>input_sequence_62854
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-----------------------------------------ATGCTGAGGCCGATGCTGGCGTGCTGCAAGCTCTACGTC
TCCGAGGGCCGGAGCGCGGCGGCCCTGCGCGCCGTCGAGCAGGCGGCGCGCCGGCACCACCCGGCCGTAGTCCTCGTCAA
CACCTTCGCCGACGACGCCTACAACCGGGTCGGCTACACGCTCGTCTCCCGCCTCCCGGACCCCGTCGCGCCCGCCGCGC
CGCTGCGGCGCGCCGTGTTCGGCATGGTCGAGGCCGCGCTCGGGGCCATCGACCTCGGCGCCCACGCCGGCGCGCACCCG
CGGCTCGGCGCCGTCGACCACGTCTGCTTCCACCCCCTCGCCGGGGCCGCCCTCCGCGACGTCGCAGCGCTCGCCGCCGC
CGTGGCCGCTGACATCGGCGACGGGCTCCGAGGTAAACCAGTCTCCTCCGTCTCTCGTTCTTGTTCCCCTCTGCTTGCCA
CTCCGTGCGGCGTGCTGATGCTCAGATTCGTTTCTTGCGACGACGGTGTCGGTCCGCAGTGCCGACGTACCTCTACGGCG
CGGCGCACCGGGAGGGCCGGAAGCTGGCGGCCATCAGGAGGCAGCTAGGCTACTTCAAGCCCCAGAGCAGCGCCGAGTGG
CACGGGCCGCTCCCGGTCGCGGCCGACACGACGGCGCTGCCAGTCGCGCCCGACGCCGGCCCGGACGCGGCGTCGGCGTC
CAAGGGCGTGCTGGTGCTCGGGGCGACGGCCTGGGTGGACAACTACAACGTCCCGGTGCGCACCGCCGACGTGGAGGCCG
TGCGGCGGGTCGCGCGCCGGGTCAGCGAGCGCGGCGGCGGGCTCCGGTCCGTGCAGGCGATGGGGCTCGCGCACGGCGAC
GGCGGCGCCGAGGTCGCGTGCAACCTGCTCGACCTCGGGAGCGTGGGCGCCGAGGAGGTGCAGGGCATGGTGGAGCGGCT
CGCGGGTGAGGAAGGGCTCGCCGTCGGCGAGGGGTACTTCACGGATTTCTCCCAGGAGAAGATCGTCGAGCTCTACATGG
AGAAATCAGCTCAGGCTGAGGCTTAA------------------------------------------------------
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>chr7A_1_TraesCS7A01G051100
TGCAGGAATTTGACGCAGAAACAGCGCATGCTTCTTGAGGAGTTCGAGAAGGAAGAGAAGGGCGAGGACGACAAGGATGC
GGAAAAGGCTGCTGGTGCATCAGGATAGCCGGTCTTAGGAGCCAAGCCGCCCAGCATTTCATGGGCGGTTTAGCTCATCA
CACACCACAAGATAGAGTAGGATGCTGCCTGGAATTCA-CAGGTTTAAGTTATATAGTTAGGTTGCATGGAATTCGCATG
GCAACACATAGATCTTGGTTTCGAGTTATTGTAGCTGGGA-AATAATGCTACACCCTGCTGCCTGGCACGTATTCTTCTC
CCAAGAGTGAG------GCATGACGGTTGGCGGCATCTTGTATTGTATAATTGAT----CTTGTTATGTTTTAGAGACAC
ACTGAACACACGGTGCCACTGTCTTATTCATGTCGCTGGTCAGAAGATTTTGTCATTGGGAACAATTTTGCTAGCTCTGT
TTTCACTGTTTTTGAGAGTTTTGATTTAGGACAGTGTTTGCTGGGCCGAACGCAAATGCTGGTGTTCGGCCTTATGGTTC
TGTTCTTCTGGAACTTGCTTGGTCTTCTGTAAAATCATTTTTTGTTGGCTGCATTTTCATGGATAAG-------------
--------ATGTCATGTGTAATTCAAAGTTTTGCCAATTTGCAGTAGTAATTGTGCCTTTTCATATTGCAATTGAGCAAT
GTTGAGATGAGCAACATTGTTTCAAAAATAAAAATTTTTGTTGAGATGAGCAACATGAACAGGCCTTGTTGTTGCAATCG
TTGTAATGGCTGCATTCTCATGGATATTAATGCTCCTGACTGCACTTTCTTGTAATTCAGCGA-----------------
----GAGCAATTTTGAGAA--------------------------CCTATTCTGTGGCTGGGACGATGGACGCTTGTTCA
CCTCTCTCGCTGCCCAACTCTGTCCACAGCCTCATCTTCTCCTCCTTGTACGAGAATAATTTTGGTTTCCTTTTTGGTTG
GTGGTTGCATCT-GGATGCGGCGGCCGCGTAGAGGAGGAGGATGCTGAGGCCGATGCTGGCGTGCTGCAAGCTCTACGTC
TCCGAGGGCCGGAGCGCGGCGGCCCTGCGCGCCGTCGAGCAGGCGGCGCGCCGGCACCACCCGGCCGTAGTCCTCGTCAA
CACCTTCGCCGACGACGCCTACAACCGGGTCGGCTACACGCTCGTCTCCCGCCTCCCGGACCCCGTCGCGCCCGCCGCGC
CGCTGCGGCGCGCCGTGTTCGGCATGGTCGAGGCCGCGCTCGGGGCCATCGACCTCGGCGCCCACGCCGGCGCGCACCCG
CGGCTCGGCGCCGTCGACCACGTCTGCTTCCACCCCCTCGCCGGGGCCGCCCTCCGCGACGTCGCAGCGCTCGCCGCCGC
CGTGGCCGCTGACATCGGCGACGGGCTCCGAGGTAAACCAGTCTCCTCCGTCTCTCGTTCTTGTTCCCCTCTGCTTGCCA
CTCCGTGCGGCGTGCTGATGCTCAGATTCGTTTCTTGCGACGACGGTGTCGGTCCGCAGTGCCGACGTACCTCTACGGCG
CGGCGCACCGGGAGGGCCGGAAGCTGGCGGCCATCAGGAGGCAGCTAGGCTACTTCAAGCCCCAGAGCAGCGCCGAGTGG
CACGGGCCGCTCCCGGTCGCGGCCGACACGACGGCGCTGCCAGTCGCGCCCGACGCCGGCCCGGACGCGGCGTCGGCGTC
CAAGGGCGTGCTGGTGCTCGGGGCGACGGCCTGGGTGGACAACTACAACGTCCCGGTGCGCACCGCCGACGTGGAGGCCG
TGCGGCGGGTCGCGCGCCGGGTCAGCGAGCGCGGCGGCGGGCTCCGGTCCGTGCAGGCGATGGGGCTCGCGCACGGCGAC
GGCGGCGCCGAGGTCGCGTGCAACCTGCTCGACCTCGGGAGCGTGGGCGCCGAGGAGGTGCAGGGCATGGTGGAGCGGCT
CGCGGGTGAGGAAGGGCTCGCCGTCGGCGAGGGGTACTTCACGGATTTCTCCCAGGAGAAGATCGTCGAGCTCTACATGG
AGAAATCAGCTCAGGCTGAGGCTTAATTTAATCTCAAGGTCAAGTGAAATCGGC-------------------TCTTGTT
TGTTGAAATATAATCCTAACCGATCAAGAATGAGTACTTAACATTGTTCATGTGAAGCAAATGCATTGTACTCTATGCAT
TTTCCACA-GAGTTTGTCTTCTCCATGCCCCGTCTTGACGCCGAGCATTTTGTGGCACGCTATATTTTCAACCGCAACCC
GCCAATAAACCGCTGTCGAGGCCTGTTGCTGCCCAACTCGTCCTCAACGGCATCTCCGACCCACTGTCGACGCCATGACA
CCCATCACGCCCGTTGATCTTGTAAGGGCATGTACGACGGCATCTAGTCAGCCTTCTGTAATACAAGCCACATAGGAAAA
GAAGCAATAATGATAAACATAATTACACGCTGATTAGGACTTTCTTCATGTACTAACCAATCATAAACTTGCCTCCCTTC
TGATTTTCAGGGGGATGAGCCGCATCCTCACCTATTGACCAATCAAATTAACCCTCTTTGTAAAAACTTGTAACTCGTTT
GTACGTGTAGCATTACTCAAAAATAAATGATGTGGGGGAGAGAGAAAGGGAGAAACGCTGGAGCCTGTCTGTAGAATTAT
TGACGGTCCACTCCCAAGTAAATCGCTGCTTATACACGAGGAAAGTATCATTTCCCCCCTCAAATCCTTTATGATGGATC
AAATCCCCCCTCAAGTCTAAAACCGGATTAATCACCCCCTCAAATCTGTAATACCGGATCAATCAGGCCCCGAGCGGTTT
TGAACAAGATTTTAGGTGGTTTTGATAGGAACTGCAAGATTTCTAACTTGTCGGCGTCGCCGACGACGTGGAAATTTTCT
AGGATCTCGGCACCGGCGACGTGCTCCCCCGGCCGACCCCTTATTCTAGGGGAATCTGGCTCAGAAGGATCGCTGACGCG
GACTTTGGCTCGACGCACATGTTCGGGAGGCGAGCTCCCCGAGGAGGAAGACAGCCATATGCAAAACCTGCGCGCTGACA
GAGTTG
>chr4A_1
TGCAGGAATTTGACACAGAAACAGCGCATGCTTCTCGAGGAGTTCGAGAAGGAAGAGAAGGGCGAGGACGACAAGGACGC
GGAAAAGGCAGCTGGCGCATCAGGATAGACGGTCTTAGGAGCCAAGCCGCCCAGCATTTCATGGGCGTTTTAGCTCATCA
CACACCACAAGATAGAGTAGGATGCTGCCTGGAATTCA-CAGGTTTAAGTTACATAGTTAGGTTGCATGGGATTCGCATC
GCAACAAATAGATCCTGGTTTCGAGTTTTTGTAGCTGGAATAATAAAGCTACA-CCTGCCACCTGGCATGTACTATTATT
GTCGTAAGAGTGTTG----ATGACGGTCGGGGGCATCTTGTATTGTATAATTGAT----CTTGTTATGTGTTAGAGACAT
ACTGAACACACGGTGCCACTGTC-TATTCATGTCAGCTGGTCGAAGA-TTTGGCATTGTAAACAATTTTTCTCGCTGTGC
TTTCATTGGGTTTGAGAGTTTGGATTT-GGACAGTTTTTGCTGGGCAGAACGCAAATGCTGGTGTTCGGCCTTATGGTTC
TCTTCTTTTGGAACTTGCTTAGTCTTCTGTAAGATCAATATATTCTGACTT-ATTTTCATGGATATTGATGCGCCACAAG
GATAAGATATGTCATATGTAATTCAAAGTTTTGCCAATTTGCAGTAGCAACTGTGCCTTTTTATATTCCAATTGAGCAAT
GTTGAGAT---------------------------------------GAGCAACATGAACAGGCCTTGCTGTTGCAATCA
TTGCAATCTCATA---------GATATTGATGCTCGTAACCGGAGGTTCTTGTAATTCAGCG-------------AGAAC
ATTTGAGCAATTTTGAGAACAAGTGAACCAAA---GGATGAAGAACCTATTCTGTGGCTGGGACGATGGACGCTTGTTCA
CCTCCCTCGCTGCCCAACTCTGTCCACAGCCTCATCTTCTCCT---TGTACGAGAATAATTTTCGTTTCCTTTTTGGTTG
GTGGTTGCATCT-GGATGCGTA------------GAGGAGGATGCTGAGGCCGATGCTGGCGTGCTGCAAGCTCTACGTC
TCCGAGGGCCGGAGCGCGGCGGCCCTGCGCGCCGTCGAGCAGGCGGCGCGCCGGCACCACCCGGCCGTCGCCCTCGTCAA
CACCTTCGTCGACGACGCCTACAACCGGGTCGGCTACACGCTCGTCTCCCGCCTCCCGGACCCCGTCGCGCCGGCCGCGC
CGCTGCGGCGCGCCGTGTTCGGCATGGTCGAGGCCGCGCTCGGGGCCATCGACCTCGGCGCCCACGCCGGCGCGCACCCG
CGGCTCGGCGCCGTCGACCACGTCTGCTTCCACCCCCTCGCCGGGTCCCCCCTCCGTGACGTCGCCGCGCTCGCCGCCGC
CGTGGCCGCCGACATCGGCGACGGGCTCCGAGGTAAACCAGTCTCCTCCGTCTCTCGTTCTTGTTCCCCTCTACTTGCCA
CTCCGTGCGGCGTGCTGACGCTCAGATTCGTTTCGTGCGACGGCGGCGTCGGTCCGCAGTGCCGACGTACCTCTACGGCG
CGGCGCACCGGGAGGGCCGGACGCTGGCGGCCATCAGGAGGCAGCTCGGCTACTTCAAGCCCCAGAGCAGCGCCGAGTGG
CACGGGCCGCTCACCGTGACGGCCGACGCGACGGCGCTCCCCGTCGCGCCCGACGCCGGCCCGGACGCGGCGTCGGCGTC
CAAGGGCGTGCTGGTCCTCGGGGCGACGGCGTGGGTGGACAACTACAACGTGCCGGTGCGCACCGCCGACGTGGAGGCCG
TGCGGCGGGTCGCGCGCCGGGTCAGCGAGCGCGGCGGCGGGCTCCGGTCCGTGCAGGCCATGGGGCTCGCGCACGGCGAC
GGCGGCGCCGAGGTCGCGTGTAACCTGCTCGACCCGGGGAGCGTGGGCGCCGAGGAGGTGCAGGGCATGGTGGAGCGGCT
CGCGGGTGAGGAAGGCCTCGCCGTCGGCGAGGGGTACTTCACGGATTTCTCCCAGGAGAAGATCGTCGAGCTGTACATGG
AGAAGTCGGCTCAGGCCGAGGCTTGATTTTATCTC---------------------------------------------
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>chr7D_1
TGCAGGAATTTGACGCAGAAACAGCGCATGCTTCTCGAGGAGTTCGAGAAGGAAGAGAAGGGCGAGGACGACAAGGACGC
GGAAAAGGCAGCTGGCGCATCAGGATAGCCGGTCTTAGGAGCCAAGCCGCCCAGCATTTCATGGGCGGTTTAGCTCATCA
CACACCACAAGATAGAGTAGGATGCTGCCTGGAAATTTGCAGGTTTAAGTTATATAGTTAGGTTGCATGGAATTCGCATG
GCAACACATAGATCTTGGTTTCGAGTTATTGTAGCTGGGA-AATAATGCTACACCCTGCCGCCTGGCACGTATTCTTCTC
CCAAGAGTGAGGCATGAGCATGACGGTTGGCGGCATCTTGTATTGTATAATTGATTGATCTTGTTATGTTTTAGAGACAC
ACTGAACACACGGTGCCACTGTC-TATTCATGTCGCTGGTCGGGACACTTCCGCATTCGAAACAATTTTGCTCGTTCTGC
TTTCAGTGGTTTCAAGAGTTTGGATTT-GGACAGTTTTTGGATGTGGTCAT------------------CCTTGTGGTTG
TGTCTTTCTGGAACTTGCATGGTTTTCAGCAAACTC--------------------------------------------
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--------------------------------------------------------------------------CAATAT
TTGTAATGGCTGGATTCTCGTGGATATCGATGTTCCTAACTGGAAGTTTTTGTAATTCATATCGACACGGCACAAAGAAC
ATTTGAGCAATTTTGAGAACCAAGTTCCTCTGAACGGAGGAAGAATCCATTGTGTGGCTGAGACCTTGGACGCTTGGTCT
CTTCTCTCGCTGCCCAATTCTGTCCACAACCTCATCTTCCTCTCCTTGTACGAGAATTTTCTGTT----CTTTTTGGTTG
GTGGTTGCATCTTGGATGCGGCGGCTGCGTATAGGAGCAGGATGCTGAGGCCGATGCTGGCGTGCTGCAAGCTCTACGTC
TCCGAGGGCCGGAGCTCGGCCGTCCTGCGCGCGGTCGAGCAGGCGGCGCGCCGGCACCACCCGGCCGTCGCCCTTGTCAA
CACCTTCGCCGACGACGCCTACAACCGGGTCGGCTACACGCTCGTCTCCCGCCTCCCGCACCCCGTCGCGCCGGCCACGC
CGCTGCGGCGGGCCGTGTTCGGCATGGTCGAGGCCGCGCTCGGGGCCATCGACCTGGGCGCCCACGCCGGCGCGCACCCG
CGGCTCGGCGCCGTCGACCACGTCTGCTTCCACCCCCTCGCCGGGGCCGCCCTCCGCGACGTCGCCGCGCTCGCCGCCGC
CGTGGCTGCCGACATCGGCGACGGGCTCCAAGGTAAACCAGTCTCCTCTGTTTCTTGTTCTTGTCCCCCTTTGCTTGCCA
CTCCGTGCGGCGTGCTGACGTTCAGACC-----CGTGCGGCGACGGGGTCGGTTGGCAGTGCCGACGTACCTCTACGGCG
CGGCGCACCGGGAGGGCCGGACGCTGGCGGCCATCAGGAGGCAGCTGGGCTACTTCAGGCCTCAGAGCAACGCCGAGTGG
CACGGGCCGCTCCCCGTCACGGCCGAGGCGACGACGCTCCCCGTCGCGCCCGACGCCGGCCCGGACGCGGCGTCGGCGTC
CAAGGGCGTGTTGGTGCTCGGGGCGACGGCCTGGGTGGACAACTACAACGTGCCGGTGCGCACGGCCGACGTGGAGGCCG
TGCGGCGGGTCGCGCGCCGGGTCAGCGAGCGCGGCGGCGGGCTCCGGTCCGTGCAGGCCATGGGGCTCGCGCACGGCGAC
GGCGGCGCCGAGGTGGCGTGCAACCTGCTCGACCCGGGGAGCGTGGGCGCCGAGGAGGTGCAGGGCATGGTGGAGCGGCT
GGCGGGGGAGGAAGGCCTCGCCGTCGGCGAGGGGTACTTCACGGATTTCTCCCAGGAGAAGATCGTCGAGCTCTACATGG
AGAAGTCAGCTCAGGCTGAGGCTTGATTTCATCTCCCCCTTTTGTTTCTTTTAGCACAGTGGCATTATGGATTTCGTGTT
TGTTGAGATATAACTCTAACCGATCAAGAATAATTAATTAACATTTATCATGTGGAGCAAATGCAGTGCACAATATGCAT
TCTGGAGCGGAGTTTGTCTTCTCCATGTCCCCTCCTGAC-CCGTGCATTTTGTG--------------------------
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>SNPs
-----------------------------------S-----------------------------------------S--
---------S-----S----------------------------------------------------------------
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-----------------------------------------------------------S--------------------
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-----------------------S-----------------S-----S----S------S------------S------S
-----S--S------------S-----S-------S----------S---------------------------------
-------------------------------------S-S-S-SS--S--SS-------------SS-------------
---------------S-------------------------------S--S----------S-----S------------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------S----------S
------------S------S--------S--------S----S-SS----------------S-----------------
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---------------------------------------------------------------S----------------
-------------------------S-----S------------------------------------------------
--------------------------------------------------------------------S-S---------
------------------------------------------------------------------------S-------
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-----------------------------------------------------------------S--------------
---------S----------------------------------------------------------------------
------------------S---------------S-----------S---------------------------------
---------------------S------------------------S---------------------------------
--------------S---S--------S----------S--S--------------------------------------
---------------------------------------------------S----------------------------
----------------------------------------------------------S---------------------
----------------------------------SS--------------------------------------------
---------------S----------------------------------------------------------------
----S-------------------S----S-----SSSS-SSS--SSSS-SSSS---------------------S----
------S------SS----------------S-S--S--------SS-------S----------S--S--SS-------
-S-SS-SS-------------------S---S--S----S---S----------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_90
----------------------------------------------------------------------ACAAGGATGC
GGAAAAGGCT----------------------------------------------------------------------
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>reverse_1189
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--------------------------------------------------------------------AGTCCTCGTCAA
CACCTTCG------------------------------------------------------------------------
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>forward_800
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------------------------------------------------------------AGGCCTTGTTGTTGCAATCG
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>reverse_2427
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--------------------------GGCATGTACGACGGCATCTA----------------------------------
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