>input_sequence_62846
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----------------------------------------------------------ATGGCGATGAAGCGCCGCTCCG
TGCTGGCTTTGCTCGTCGTCGCATTCGTCGGAGGGAACCTGCTCCTCGGGGCCTCGTTTAGCGCCAGAAGCACGGTGAAG
TCCTCAGCCTCAGGTACGTACGCAATGAAAACTGCCTCCGTTTGCTGTTCTCTCTCTTGCTCTCCTGTCAGTT-------
----GTAGTTCAGGTGAATCCTGTTCCGTTTCTTCTGTCCAGTGTTGCT-------------------------------
---------GTGTTGGTGCTTGGTTCGATCTTTGAAAAGATCGTGGATGCGAGGTGGTGAAAGAAACTGCCAGTCCGACA
TGATAAAGC--------------------TATCTTTTTATTTTGGGTCTTCTTTCGCTCTCTTTTTGACGGTTGGGTCCT
CTTCTCTGCAACTGCATGCAACTTGAAGGAAATGTTTGGTAGGAAACTAAGCGAGGTTCCCAAAGTTATCTGCATAGCTC
CAATAGGCTGTTAGATTCCGTTACGTTTGCATGGGTTGGTGCTGGTTTCTTCGGTTCTCACTATGTAGGTTCAGCAGCTA
CTTAGTTTCAGTAGGGAATATATGTCCTATGGCTTGAAATCTGAACTGCAATCAATGCAGACCCGACCTATGGAACCGCT
GAGCTAAACGGCAGGAGACTAAAGGTGTGCATTCT----CAGACAGAACCTGTAAAAGTACACTACATTTCTTCACACAT
CAGCATAATATACAAGCACCACATGTACCCTCTACTTCACATAATTTTCCTAATGAAATTTTGTTTCTGTTCAA-TATAG
CT----TAAACTCTGAAGGAAGAATACCTAAGTCGTGTTCCTTGTATACCTTTTCCAGGAAAGTAGGCATGATGTTACTG
ACAGGAAGACTAGGAACTTACAAGATGTAAAGACTGATGACTACCAACCTATCGACCCAAGTCCAAGCTCCAAGGCAAGT
ATCAGGCCAGCTCCAATCGAGCATGGCACTCCTCTTCTTCCTTATGTGCCACGGTACCCGCCGCCTCCTGCTCAACCGAA
GGATGCGCGTTCTGCTCAGTCCGCCGCCGCTCCTGTCGCTTAG-------------------------------------
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>chr4B_1_TraesCS4B01G256000
TCACCTGAGCGTATTCTGGTTGTCTTTTGCAGCCTTGGAAAAACAATATTTCCCTGCCAGAGAGTAAATGCACGGTGGGG
CAAGCTGGATTGCCCGGATCGCGCGTGCGACCTAGAAGGCTCGAACGACATCGTGCCGAACCGATGACACTGCCCAGAAA
CCTTATAAAATTTCCGCGCCAGTAACAAGTTTAAACCACCATTGGATGGGCAATACCAGGAGGATAAGGAAAGATAATTC
AGGACAATACCGGTGTATTATTATTGTTTACCTCCTCCATCCTCTATCCCTAGCAAATGTAATACTAGTATATGTCATCT
GAACCTGCCCCTTGATGCCGCGTTCCTGTACAGTACAGTTTCGCCATCTTTACGGTGAATCAATGATGATATTATCCTAT
GATCTGTAAAGGTTTT--GGGTGAAGTTGTATCAGTTACACCGATTTAGTGCTCTCTTTGAAGTCTGAACTCTGATGCTT
T---CAACTCCCCTATCTGTCAAACATTACAGGTTTCTGTGCAACCTGTATCACCGAAAACCCTGGAAATGGGGCACGTT
-CTATTCATGAGATTGCATAGGATAATTTGTGGGAAAAAGAGGCGGCAAATGCGTCGATCACTACTGC--TAGTAGTAGT
ATATTCAGAGGCAGCAAGACCTGCAAGAGCTTGGCAGTCAATGACAAAGCAGGCCCGACGGAGGAATGCATGGAGGCCAC
CTTCCTCGCTTTG-CCCGGCCATTTTTCCTGCACCGCCTGCCTCCTCGGTGTTGCCGAGACATAAATTCTGCCGTGTTAT
CGCGCCATTTCTTTAATCCCATGCTGACACCTACGAGTGATGCACATGCGGAGGTTGCATCACCCGTTGCACTGCATGCA
CTGCCTGTCTTTATCTTGCAGCCAGGAGACGGTCTCAAGGAAGCAAACCAGAAGAACCAACGCCGGTGCTGAAGC-----
--TCAAGCGTCTCAGCTTCTCAG--TCTCAGGGGATACTGCAAGCGGTGGAGAGAACGATGGCGATGAAGCGCCGCTCCG
TGCTGGCTTTGCTCGTCGTCGCATTCGTCGGAGGGAACCTGCTCCTCGGGGCCTCGTTTAGCGCCAGAAGCACGGTGAAG
TCCTCAGCCTCAGGTACGTACGCAATGAAAACTGCCTCCGTTTGCTGTTCTCTCTCTTGCTCTCCTGTCAGTT-------
----GTAGTTCAGGTGAATCCTGTTCCGTTTCTTCTGTCCAGTGTTGCT-------------------------------
---------GTGTTGGTGCTTGGTTCGATCTTTGAAAAGATCGTGGATGCGAGGTGGTGAAAGAAACTGCCAGTCCGACA
TGATAAAGC--------------------TATCTTTTTATTTTGGGTCTTCTTTCGCTCTCTTTTTGACGGTTGGGTCCT
CTTCTCTGCAACTGCATGCAACTTGAAGGAAATGTTTGGTAGGAAACTAAGCGAGGTTCCCAAAGTTATCTGCATAGCTC
CAATAGGCTGTTAGATTCCGTTACGTTTGCATGGGTTGGTGCTGGTTTCTTCGGTTCTCACTATGTAGGTTCAGCAGCTA
CTTAGTTTCAGTAGGGAATATATGTCCTATGGCTTGAAATCTGAACTGCAATCAATGCAGACCCGACCTATGGAACCGCT
GAGCTAAACGGCAGGAGACTAAAGGTGTGCATTCT----CAGACAGAACCTGTAAAAGTACACTACATTTCTTCACACAT
CAGCATAATATACAAGCACCACATGTACCCTCTACTTCACATAATTTTCCTAATGAAATTTTGTTTCTGTTCAA-TATAG
CT----TAAACTCTGAAGGAAGAATACCTAAGTCGTGTTCCTTGTATACCTTTTCCAGGAAAGTAGGCATGATGTTACTG
ACAGGAAGACTAGGAACTTACAAGATGTAAAGACTGATGACTACCAACCTATCGACCCAAGTCCAAGCTCCAAGGCAAGT
ATCAGGCCAGCTCCAATCGAGCATGGCACTCCTCTTCTTCCTTATGTGCCACGGTACCCGCCGCCTCCTGCTCAACCGAA
GGATGCGCGTTCTGCTCAGTCCGCCGCCGCTCCTGTCGCTTAGCTGAAAACTGAAATGCTCCAGAGGCGGTACTTGAAAA
ATTAGAGAACCACCATATGTCCAAAGTCTTCTCTGATGTTATGTTATGTGTCGTATGTGTGTTTACACTAAGTACTTGAA
TGGTGCATGTCCTTTGATGTCTCAGTGTTTGGAATCACTTGGTGAGGGACAGTGTTAGCTGTATCTGTGGGTGGTCAATT
AGTCAACTGCTCTAATCTTGAGGGCATGTTTCTAGATTAGAC------CCAGCATTATTCTGGGGCACCTAGGTAAGCTG
CACTACTATTGTCATATGTAAATGTTATTGTTATGTTATA--GAATAACTATGGTATTAGTCAGAACTGCTTACTGAATT
CTTATGTGACCTTGGTGCTTGGTTGAAGCAGTTATCCAATTTTCAGAAAACTATCAGTATTGCAATACCTATTTCCAGTG
TGAATCATTGGGCAGGTGTA-TTCACTAATTTAAGCCTCTTAGAAGGTCCGGTTTGGAACGCGAGAATTTTTCTGGGTTC
CAGATTGAATTATTTCCTGCGAAATTCTTCTTGTCCCAAACATGCCCT-AAAAGTTTATTCATCCACTTCTTCTGTCAGC
CATCTGTAAAGATGGTGGATTTGACAACCTACTGAAAGTGGTATTGTCAAACCGGGTTTCATAATGAAAGAAAGTTGTCA
CTTAATCTCTAAGTGTTTCTCTTATGGGTATTCTCACATTTGAGAATCTTGGAAT-AAGGTTTTCTAAGTATGGTACCCT
CTAGTTATGGTCGGTATGATGAGAAGGATGGCTAGTTAGTCCATGTCATTTCCGAAGACACTTTTCTGAATACAATAGTC
AAAAATATACAAACATGTGCTGGTTACATTTTGCGCAATCACCTACCGTTACCATACCCCTTGTATGTATTCTGTGACAT
CCTATTGAGCACATGCTGATTC-TTTATTCTTGATTTGCCTTAGAAACTAAGGATCATGTGTTAATCAGCAAACAAAGCA
TGCCACCTATCTTTT
>chr4A_1
TCACCTGAGCGTATTGTGGTTGTGTTTTGCAGCCTTGGAAAAACAATATTTCCCTGCCAGAGAGTAAATGCACGGTGGGG
CAAGCTGGATTGCCCGGATCGCGCGTGCGACCTAGGAGGCTCCAACGACATCATGCCGAACCGATGACACTGCCCAGAAA
CCTTATAAAATCTCCGCGCCAGTAACAAATTTGAACCACCATTGGATGGGCAATACCAGGAGGATAAGGGAAGATAATTC
AGGGCAATACCGGTGTATTATTATTGTTTACCTCCTCCATCCTCTATCCCTGGCAAATGTAATACTAGTATATGTCATCC
GAACCTGCCCCTTGATGCTGCGGTCCTGTACAGTACAGTTTCGACATCTTTACGATGATGAAA---------CATCCTAT
GATCTGTAAAGGTTTTGGGGGTGAAGTTGTATCAGTTGCACCGATTTACTGCTCTC--TGAAGTCTGAACTCTGATGCTT
TTTTCAACTCCCCTATCTTTCAAACGTTACAGGTTTCTGTGCACCCTCTATCACCGAAAACCCTGGAAATGGGACACGTT
-CTGTTCATGAGATTGCATAGGATAATTTGTGGGAAAAAGAGGCGGCAAATGCGTGGATCGCTACTGATATAGTAGTAGT
ATATTCAGAGGCAGCAAGACCTGCAAGAGCTTGGCAGTCAATGACAAAGCAGGCCCGGCGGAGGAATGCATGGAGGCCAC
CTTCCTCGCTTTG-CC-GGCCATTTTTCCTGCACCGCCTGCCTCCTCGGTGTTGCCGAGACATAAATTCTGCCGTGTTAT
CGCGCCATTTCTTTAATCCCATGCTGACACCTACGAGCGATGCACATGCGGAGGTTGCATCACCCGTTGCACTGCATGCA
CTGCCTGTCTTTATCTTGCAGCCAGGAGACGGTCTCAAGGAAGCAAACCAGAAGAACCAACGCCGGTGCTGAAGCCTGAA
GCTCAAGCGTCTCACCTTGTGAGCTTCTCAGGGGACCTTGCAAGCGGTGGAGAGAGCGATGGCGATGAAGCGCCGCTCCG
TGCTGGCTTTGCTCGTCGTCGCCTTCGTCGGAGGGAACCTGCTCCTCGGGGCCTCGTTTAGCGCCAGAAGCACGGTGAAG
TCCTCAGCCTCAGGTACGCACGCAATGAAAACTGCCTCTGTTTGCTCTTCTCTCTCTTGCCCTCTTGCCCTCTTGTCACT
TATAGTTGTTCAGGTGAATCCTGTTCCGTTTCCTCTGCCCCGTTTGGTTTAGAGAGAAAAGCGTAGATAGCTTTAGCAGC
TAGTGTCCAGTGTTGGCGCTTGGTTCGATCTTTAAAAAGATTGTGGATGCGAGGTGGTGAAAGAAACTGCCGGTCCGACA
TGATAAAGCAAATCTGATAGTTATTAGTATATCTTTTTACTTTGGGTCTTCTTTCGCTCTCTTTCTGACGAGTGGGTCCT
CTTCTCTGCAACTGCGTACAACTTGAAGGAAATGTTTGGTAGGAAACTAAGCGAGGTTCCCAAAGTTATCTGCATAGCTC
CAATAGACTGTTAGATTCCGTTACGTTTGCATGGGTTGGTGCTGGTTTCTTCAGTTCTCACCATGTAGGTTCAGCAGCTA
CTTAGTTTCAGTAGGGAATATATGGCCTATGGCTTGACATCTTAACTGCAATCAATGCAGACCCGGACTATGGAACTGCT
GAGCTAAACGGCAGGAGACTAAAGGTGTGCATTCTC----AGACATAACCTGTAAAAGTGTTATACAT---TTCACAGAG
CAGCATAATATACAAACACCACATATACCCTCTACTTCACATAATTTTCCTAATGAAAATTTGTTTTTGTTCAG-TATAG
CTTCTATAAACTCCGAAGGAAGATTACCTAAGTCATGTTCCTTGTATACCTTTTCCAGGAAAGTGGACAAGATGTTACTA
ACAGGAAGACTAGGGACTTACAAGATGTAAAGGCTGATGACTACCAACCTATTGACCCAAGTCCAAGCTCGAAGGCAAGT
ATCAGGCCAGCTCCAATCGAGCATGGCACTCCTCTTCTTCCTTATGTGCCACGGTACCCGCCGCCTCCTGGTCAGCCTAA
GGATGCGCATTCTGCTCAGTCTGCTGCCGCTCCTGTCGCTTAGCTGAGAACTGAAATGCTCCAGAGGCGGTACTTGAAAA
ATTAGAGAACCACCTTATGTCCAAAGTCTTCTCTGATGTTATGTTATGTGGCGTATGTGTGTTTACACTAAGTACTTGAA
TGGTGCATGTCCTTTGATGTCTCAGTGTTTGGAATCACTTGGTGATGGACAGTGTTAGCTGTATCTGTGGGTGGTCAATT
AGTCAACTGCTCAAATCTTGACGGCATGTTTCTAGATTAGATAAGGTGCCGGCATTATTCTGGGGCACCCAGGTAAGCTG
CACTACTATTGTCATATGTAAATGTTATTGTTATGTTATATAGCATAACTATGGTATTAGTCAGAACTGTTTACTGAATT
CTTGTGTAACCTTTGTGCTTGGTTGAAGCAATTATCCAATTTTCAGAAAACTATCAGTATTGGAATACCTATTTCCAGTG
TGAATCATTGAGCAGGAGTAATTCACTAATCTAAGCCTCTTAGAAGGTCCGGTTTGGAACGCAAGAAATTTTCTGGGTTC
CAGATTGAACTATTTCCTATGAAATTATG-TTGTCCCAAACATTCCCCCAAAAATTTATTCATCCACTTCTTCCGTCAGC
CACCTGTAAAGATGGTGGATTTGACAACCTACTGAAGGTGGTATTGTCAAACCAGGTTCCACAATTAATAAAAGTTGATA
CTTAAGCTCTAAGTGTTTCTCGTATGGGTATTCTCACATTTGAGAATCATGCAATAAAGGTTTTCTAAGTATGGAACCCT
CTAGTTTTGGTCGGTATGATGAGAAGGATGGCTAGTTAGTCCATGTCATTTCCAAAGACACTTCTCTGAATACAATAGTC
AAAAATATACAAACATGTACTGGTTACATTTTGCACAATCACCTACCTTTACCATACCCCTTGTATGTATTCTGTGACAT
CCTATTGAGCACATGCTGATTCTTTTATTCTTGATTTGCCTTAGAAACTAAGGATCATGTGTTAATCGGCAAACAAAGCA
TGCCACCTATCT---
>chr4D_1
TCACCTGAGCATATTGTGGTTGTGTTTTGCAGCCTTGGAAAAACAATATTTCCCTGCCAGAGAGTAAATGCACGGTGGGG
CAAGCTGGATTGCCCGGATCGTGCGTGCGACCTAGAAGGCTCGAACGACATCATGCCGAACCGATGACACTGCCCAGAAA
CCTTATAAAATCTCCGCGCCAGTAACAAATTTGAACCACTATTGGATGGGCAATACCAGGAGGACAAGGAAAGATAATTC
AGGACAATACCGGTGTATTATTATTGTTTACCTCCTCCATCCTCTATCCCTGTCAAATGTAATACTAGTATATGTCATCT
GAACCTGCCCCTTGATGCCGCGCTCCTGTACAGTACAGTTTCGCCATCTTTACGGTGATGAAA---------TATCCTAT
GATCTGTAAAGGTTTT--GGGTGAAGTTGTATCAGTTACACTGATTTACTGCTTTC--TGAAATCTGAACCCTGATGCTT
TTTTCAACTCCCCTATCTGGCAAACATTACAGGTTTCTGTGCAATCTGTATCACCGAAAACCCTGGAAATGGGACACGTT
TCTGTTCATGAGATTGCATAGGATA-TTTGTGGGAAAAAGAGGCGGCAAATGTGTGGATCGCTACTGATATAGTAGTAGT
ATATTCAGAGGCAACAAGACCTGCAAGAGCTTGGCAGTCAATGACAAAGCAGGCCCGGCGGAGGAATGCATGGAGGCCAC
CTTCCTCGCTTTTTCC-GGCCATTTTTCCTGCACCGCCTGCCTCCTCGGTGTTGCCGAGACATAAATTCTGCCGTGTTAT
CGCGCCATTTCTTTAATCCCATGCTGACACCTACGAGTGATGCACATGCGGAGGTTGCATCACCCGTTGCATTGCATGCA
CTGCCTGTCTTTATCTTACAGCCAGGAGACGGTCTCAAGGAAGCAAACCACAAGAACCAACGCCGGTGCTGAAGT-----
--TGAACCGTCTCACCTTCTGAGCTT----GGAGACCTTGCAAGCGGTGGAGAGGACGATGGCGATGAAGCGCCGCTCCG
TGCTGGCTTTGCTCGTCGTGGCGTTCGTCGGAGGGAACCTGCTCCTCGGGGCCTCGTTTAGCGCCAGAAGCACGGTGAAG
TCCTCAGCCTCAGGTACGCACGCAATGAAAACTGCCTCTGTTTGCTGTTCTCTCTCTTGCCCTCTTGTCACTT-------
----GTAGTTCAGATGAACCCCGTTCTGTTTCTTCTGTCCCGTTTGGTTTAGAGAGAAAAGTGTAGATAGCTTTAGCAGC
TAGTGTCCGGTGTTGGTGCTTGGTTCGATCTTTAAAAAGATCTTGGATGCGAGGTGGTGAAAGAAACTGCCAGTCCGACA
TGATAAAGCAAATCTCATAGTTAT------ATCTTTTTATTTTGGGTCTTCTCCTCTC----TTTTGACGATTGGGTCCT
CTTCTCTGCAACTGCATACAGCTTGAAGGAAATGTTT-GTAGGAAACTAAGCGAGGTTCCCAAAGTTATCTTCGTAGCTC
CAATAGACTGTTAGATTCCGTTACGTTTGCATGGTTTGGTGCTGGTTTCTTCGGTTCTCACTATGTAGGTTCAGCAGCTA
CTTAGTTTCAGTAGGGAATATATGGCCTATGGCTTGACATCTGAACTGCAACCAATGCAGACCCGGACTATGGAACCGCT
CAGCTAAACGGCAGGAGACTAAAGGTGTGCATTCTCTGACAGACAGAACCTGTAAAAGCACACTACATTTCTTCACACAT
CAGTATAATATACAAACACCACATATACCCTCTACTTCACATAATTTTCATAATGAAAATTTGTTTTTGTTTCATTATAG
CTTCTATAAACTCTGAAGGAAGAATACCTAAGTTGTGTTCCTTGTATACCTTTCCCAGGAAAGTGGACACGGTGTTACCA
ACAGGAAGACTAGAAACTTACAAGATGTGAAGGCTGATGACTACCAACCTATTGACCCAAGTCCAAGCTCGAAGGCAAGT
ATTAGGCCAGCTCCAATCGAGCATGGCACTCCTCTTCTTCCTTATGTGCCACGGTACCCGCCGCCTCCTGGTCAACCGAA
GGATGCGCGTTCTGCTCAATCCGCTGCCTCTCCTGTCGCTTAGCTGAAAACTGAAATGCTCCAGAGGCGGTACTTGAAAG
ATTAGAGAACCACCATATGTCCAAAGTTTTCTCTGATGTTCCGTTGTGTGTCGTATGTGTGTTTACGCAAAGTACTTGGA
TGGTGCATGTTCTTTGATGTCTCAGTGTTTGGAACCACTTGGTGAGGGACAGTGTTAGTTGTATTTGTGGGTGGTCAATT
AGTCAACTGCTCAAATCTTGAGGGCATACTTCTAGAGTAGATAAGGTACCAGCACTATTCTGGGGCACCTAGGTAAGCTG
CAGTACTGTTGTCATATGTAAATGTGATTGTTATGTTATA--GCATAACTAT-GTATTAGTCAGAACTGTTTACTGAATT
CTTGTGCGACCTTGGTGCTTGGTTGAAGCAGTTACCCAATTTTCAGAGAACTATCAGTATTGGAATATCTATTTCCAGCG
TGAATCATTGGACAGGTGT-ATTCACCAATCTAAGCCTCTTAGTAGGTCCGGTTTGGAACGCGAGAATTTTTCTGGGTTC
CAGATTGAACTATTTCCTATGAAATTCTG-TTGTCCCAAACATTCCCCCAAAAGTTTATTCTTCCACTTCTTCCACCAGC
TATCTGTAAAGATGATGGATTTGACAACCTACTGAAGGTGGTATTGTCAAACCAGATTCCATAATTAATAGAAGTTGACA
CTTAAGCTCTAAGTGTTTCTCGTATGGGTATTCTCACATTTGAGAATCTTGCAATAAAGGTTTTCTAAGTATGGTACCCT
CTAGTTTTGGTCGGTATGATGAGAAGGATGGCTAGTTAGTCCATGTCATTTCCAAAGACACTTTTCTGAATACAATAGTC
AAAAATATACAAACATGTCCTGATTACATTTTGCACAATCACCTACCGTTACCATACCCCTTGTATGTATTCTGTGACAT
CCTATTGAGCACATGTTGATTCTTTTATTCTTAATTTGCCTTAGAAACTAAGGATCATGTGTTAATCAGCAAACAAAGCG
TGCTACCTATCT---
>SNPs
---------------S-------S--------------------------------------------------------
----------------------------------------------------S---------------------------
-----------S----------------S---S-----------------------------------------------
---------------------------------------------------S----------------------------
----------------------S-----------------------------------SSS--SSSSSSSSS--------
------------------------------------------------S-------SS----------------------
-------------------------------------------------------------------------S------
---S---------------------------------------------------S----S------S------------
---------------------------------------------------------S----------------------
----------------S---------------------------------------------------------------
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--------------S-----S--------------SSS------------------------------------------
----------------------S---------------------------------------------------------
------------------S-------------------S---------------------S---S-----S---------
----------------------------------------S--S-S-S--------------------------------
---------------------------------S----------------------------------------------
----------------------------------------------------------------------S---------
-----------------S--------------------------------------------------------------
------S-------------------------------------------------------------------------
------------------------S------------S---------------------------SS-------------
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---------------S--------S---------------------------------S-------S-------------
----------------------------------------------------------------S-S--S---------S
--------------------------------S-------------------S-----------------S---------
----------------------------------------------------------------------S---------
------------------------S-------------------------------------------------------
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------------S----------------------------S--------------------------------------
-------------------------------------------S-------------------------S----------
---S----------------------------------------------------------S-----------------
------------------------------S-------------------------------------------------
---------S--------SS--------SS-------------S---S-------------------------S------
------------------------------------S----------------S----S------S--SS-------S--
-----S---------------S-----------------------------S----------------------------
------S----------------------------------------------S--------------------------
------------------S---------------S---------------------------------------------
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------------SSS
>forward_133
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---------------------------------AGAAGGCTCGAACGACATCG---------------------------
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>reverse_1248
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-----------------------------------------------CTGTGTTGGTGCTTGGTTCG-------------
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>forward_1159
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-------------------ACGCAATGAAAACTGCCTCC-----------------------------------------
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>reverse_2484
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---ATGTGACCTTGGTGCTTGGT---------------------------------------------------------
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