>input_sequence_62860
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ATGGCAGACCCAGTGAAGCTCATGGGAGGCTTTGGCAGCCCATTCGTCCACCGTGCCGAGGTCGCCTTGCGTCTCAAAGG
AGTGCCCTACGAGCTCATCCTAGAGGACATGATCAACAAGAGCGAGCTGTTGCTGAAGCACAATCCCGTCCACAAGAAGG
TCCCCGTCCTCCTTCACGGGGACAAGGCTGTCTGCGAGTCTCTCCTCATTGTCGAGTACGTCGACGAGGCCTTTGAAGGG
CCACCCATCTTGCCGTCTGACCCTCATGAAAGGTCCGATGCCCGCTTCTGGTCCAAATTCTTTGTGGAAAAGGTATTCAT
GTATAGAGATAGTTCTTAGCATTCAAATCAA--------------------------TTCTGCTAGGTAGGATACTCCTC
CGCTCATAAATA--------------------------------------------------------------------
-------------TATATCATACATAT------TGTGTTGAGCGTTCAATTGGTCTCAATCATAGAATATATATA-----
--TTACTAATACATATTATGACTTATCATTACAGCCTAAAGATAGTATTTTTTTTGCGGGGTCTAAAGATAGTATTTTCA
GCTTACCGATATGAATGTATTTGTTCATATTTCAATAGTTAAAGTAAGACAAGACGACATATATTT-ATATTTGTAACTC
AATTGAAATACTTGCTGACAATTTTCTTCATTTAGTGCTTGATGTCGCTGTGGCTAGCGCTGTGGACGGAGG---GCGAG
GAGCAGAAGGTCTTTATTATGGACGCAAAAGAGAACCTCGCGCTAGTGGAGGCACAACTCAAAGATAAGAGGTTCTTTGG
AGGCGCCAGAATTGGCCTCGCCGATATCGCCGGTGCCAGCCTACTGTCTCGATGGGCAAGCGTGATGCAAGAGGTCGCCG
GGGTGAGCGTGATGACCGACGATGAGTATCCTGCTATCCACCGGTGGATGGAGGACTACAACGCTGACGAAGCTGTCAAG
GAGTGCTTGCCGAACAGAAACCATCTCATCTCCTACTTCACCACGATCAGGGGAAAGTGCGTCTTAGCGGCCAAGTCCAT
GCTACCCAATTATCTAGCCAAGAAATAG----------------------------------------------------
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>chr3B_1_TraesCS3B01G538800
TCCTTCTTTCTGATTAACTTCGGCTCCTACTCCTAATTTCTAATTAGAGACCAGGAGAGTTAGACGGTTCTTCTAATTGC
CAAACATTTACGCGTAACCTCCAATTTATATCTGCTGTGTTATCAGTTTAATTTTGTTTTATCCGTGTTTTGTATCTTGT
TTTTCAATAATACTGATTTTAGTCATCATCAGGAAACATCATTCTAGTAAGACATTATATCATATACATTATAATTGATT
C-TTTTAGGGTTATATACATTATAATTGCTCGTTAGTTTTTTC-CTAGTAAAATAGGGCCTAAG----TTTTTAGTTTCG
CACATAGCCCCAGATTTTGCAGGCCCAGCCCTGGTCGCCATATGTTATGTTCTCCACCTGCAGGGAGATGTTTC------
-----------------------GGTCTCACTCTCGAGTCGTCGGTGCTAGAAAAATGGTTATGAGCTGTGGACTGCATG
GTCGACATGCTGGCAATGCTCCTTGCTCCAGTTTCATCCATGCTCTGCTTTGCTCCTTGATCTGCTTTCTAATCGAGGAT
GGTGTCATTGTTTCTCCTTGCTCTGTTTTTTCTTTATCAGCTTCGCCATCAAGATATTTTT--TTTGGACTTGCCATCAA
GAAACTTTGATTATGGAAACATACAGAACACATCGACACACAAGTCAAACAAAGTCACTGTCCTTCTAGATTATAGTCTA
TTTTTAATTTGCTCACTGTGTTCTATACTATATTATTGGCTAGCTGCTTAAATAAATCTCTCTGATTGCAGCTGCATCAA
TCCTAGTGAGCATCCTCTACCTGTCAAGTAGCATTTTAATTACAGCTTCCCTCGCCACCAAGCTTCTCCTTTTGACCATA
CCAATTGATAAGACCAAATGACACTAGATAAACAAGAATAAG-AAAAGGGCCAGACCATTCTTGGAGAAGAAGCAGCGAC
ACCATTTGGACCAACTCGTCTTTATCAATGTCTTATAAATATC--TGTCCTAGCAAGTGTATCTGATATATCAGTCGATA
ATGGCAGACCCAGTGAAGCTCATGGGAGGCTTTGGCAGCCCATTCGTCCACCGTGCCGAGGTCGCCTTGCGTCTCAAAGG
AGTGCCCTACGAGCTCATCCTAGAGGACATGATCAACAAGAGCGAGCTGTTGCTGAAGCACAATCCCGTCCACAAGAAGG
TCCCCGTCCTCCTTCACGGGGACAAGGCTGTCTGCGAGTCTCTCCTCATTGTCGAGTACGTCGACGAGGCCTTTGAAGGG
CCACCCATCTTGCCGTCTGACCCTCATGAAAGGTCCGATGCCCGCTTCTGGTCCAAATTCTTTGTGGAAAAGGTATTCAT
GTATAGAGATAGTTCTTAGCATTCAAATCAA--------------------------TTCTGCTAGGTAGGATACTCCTC
CGCTCATAAATA--------------------------------------------------------------------
-------------TATATCATACATAT------TGTGTTGAGCGTTCAATTGGTCTCAATCATAGAATATATATA-----
--TTACTAATACATATTATGACTTATCATTACAGCCTAAAGATAGTATTTTTTTTGCGGGGTCTAAAGATAGTATTTTCA
GCTTACCGATATGAATGTATTTGTTCATATTTCAATAGTTAAAGTAAGACAAGACGACATATATTT-ATATTTGTAACTC
AATTGAAATACTTGCTGACAATTTTCTTCATTTAGTGCTTGATGTCGCTGTGGCTAGCGCTGTGGACGGAGG---GCGAG
GAGCAGAAGGTCTTTATTATGGACGCAAAAGAGAACCTCGCGCTAGTGGAGGCACAACTCAAAGATAAGAGGTTCTTTGG
AGGCGCCAGAATTGGCCTCGCCGATATCGCCGGTGCCAGCCTACTGTCTCGATGGGCAAGCGTGATGCAAGAGGTCGCCG
GGGTGAGCGTGATGACCGACGATGAGTATCCTGCTATCCACCGGTGGATGGAGGACTACAACGCTGACGAAGCTGTCAAG
GAGTGCTTGCCGAACAGAAACCATCTCATCTCCTACTTCACCACGATCAGGGGAAAGTGCGTCTTAGCGGCCAAGTCCAT
GCTACCCAATTATCTAGCCAAGAAATAGTCTAATCTGGTAGGTTTTGTCATGCTTGTGGCTTGAATCAACATGAAGATAA
G---------------GGGGAGCTGCTGGCAAGTTGTTGTTCCATGTCACTGTGCTTAGAGTTGATTTGGTTGTAGTTTG
TAGGGAGTCCCAAGTGCAAGTCCAACCTCGACTAGCAAACGGGCCGTAATTGTAGTTGTCCTAGTTGCAAATCAACATTC
AACTTCAACTCGCAACTAGGCCGCAGCTATGTTTTTGTCCTCCTGGTTGCAACTTTAACCCCCAACTCGTCCAACTTCGT
CCTAGTTTGTTTTTGTTGTCCCAGTCGTAGCTCAAAAAGGGGTGTGGGTTAATGTTGTACATGAT--GTGTCTAAAATGA
CACCTGGTTTGTCAAAATGAAGATAACATGTTCTCTGAATTTTCTTCACTAAACAGAAGGTGGAGAGAGCGTTCAGTTAT
AGAGGTTTTGAAACAGGTCCCTATGTTATGGTTTTGACACGGGGAGTTTTTTAGGGAGCTAGTTTTTATGCAGTTACTTT
TTAGCGTTTCCGTAACTTTTTTTTGGGTAATCTCTAATTGGACCAGTGATATGTTTTTACCGCAGTAGCATCGAGTGGGG
GTTTGATTGGTTTGACCCATGTACTATGGTGGTCTGTTTCCCTCAAACAGATAGCTAGTCTCTTTGTAGATAATATTATT
ACCTTTTTGTTAAAACCATACTGGTCTTGGTGGGCTAGCACGGGTTATGTCTTACACAATTCCTTTTTCTATTTTTCTAA
AGGGCTTGTACAGGCCATGCATGTCTTGTGCTGTTTTCATTTATATTGAGATTATTTTTATAATATTGGTGCAAAAACAA
CTATCTAAACTCCATTTCTTTTTCTTCGTGGTTAGTGGGTGCCGCACAAAACACACATCTTTTGGCGCACAAGGGTGTCA
ACAGGGATATCAAGCATAGCGAATCAGATATCGTTAGTATTGATGAAGGCAGAGAGCATTTTTTGTTCAAGATGTTTGAG
TCTGA
>chr3B_6
-----CTTTCTGATTAACTTCGGCTCCTACTCCTAATTTCTAATTAGAGATCAGGAGAGTTAGATGGTTCGTCTAATTGC
CAAACATTCATGCGTAACCTCCAATTGATATCTGCTGTGTTATCAGTTTAGTTTTCTTTTATCCGTGTTTTGTATCTTGT
GTTTCAATAATACTGATTTTAGTCATCACGAGGAAACATCATTCTAGTAAGACATTGTATCATATACATTATAATTGACT
TTTTTTACGGTTATATACATTATAATTGCTCGTTAGTTTTTTTTCTTGTAAAATAGGGCCTCATCCATTTTTTAGTTTCG
CACAGGGCATCAGATTTTGCCGGCCCAGCCCTGGTCGCCATACACTATCTTCTCCACCTGCAGGGAGAGATGTTTCGGTG
AATCAGAAGTGACCCTCTTATGAGGTCTCACTCTCGAGTCGTCGGTGCTAAAAAAATGGTTATGAGCCATGGACTGTATG
GTCGACATGCTGGCAATGCTCCTTGCTCCAGTTTCATCCATGCTCTGCTTTGCTCCTTGCTCTGCTTTCTACTCAAGGAT
GGTGTCAATGTTTCTCCTTGCTCTG-TTTTTCTTTATCAGCTTCGCCATCAAGATTTTTTTTTTTTGGACTTGCCATCAA
GAAACTTTGATTATGGAAACATATAGAACATATCGATACACAAGTCAAACAAAGTCACTGTCCTTCTAGATTATAAT---
---------------CTGTGTTCTATACTATATTATCGGCTAGCTGCTTAAATAAATCTCTCTGATTGCGTCTGCATCAA
TCTTAGTGAGCATCCTCTACCTGTCAATTAGCATTTTAATTACAGCTTCCCTCGCCACCAAGCTTCTCCTTTTGACCATA
GCAATTGATAAGAACAAATGACACTAGAAAAATGAGAGTTAATAAAAGAGCCCGACCATTCTTGGAGAAGAAGCAACAAC
ACCATTTGGACCAACTCGTATTTATCAATGTCTTATAAATATCTATGTCCTAGCAAGTGATTCTGATATACCAGCCAATA
ATGGTGGAACCAGTGAAGCTCATTGGAGGCTTTGGCAGCCCGTTCGTCCACCGCGCCGAGGTCGCCTTGCGTCTCAAAGG
AGTTCCCTACGAGCTCATCCTAGAGGACATGACTAACAAGAGCGAGCTGTTGCTGAAGCACAATCCCGTCCACAAGAAGG
TCCCTGTGCTCCTCCACGGGGACAAGGCTGTCTGCGAGTCTCTCCTCATTGTCGAGTACGTCGACGAGGCCTTTGACGGG
CCACCTATCCTGCCGACTGACCCTCATGAAAGGTCTGAGGCCCGCTTCTGGTCCAAATTCTTTGTGGAAAAGGTATTCAT
GTATAGAGATAGTTCTTAGAATTCAAATCAA--------------------------TTCTGCTAGGTAGGATACTCCTC
AGCTCATAAATACTCCCTCCGTACCAAAATATAAGACGTTTTCCCAGTTCAAATCAAGATGTAAAAATGTCTTATATTTT
AGTACAGAGGTAGTATATCATACATAT------TGTGTTGAAAGTTGAATTGGTCTCATCCATAGAATATACTATATTAA
TAATACG------TATTGTGATTTATCATTACAACCTAAAGATAGTTTTTTTTGC---GGGTCTAAAGATAGTATTTTCA
GCTTACCAATATGAATATATTTGTTCACATTTCAATAGTTAAAGTAAGACAAGACGACATATATTT-ATATTTGTAACCC
AATTGAAATACTTGCTGACAATTTTCTTCATTTAGTGCTTGTTGTCCCTGTGGCTAGCGCTGTGGACGGAGG---GCGAG
GAGCAGAAGGTCTTTATTATGGACGCAAAAGAGAACCTCACGCTAGTGGAGGCACAACTCAAAGAGAAGAGGTTCTTTGG
AGGCGCCACAATTGGCCTCGCCGACATCGCCGGTGCCAGCCTACTGTCTCGCTGGGCAAGCGTGATGCAAGAGGTCGCTG
GGGTGAGGGTGATGACGGACGATGAGTATCCTGCTATCCACCGGTGGATCGAGGACTACAACGCCGACGAAGCTGTCAAG
GAGTGCTTGCCGGACAGAAACCATCTCATCTCCTACTTCACCATGATCAGGGGAAAGTGTATCTCCGCGGCCAAGTCCAT
GCTACCCAATTATCTAGCCAAGAAATAGTCTAATCTGGTAGGTTTTGTCATGCTTGTGGCTTGAATCAACATGAAGAT--
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>chr3B_724
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----------------------------------------TAGCTGGTTAAATAAATCTCTCTCACTGCAGCTGCATCAA
TCTTAGTGAGCATCCTCTGCCTTTCAATTAGCATTTTAATTAGAGCTTCCCTCGCCACCAAGCTTGTCCTTTTGACTGTA
GCAACTGATAAGATAAAATG--ACTAGAAAAATGAGAATTAAGAGAAGGGCCCGGCCATTCTTGGAGAAGAAGCAACGAC
ACCATTTGGACCAACTCGTCTTTATCAGTGTCTTATAAATATCTATGTCCTAGCAAGCGTATCTGATATATCAGCCAATA
ATGGTGGAACCAGTGAAGCTCATTGGAGGCTTTGGCAGCCCGTTCGTCCACCGCGCCGAGGTCGCCTTGCGTCTCAAAGG
AGTGCCCTACGAGCTCATCCTAGAGGACATGACTAACAAGAGCGAGCTGTTGCTGAAGCACAATCCCGTCCACAAGAAGG
TCCCTGTGCTCCTCCACGGGGACAAGGCTGTCTGCGAGTCTCTCCTCATTGTCGAGTACGTCGACGAGGCCTTTGACGGG
CCACCCATCCTGCCGACTGACCCTCATGAAAGGTCTGAGGCCCGCTTCTGGTCCAAATTCTTTGTGGAAAAGGTAATCAT
GTGTAGAGATAGTTCTTACAATTCAAATCAGCTCTACCACCATTGAAGAAAAAACAGTTCTGCTAGGTAGGATACTCCTC
CGCTCATATATACTCCCTCCGTAGCAAAATATAAGACATTTTTGCAGTTCAAATTAAGATGTAAAAACGTCTTATATTTT
GGTACAAAGGAAGTAAATCATACATAT------TGTGTTGGACATTGAATTGATCTCAACCGTAGAATATATATCAC---
TAATGCG------TATTATAATTTTTCATTACAACCTAAAGATAATAATTTTTTGCCGG--TCTAAAGATATTATTATCA
GCTTACCAATATGAATATATTT-TTCATATTTCAATAGTTAAAGTAAGACAAGGCGACATATATTT-ATATTTGTAACCC
AATTGAAATACTTTCTAACAACTTTCTTCATTTAGTGCTTGATGTCGTTGTGGCTAGCGCTGTGGACGGAGG---GTGAG
GAGCAGAAGGTCTTTGTTATGGACGCAAAAGAGAACCTCGTGGTAGTGGAGGCGCAGCTCAACGAGAAGAGGTTCTTCGG
AGGCGCCACAATTGGCCTCGCCGACATCGCCGGTGCCAGCCTACTGTCTCTCTGGGCAAGCGTGATGCAAGAGGTCGCAG
GGGTGAGCGTGATGACAGACGATGAGTATCCTGCTATCCACCGGTGGATCGAGGACTACAACGCTGATGAAGCTGTCAAG
GAGTGCTTGCCGGACAGAAACCATCTCATCTCCTACTTCACCACGATCAGGGGAAAGTGTGTCTCCGCGGCCAAGTCCAT
GCTACCCAATTATCTAGCCAAGAAATAGTCTAATCTGGTAGGTTTGGTCATGCTTGTGGCCTGAATCAACATGAAGATAA
GTAAAAAAATGATAAGGGGGAGCTGCTGGCAAGTTATTGTTCCATGTCACTGTGCTTAGAGTTGATTTGGTTGTAGTTTG
TAGGGAGTCCCAAGTGCAAGTCCAACCTCGACTAGCAGACGGC----------------CCTAGTTGCAAATCAACGTTC
AACTTCAACTCGCAACTAGGCCGCAGCTATGTTTTTGTCCTCTTGGTTGCAACTTTAACCCCCAACTCATCCAACTTCGT
CCCAGTTTGTTTTTGTTGTCCCAGTCGTAGCTCAACAAGGGGTGTGCGGTAATGTTGTACATGATGTGTGTCTAAAATGA
CACCTAGTTTGTCAAAATGAAGATAACATGTTCTCTGAATTTTCTTCACTAAACAGAAGGTGGAGAGCA--TTCTGTTAT
AGAGGTTATGAAACAGGTCCCTATGTTATGGTTTTGACACAGGGAGTTTTTCAGGGAGCTAGTTTTTATGCAGTTACTTT
TTAGCGTTTCCGTAACTT-ATTTTGGGTAGTCTCTAATTGGACCAGTGATATGTTTTTACCGCAGTAGCATCAAGTGGGG
GTTTGATTGGTTTGACCCATGTACTATGGTGGTCTGTTTCCAGCAAACAGATAGCTAGTCTCTTTGTAGATAATATTATT
ACCTTTTTGTTAAAACCATAGTGGTCTTGGTGGGCTAGCAAGGGTTATGTCTTACACAATTCCTTCTTCTATTTTTCTAA
GGGGCTTGTACAGGCCATGCATGTCTTGTGCTGTTTTCATTTTTATTGCGATTATTTTCTTAATATTGGTGCAAAAACAG
CTATCTAAACTCCTTTTCTTTTTCTTCGTGGTTAGTGAGTGCTGCACAAAACACACATCTTTTGGCGCACAAGGGTGTCA
ACAGGGATATCAAGCATAGAGAATCAGATATTGTTAGTATTGATGAAGGCAGAGAGCATTTTTTGTTCTAGATGTTTGAG
TC---
>chr3B_914
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-----------------------------------------------------------------------AGCAACGAC
ACCATTTGGACCAACTCGTCTTTATCAGTGTCTTATAAATATCTATGTCCTAGCAAGTGTATCTGATATATCAGCCAATA
ATGGTGGAACCAGTGAAGCTCATCGGAGGCTTTGGCAGCCCGTTCGTCCACCGAGCCGAGGTCGCCTTGCGTCTCAAAGG
AGTGCCCTACGAGCTCATCCTAGAGGACATGACTAACAAGAGCGAGCTGTTGCTGAAGCACAATCCCGTCCACAAGAAGG
TCCATGTGCTCCTCCACGGGGACAAGGCTGTCTGCGAGTCTCTCCTCATTGTCGAGTACGTCGACGAGGCCTTTGACGGG
CCACCCATCCTGTCGACTGACCCTCATGAAAGGTCTGAGGCCCGCTTCTGGTCCAAATTCTTTGTGGGAAAGGTAATCAT
GTGTAGAGATAGTTCTTACAATTCAAAT--------------------------CAGTTCTGCTAGGTAGGATACTCCTC
CGCTCATACATA--------------------------------------------------------------------
-------------TATGGTACATGTTGTGTTCATGTGTTTGATGTTGAACTGTTCTCAACCATACAATATGTGTT-----
--ATACG------TATTATCATTTTTCACTAAAACCTATAGATGATATTTTTAGCCTATCAAATATGTTTC---------
--------------------TT-TTCATATTTCAATAGTTAAAATAAGACAAGACGACATGTATTCAATACTTGTAACCC
AATTGAAATACTTGTATATTCTTCCTC-----TAGTGCTTGATGTTGCTGTAGTTGGCATTGTGGACGGAGGAGGGCGAG
GATCAGAAGGTCTTTGTTATGGACGCAAAAGAGAATCTCGCCCTAGTGGAGGCGCAGCTGAGCCAGAAGAGGTTCTTCGG
AGGCGCCACAATTGGCCTCGCTGACATCGCTGGTGTCAGCCTACTATCCCGCTGGGCAAGCGTGATGCAAGGGGTCGCTG
GGGTGAGCGTGATGACAGACGATGAGTATGCTGCTATCCACCGGTGGATGGAGGACTACAACGCTGACGAAGCTTT-AAG
GAGTGCTTGCCGGACAGAGACCATCTCATCTCCTACTTCACCACGATCAGGGGAAAGTGCGTCTCCGCGGCCAAGTCCAT
GCTACCCAATTATCTAGCCAAGAAATAGTCTAATCTGGTAGGTTTTGTCATGATTGTGGCTTGAATCAACATGAAGATAA
GTTAAAAAGAGATAAGGGGGAGCTGCTGGCAAGTTATTGCTCCATGTCACTGCGCTTAGAGTTGATTTGGTTGTAGTTTG
TAGGGAGTCCCAATTGCAAGTCCAACCTCGACTAGCAAACGGGCCATAATTGTAGTTGTCCTAGTTGCAAATCAACGTTC
AACT--------CAACTAGGCCGCAGCTATTTTTTTGTCCTCCTGGTTGCAACTTTAACCCCCAACTCG-CCAACTTCGT
CCCAGTTTGTTTTTGTTGTCCCAGTCGTAGCTCAACAAGGGTTGTGGGATAAAGTTGTACATGATGTGTGTCTAAAATGA
CACCTAGTTTGTGAAAATGAAGATAACATGTTCTCTGAATTTTCTTCACTAAAC--------------------------
AGAGGTTATGAAACAGGTCCCTAT--TATGGTTTTGACACAGGGAGTTTTTCAGGGAGCTAGTTTTTATGCAGTTACTTT
TTAGCGTTTCCGTAACCT-TTTTTGGGTAATCTGTAATTGGACCAGTGATATGTTTTTACCGCAGTAGCATCAAGTGGGG
GTTTGATTGGTTTGACCCATGTACTATGGTGGTATGTTTCCAGCAAACAGATAGCTAGTCTCTTTGTAGATAATATTATT
ACCTTTTTGTTAAAACCATACTGGTCTTGGTGGGCTAGCACGGGTTATGTCTTACACAATTCCTTTTTTTATTTTTCTAA
GGGGCTTGTACAGGCCATGCATGTCTTGTGCTGTTTTCATTTTTATTGAGAATATTTTCATAATATTGGTGCAAAAACAG
CTATCTAAACTCCATTTCTTTTTCTTCGTGGTTAGTGGGTGCCGCACAAAACACACATCTTTTGGCGCACAAGGGTGTCA
ACAGGGATATCAAGCATAGAGAATCAGATACTGTTAGTATTGATGAAGGCAGAGAGCATTTTTTTT--AAGATGTTTGAG
TC---
>SNPs
SSSSS---------------------------------------------S-------------S-----S---------
--------S-S---------------S-----------------------S----S------------------------
S---------------------------SS--------------------------S---------------------S-
S------S----------------------------------S---S--------------S-S----------------
----SS--SS----------S---------------------SSS---S-------------------SS-S-S------
--------------------------------------------------S----------------SS-------S---
-----------------------------------------------------------S-----------S--S-----
-------S-----------------S-----------------------------S------------------------
-----------------------S------S-----S--------------------------------------S-SSS
SSSSSSSSSSSSSSS---------------------S-------------------------------------------
--S------------------------S----------------------------------------------------
S------------S--------------S---SS-----S-S----------S----------------------S----
--------------------------------------------------------------------------S-S---
----SS--S--------------S-----------------S-----------S--------------------------
--------------------------------SS----------------------------------------------
----S--S-----S--------------------------------------------------------------S---
---------S-----S-------------------S--S-----------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S----S------------S--------------S-----
--S---SSSSSSS--------S-----------S--------------------SS------------------------
-------S--------S-------------------------------------------------------------S-
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-----------------------------------------------------------------S--------------
--------S---------------S--------------------------S--------------------------S-
----------------S---------------------------------------------------------------
------------S---------------------------------------------------SS--------------
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-----------------------------------S--------------------------------------------
---------------------------------------------S------------------------------S---
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--S--------------------------------S------------S-------------------------------
-----S-------------------------------------------------------------SSSS---S-----
-------S--------------------------------S----------S----------------------------
------------------S-----------------------------------------------------S-------
-----------------------------------------SS-------------------------------------
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S-----------------------------------------S---------------S--------------------S
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-------------------S-----------S------------------------------------------------
--SSS
>forward_540
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----------------------------------------TGCTCTGCTTTGCTCCTTGA--------------------
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>reverse_2145
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----------------------------------------------------------------TAGCGGCCAAGTCCAT
GCTA----------------------------------------------------------------------------
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>forward_1205
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------------------------------------------------------------------CGTCCACAAGAAGG
TCCCC---------------------------------------------------------------------------
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>reverse_2793
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------------------------------------------------------------------------GAGTGGGG
GTTTGATTGGTT--------------------------------------------------------------------
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