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>chr4B_640
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-------------------------------------------------------------------------------C
GCATTTGAGCAGAACGCCGTGTCTGAACGCCTGCGGATAAA------CCA------CGGCCAGGGCCCAGGTCTCGCCGT
CTCCGACGTGACGGCCGAGCGGCCGCGCATTCCTGGCCTCTCGTCCGT-------CCATCTTCTCGCTAACCCACCGACG
TACCTCTCTATCCACCCAGCTCCCCGCGGATATTTTCTCCTCACAAACATCTCGCTGCCGGGGCAGGCCACCGTCGCGCG
CGGCATAATAGCACGGCGCTTTCAGCCTCCTCCTCCACCACCGGCACCGCCCGCGCAATTAACACCACCGCTAACGAGCG
------CGGCCGCGGCATAACAATACACACCACCA--GTACGCTCTGGCAGCAGTAGCATCGGCCGGCGCGCTTGTGCGG
AGAGGTGGATCGATCGACATGTCGAGGCCGAGCAGGAGCGACGCGCACCTGTCCCCGGTGGACGAGGCGGTGAGGGTGGA
CGAGGTGCGGGGGTACTACGACGGCGCGGCGCCCAAGCGCCACTCCAAGCCTTCCCGCAGCGACCACTCCGCCGTGTACA
CCGACGCGCTCGCCGGCCCCGGCGCCGACGGCTCCCACCCCGAGCTCGACAAGTTCCAGGACCTCGAAGCCCACTCCGAG
GT-CGGTCGCACCATCTCCTCCTGTTCATCAAACTCGTAGTTGAATCTTACAAGC----------------AGCTGACGC
GGCGGTGGTGCGTGCGGTTTGTCGTCGCAGAAACTGGTGTGCGAGGGCGGGAAGGCGGGCGAGGAGTTCGTGGAGACGGA
GTACTACAAGGACCTCGGCTGCGTCGGCAAGCAGCATCACACGGTCGCTGCCTTCTTCCTCTGCATTGATATACTGATTT
TTTCTCTGAGTTATATGAGCCGCTGAACTGAATCGTGGTGGATGGACGTGGTGCAGACTGGGACGGGCTTCATCAAGGTG
GACAGGCCCGCCGGCGCCTCGTTCGAGCTCTCGGAAGACCCGGATGCGACGGAGCGCCATGCTTCCTCCAAGGGGAACCC
CGCCACAAACGAGTGGATCTCGTCAGCGGACACGGTAGGAGGACAGATACTGCCCC-TCTCTCCCTCTTCT--------A
TTTCCGCAGTTCTCATCGACGGTTGACACGCTTTGTGCTTGTTTCAGGTGTATCAGGAGGAGTCAGACAAGCCCAACAGA
AGCGACAGCTGAGCCGGGCAATGGTCTACAGACTACAGCCAAACATCATACATCAGATGCGTGTGTCTTCCGGTTAAATC
GGCTATT-AAAAAATTAAGGGCGCGTATTCGTGTAT---------TTGTTATTGGGATTCTTGTGAGGTTCTATCTACTC
TACTTGTCAAACTCGTGGGTCGTTTTGGGAGCCTGTGTTGTGGAACTGAATGAAGTACAGGAAA-TAAATCAGAAGTATG
TTCAGTTTGTGTTAGAACTGCCCCCACACCAAGGAGAAGAGAAAG---------------GCCT-----TAGAGCAATCA
TAATTCACGAGAGGCAAAGACACATGGTAGTAA-----------------------------------------------
-------------------------------TAGTATTTTTCCGTGCGTAGAGAAATGAAATGCGCAGGAAGTACACATA
GACCAGGAACCTCAGTAGACAGATACTCCTACTGTCCTACACACCTGCAAGTGCGCGGGATTTTT---------------
-------------ATTGATTGATTGATGTTGGCACGGCACGG-----ACGGCGAAGAGACGGGCGCATCGATCAGTCGGA
GGCGATGCGCGGGCGCGGCGGGTGGATGCGGAGGCGAGCGAGCTCGGCGTCGATGCGGCCGGTGAGGATGAGGGCGAACA
TGCGGTAGTCGCAGAGGAAGGACCAGACGGGGTGGCCGAAGGTGGCCGGCCGGTTGCCCTCCACGAAGAAGTGGCTGTAC
CAGGCCAGGCCGTAGCCGAGCACGGGGCAGGCCACCAGGAGCGCGGCGCGGCCGGTGGCGGCCGCCAGCAGCGCGCAGAC
CAGCGAGGCGAGCGTGCCGGCGAAGTGCCAGCGCCGCGTGGCCGGCTTCGAGTGCTGGCCCAGGTAGAACCCCCAGAACT
CCTCCATGCTCCCGAACTCCTTCCCCATCGCCTCCG---------------------TTTGCTTGGGCTGCGGTTGCTGC
CGA-------ATTGCGATGTGTTGGCGAGATGTGTCCGTGTACCTACCTTCTCTGC----GGGGTTCAAGATAAGGA---
----GGCTGGCTAGCGACCAACTGACTTGTGCTGCCTATTTTTATTGAACAAGTCGTGATTCTATTGACGGTCCGGTGAA
TCTGATGCATTTGTCGGTCTGATGCACA-----------ACACAATTTAGGCGGCGCGAACGCGATGGGGCGATGCCCTC
CAAGAGGGATATGGAATTATGGATGAGTGGATTAAACAAACATGGTGATCTCTTTGCACGCTGGTACCTC----------
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>chr4A_644
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---TTTGAGCAGAACGCCGTGTCTGAACGCCTGCGGATAAA------CCACGGCCCCGGCCAGGGCCCCGATCTCGCCGT
CTCCGACGTGACGGCCGAGCGGCCGCGCATTCCTGGCCTCTCGTCCGT-------CCATCTTCTCGCCAACCCAGCGACG
TACCCCTCTATCCACCCAGCTCCCCGCGGATATTTTCTCCTCACAAACATCTCGCTGCCGGGGCAGGCCACCGTCGCACG
CGGCATAATAGCACGGCGCTTTCAGCCACCATCACCACCG------CCGCCCGCGCAATTAACACCACCGCTAACGAGCG
TGGCCACGGCCACGGCCTAGCAATACACACCACCA--GTACGCTCCGGCAGCAGTAGCATCGGCCGGCGCGCTTGTGCGG
AGAGGTCGGTCGAGCGACATGTCGAGGCCGAGCAGGAGCGACGCGCACCTGTCCCCGGTGGACGAGGCGGTGAGGGTGGA
CGAGGTGCGGGGGTACTATGACGGCGCGGCGCCCAAGCGCCACTCCAAGCCCTCCCGCAGCGACCACTCCGCCGTGTACA
CCGACGCGCTCGCCGGCCCCGGCGCCGACGGCTCCCACCCCGAGCTCGACAAGTTCCAGGACCTGGAAGCCCACTCCGAG
GT-CGGTCGCACCATCTCCTCCTGTTCATCAAGACCTCTCGTGGATACTTAGAATCTACAAGCCGGAGCGGAGCCGCTGA
TGCCGCGGTGCGTGTGGTTTCTTGTCGCAGAAACTGGTGTGCGAGGGCGGGAAGGCGGGCGAGGAGTTCGTGGAGACGGA
GTACTACAAGGACCTCGGCTGCGTCGGCAAGCAGCATCACACGGTCGCTGCCTTCCTCCTCTGCAA------------TT
TTTCTCTGAATTATATGAGCCGCTGAGCTGAATCGTGGTCGATGGACGTGGTGCAGACTGGCACGGGCTTCATCAAGGTG
GACAGGCCCGCCGGCGCCTCGTTCGAGCTCTCCGAGGACCCGGATGCGACGGAGCGCCATGCTTCCTCCAAGGGAAACCC
CGCCACAAACGAGTGGATCCCGTCAGCTGACACGGTAGGAGGACAGATACTGCCCCCTCTCTCCCTCTTCTTTGCTGGCA
TTTCTGCAGTTCTCATCGGCGATTGACACGCTTCGTGCTTGTTTCAGGTGTATCAGGAGGAGTCAGACAAGCCCAACAGA
AGCGACAGCTGAGCCGGGCAATGGTCTACACTCTACAGCCAACATG-----ATCAGATGCGTGTGACCTCCGGTTAAATC
GGCTATTAAAAAAATTAAGGGCGCGTATTCGTGTATATCTGCCATTTGTTATTGCGATTCTTGTGAGGTTCTATCTACT-
-ACTTGTCAAACTCGTGGGTCGTTTTGGGAGCCTGTGTTGTGGAACTGAATGAAGTGCAGGAAAATAAATCAGAAGTATG
TCCAGTTCGTGTTAGAACTGCCCCCATACCAAGGAGAAGAGAAAG---------------GCCTTAGAGTAGAGCAAACA
TAATTCACGAGAGGCAAAGACACATGGTAGAACTACTACTACCTCTGTCCCACAACGTTTTTGACACTAATGTAGTGTTA
AAAACGTTCTTATATTTTGGAAAGGAGGGAGTAGTATTTTTGTGTGCGTAGAGAAA-----TGCGCAGCAAGTACACATA
CACCAGGAACCTCAGTAGACAAATGC--------TCCGACACACCTGCAAGTGCGCGGAATCTTT---------------
-------------ATTGGTTGATTGATGCTGGCACGGCACGGCACGGACGGCGAAGAGGCGGCCGGATCGGTCAGTCGGA
GGCGAGGCG---------CGGGTGGACGCGGAGGCGGGCGAGCTCGGCGTCGATGCGGCCGGTGAGGATGAGGGCGAACA
TGCGGTAGTCGCAGAGGAAGGACCAGACGGGGTGACCGAAGGTGGCCGGCCGGTTGCCCTCCACGAAGAAGTGGCTGTAC
CAGGCCATGCCGTAGCCGAGCACAGGGCAGGCCACCAGGAGCGCGGCGCGGCCGGTGGCGGCCGCCAGCAGCGCGCACAC
CAGCGAGGCGAGCGTGCCGGCGAAGTGCCAGCGCCGCGTCGCCGGCTTCGAGTGCTGGCCCAGGTAGAACCCCCAGAACT
CCTCCATGCTCCCGAACTCCTTCCCCATCTTCGGTTTGCTTG----------------------GGGCTGCGGTTGTTGC
CTGCTTGCGTATTGCGGTGTGTTGGCTAGATGTGTCCGTATACCTACTGCTTTCTCTGTGGGGGTTCAAGATAAGGA---
----GGCTGGCTAGCGACCAACCGACTTGCGCTGCCTATTTTTATTGAACAAGTCGTGATTCTAATGACGATCCGGTGAA
TCTGATGCATTTGTCGGTCTGATGCACATGCTTTGGCCAACACAATTTAGGCGGCGTGAACACGACAGGGCGATATG---
-----------------------------------------------------------------ACCTCAACATTGCTG
CAGACGTGAGCACTCACGTAGTATCAGCCAAACTATTGCCAACAACTAACTGATCAGAAC
>SNPs
S-------S---------------------------------S----------S--SS-------S---------S----
S-------S---S-------------S-S-----------------------S----------------S------S---
-S-----------SS---------S---S--------S--------------------S-----SS--------------
----------SSSSSS---S----S--S---S---SS---------------------------------------S--S
-S----S-----------------------------------------S--S-----------S-S--------------
--S-S--S-----------------------S--SS---------S--------S---------S------S-------S
SSSSSSSSSSS---S----S-S---------------------------SS--SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-----------------------------------------SSSSSS---------------------------------
-----------------------S------------------------SSSSSSS----------S--------------
----------------------------------------------S------------S--------------------
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-------------S---------------S----SSS--------------------------------S----------
--S------S---S------------------------------------------S-----------------------
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--S---------------------------------------S-----S-------------------------------
------S-------------------------------------------------------------------------
----------------------------------------------S--S---------S--------------------
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--------S-----------------------------------------------------------------------
-------------------------------------------------------------S------------------
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-------------------------------S-S---S-SS----------------------------------S----
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---------------------S--------S----------------------S--------------------------
---------------------------------S----------SSSSSSSSSSSSSSSS--------------------
S--------------S-------------S--------------------------------------------------
------------------------------------------------------S-------SS----------------
---------S--------SSS-SS-S----------------S----------SSSSSSSS-SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS------------------------S--------------------------S---------------
------------------S-------------------------------------------------------------
----------------S-----------------------S---------------------------------------
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--------------------------S-----S--SSS-S-SSSSSSSSSSSSSSSS-----------S-SSSSS-S-SS
------------------------------------------------------------------------S-SS-SSS
SSSS--------S-------------------------------------------------------------------
-------------S--------S---------------------S-----S-----------------------------
-----------------------------------S---------S------S----S-------------S--------
--------------------SS-----------------------S-----S-S------
>forward_610
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------------------------------GCAGAGGCTGGGTAATCCTC------------------------------
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>reverse_1490
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-------------------------------------------------TCCTTCTTCCCCTGCATTGT-----------
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>forward_682
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----------------------CTGAACGCCTGCGGATAAAC--------------------------------------
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>reverse_2837
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------------------------------------CTCCTCCCATCGCCTCTACT------------------------
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